Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02665 and A4249_RS02670 overlap by 4 nucleotides A4249_RS02670 and A4249_RS02675 are separated by 60 nucleotides A4249_RS02675 and A4249_RS02680 are separated by 38 nucleotides A4249_RS02680 and A4249_RS02685 overlap by 4 nucleotides
A4249_RS02665: A4249_RS02665 - MBL fold metallo-hydrolase, at 569,872 to 570,957
_RS02665
A4249_RS02670: A4249_RS02670 - enoyl-CoA hydratase, at 570,954 to 571,727
_RS02670
A4249_RS02675: A4249_RS02675 - N-acetyltransferase, at 571,788 to 572,282
_RS02675
A4249_RS02680: A4249_RS02680 - DUF1285 domain-containing protein, at 572,321 to 572,866
_RS02680
A4249_RS02685: A4249_RS02685 - CoA pyrophosphatase, at 572,863 to 573,525
_RS02685
Position (kb) 571
572
573 Strain fitness (log2 ratio) -2
-1
0
1 at 570.832 kb on - strand, within A4249_RS02665 at 570.865 kb on + strand at 570.865 kb on + strand at 570.865 kb on + strand at 570.965 kb on + strand at 570.965 kb on + strand at 570.965 kb on + strand at 570.965 kb on + strand at 570.965 kb on + strand at 570.966 kb on - strand at 570.966 kb on - strand at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.047 kb on + strand, within A4249_RS02670 at 571.048 kb on - strand, within A4249_RS02670 at 571.048 kb on - strand, within A4249_RS02670 at 571.048 kb on - strand, within A4249_RS02670 at 571.048 kb on - strand, within A4249_RS02670 at 571.048 kb on - strand, within A4249_RS02670 at 571.048 kb on - strand, within A4249_RS02670 at 571.048 kb on - strand, within A4249_RS02670 at 571.048 kb on - strand, within A4249_RS02670 at 571.479 kb on - strand, within A4249_RS02670 at 571.725 kb on + strand at 571.773 kb on + strand at 571.773 kb on + strand at 571.773 kb on + strand at 571.773 kb on + strand at 571.774 kb on - strand at 571.774 kb on - strand at 571.774 kb on - strand at 571.774 kb on - strand at 571.774 kb on - strand at 571.807 kb on + strand at 571.807 kb on + strand at 571.807 kb on + strand at 571.807 kb on + strand at 571.807 kb on + strand at 571.808 kb on - strand at 571.819 kb on + strand at 571.957 kb on + strand, within A4249_RS02675 at 571.958 kb on - strand, within A4249_RS02675 at 572.157 kb on + strand, within A4249_RS02675 at 572.158 kb on - strand, within A4249_RS02675 at 572.309 kb on + strand at 572.309 kb on + strand at 572.310 kb on - strand at 572.310 kb on - strand at 572.310 kb on - strand at 572.326 kb on + strand at 572.326 kb on + strand at 572.435 kb on - strand, within A4249_RS02680 at 572.435 kb on - strand, within A4249_RS02680 at 572.499 kb on + strand, within A4249_RS02680 at 572.499 kb on + strand, within A4249_RS02680 at 572.777 kb on + strand, within A4249_RS02680 at 572.777 kb on + strand, within A4249_RS02680 at 572.777 kb on + strand, within A4249_RS02680 at 572.777 kb on + strand, within A4249_RS02680 at 572.777 kb on + strand, within A4249_RS02680 at 572.777 kb on + strand, within A4249_RS02680 at 572.777 kb on + strand, within A4249_RS02680 at 572.777 kb on + strand, within A4249_RS02680 at 572.778 kb on - strand, within A4249_RS02680 at 572.778 kb on - strand, within A4249_RS02680 at 572.778 kb on - strand, within A4249_RS02680 at 572.778 kb on - strand, within A4249_RS02680 at 572.778 kb on - strand, within A4249_RS02680 at 572.778 kb on - strand, within A4249_RS02680 at 573.149 kb on + strand, within A4249_RS02685 at 573.149 kb on + strand, within A4249_RS02685 at 573.150 kb on - strand, within A4249_RS02685 at 573.217 kb on + strand, within A4249_RS02685 at 573.217 kb on + strand, within A4249_RS02685 at 573.217 kb on + strand, within A4249_RS02685 at 573.217 kb on + strand, within A4249_RS02685 at 573.218 kb on - strand, within A4249_RS02685 at 573.218 kb on - strand, within A4249_RS02685 at 573.218 kb on - strand, within A4249_RS02685
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 570,832 - A4249_RS02665 0.88 +0.4 570,865 + +0.4 570,865 + -1.2 570,865 + -0.3 570,965 + +0.2 570,965 + -0.5 570,965 + +1.4 570,965 + +0.2 570,965 + -0.3 570,966 - +0.2 570,966 - +0.6 571,047 + A4249_RS02670 0.12 -0.1 571,047 + A4249_RS02670 0.12 +0.1 571,047 + A4249_RS02670 0.12 +0.6 571,047 + A4249_RS02670 0.12 -0.8 571,047 + A4249_RS02670 0.12 +0.4 571,047 + A4249_RS02670 0.12 -0.2 571,047 + A4249_RS02670 0.12 +0.5 571,047 + A4249_RS02670 0.12 -0.3 571,047 + A4249_RS02670 0.12 -0.4 571,047 + A4249_RS02670 0.12 -0.0 571,047 + A4249_RS02670 0.12 -0.2 571,047 + A4249_RS02670 0.12 -1.2 571,047 + A4249_RS02670 0.12 +0.4 571,047 + A4249_RS02670 0.12 -0.1 571,048 - A4249_RS02670 0.12 -0.0 571,048 - A4249_RS02670 0.12 +1.1 571,048 - A4249_RS02670 0.12 +0.3 571,048 - A4249_RS02670 0.12 -0.1 571,048 - A4249_RS02670 0.12 -0.4 571,048 - A4249_RS02670 0.12 -0.1 571,048 - A4249_RS02670 0.12 +1.0 571,048 - A4249_RS02670 0.12 -0.1 571,479 - A4249_RS02670 0.68 -0.8 571,725 + -0.0 571,773 + +0.3 571,773 + +0.0 571,773 + +0.8 571,773 + -0.8 571,774 - -0.6 571,774 - -0.9 571,774 - +0.5 571,774 - +0.4 571,774 - +0.4 571,807 + -0.3 571,807 + -0.1 571,807 + +0.1 571,807 + -0.0 571,807 + +0.3 571,808 - -0.6 571,819 + -0.1 571,957 + A4249_RS02675 0.34 -0.9 571,958 - A4249_RS02675 0.34 -0.4 572,157 + A4249_RS02675 0.75 -0.9 572,158 - A4249_RS02675 0.75 +0.4 572,309 + -0.7 572,309 + -0.2 572,310 - -0.4 572,310 - -0.6 572,310 - -1.0 572,326 + -0.1 572,326 + -0.1 572,435 - A4249_RS02680 0.21 +1.4 572,435 - A4249_RS02680 0.21 -0.9 572,499 + A4249_RS02680 0.33 -0.7 572,499 + A4249_RS02680 0.33 -0.4 572,777 + A4249_RS02680 0.84 -1.5 572,777 + A4249_RS02680 0.84 -0.7 572,777 + A4249_RS02680 0.84 -0.2 572,777 + A4249_RS02680 0.84 -2.4 572,777 + A4249_RS02680 0.84 -0.5 572,777 + A4249_RS02680 0.84 +0.2 572,777 + A4249_RS02680 0.84 +0.3 572,777 + A4249_RS02680 0.84 +0.2 572,778 - A4249_RS02680 0.84 +1.1 572,778 - A4249_RS02680 0.84 -1.3 572,778 - A4249_RS02680 0.84 -0.2 572,778 - A4249_RS02680 0.84 -0.1 572,778 - A4249_RS02680 0.84 -0.1 572,778 - A4249_RS02680 0.84 -0.1 573,149 + A4249_RS02685 0.43 +0.7 573,149 + A4249_RS02685 0.43 -0.6 573,150 - A4249_RS02685 0.43 -0.2 573,217 + A4249_RS02685 0.53 +0.1 573,217 + A4249_RS02685 0.53 -0.5 573,217 + A4249_RS02685 0.53 -1.0 573,217 + A4249_RS02685 0.53 +0.2 573,218 - A4249_RS02685 0.54 +1.1 573,218 - A4249_RS02685 0.54 +0.8 573,218 - A4249_RS02685 0.54 +0.3
Or see this region's nucleotide sequence