Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02395 and A4249_RS02400 are separated by 109 nucleotides A4249_RS02400 and A4249_RS02405 are separated by 134 nucleotides A4249_RS02405 and A4249_RS02410 are separated by 2 nucleotides
A4249_RS02395: A4249_RS02395 - FecR domain-containing protein, at 512,320 to 513,270
_RS02395
A4249_RS02400: A4249_RS02400 - RNA polymerase sigma factor, at 513,380 to 513,970
_RS02400
A4249_RS02405: A4249_RS02405 - hypothetical protein, at 514,105 to 515,070
_RS02405
A4249_RS02410: A4249_RS02410 - glycosyltransferase family 4 protein, at 515,073 to 516,224
_RS02410
Position (kb) 514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 513.138 kb on - strand, within A4249_RS02395 at 513.138 kb on - strand, within A4249_RS02395 at 513.313 kb on + strand at 513.313 kb on + strand at 513.313 kb on + strand at 513.314 kb on - strand at 513.348 kb on + strand at 513.349 kb on - strand at 513.477 kb on + strand, within A4249_RS02400 at 513.477 kb on + strand, within A4249_RS02400 at 513.477 kb on + strand, within A4249_RS02400 at 513.478 kb on - strand, within A4249_RS02400 at 513.478 kb on - strand, within A4249_RS02400 at 513.478 kb on - strand, within A4249_RS02400 at 513.722 kb on + strand, within A4249_RS02400 at 513.722 kb on + strand, within A4249_RS02400 at 513.722 kb on + strand, within A4249_RS02400 at 513.723 kb on - strand, within A4249_RS02400 at 513.723 kb on - strand, within A4249_RS02400 at 513.723 kb on - strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.780 kb on + strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.781 kb on - strand, within A4249_RS02400 at 513.871 kb on - strand, within A4249_RS02400 at 513.871 kb on - strand, within A4249_RS02400 at 513.871 kb on - strand, within A4249_RS02400 at 514.057 kb on + strand at 514.057 kb on + strand at 514.057 kb on + strand at 514.057 kb on + strand at 514.057 kb on + strand at 514.057 kb on + strand at 514.058 kb on - strand at 514.058 kb on - strand at 514.058 kb on - strand at 514.058 kb on - strand at 514.058 kb on - strand at 514.059 kb on + strand at 514.059 kb on + strand at 514.059 kb on + strand at 514.059 kb on + strand at 514.059 kb on + strand at 514.059 kb on + strand at 514.060 kb on - strand at 514.060 kb on - strand at 514.060 kb on - strand at 514.060 kb on - strand at 514.060 kb on - strand at 514.060 kb on - strand at 514.099 kb on + strand at 514.100 kb on + strand at 514.100 kb on + strand at 514.100 kb on + strand at 514.100 kb on + strand at 514.101 kb on - strand at 514.101 kb on - strand at 514.101 kb on - strand at 514.101 kb on - strand at 514.101 kb on - strand at 514.101 kb on - strand at 514.145 kb on + strand at 514.145 kb on + strand at 514.145 kb on + strand at 514.146 kb on - strand at 514.216 kb on + strand, within A4249_RS02405 at 514.216 kb on + strand, within A4249_RS02405 at 514.216 kb on + strand, within A4249_RS02405 at 514.216 kb on + strand, within A4249_RS02405 at 514.216 kb on + strand, within A4249_RS02405 at 514.217 kb on - strand, within A4249_RS02405 at 514.217 kb on - strand, within A4249_RS02405 at 514.217 kb on - strand, within A4249_RS02405 at 514.217 kb on - strand, within A4249_RS02405 at 514.217 kb on - strand, within A4249_RS02405 at 514.217 kb on - strand, within A4249_RS02405 at 514.217 kb on - strand, within A4249_RS02405 at 514.217 kb on - strand, within A4249_RS02405 at 514.217 kb on - strand, within A4249_RS02405 at 514.217 kb on - strand, within A4249_RS02405 at 514.282 kb on + strand, within A4249_RS02405 at 514.283 kb on - strand, within A4249_RS02405 at 514.283 kb on - strand, within A4249_RS02405 at 514.309 kb on + strand, within A4249_RS02405 at 514.309 kb on + strand, within A4249_RS02405 at 514.310 kb on - strand, within A4249_RS02405 at 514.381 kb on + strand, within A4249_RS02405 at 514.414 kb on + strand, within A4249_RS02405 at 514.414 kb on + strand, within A4249_RS02405 at 514.414 kb on + strand, within A4249_RS02405 at 514.414 kb on + strand, within A4249_RS02405 at 514.414 kb on + strand, within A4249_RS02405 at 514.414 kb on + strand, within A4249_RS02405 at 514.415 kb on - strand, within A4249_RS02405 at 514.415 kb on - strand, within A4249_RS02405 at 514.415 kb on - strand, within A4249_RS02405 at 514.415 kb on - strand, within A4249_RS02405 at 514.415 kb on - strand, within A4249_RS02405 at 514.415 kb on - strand, within A4249_RS02405 at 514.415 kb on - strand, within A4249_RS02405 at 514.415 kb on - strand, within A4249_RS02405 at 514.432 kb on + strand, within A4249_RS02405 at 514.432 kb on + strand, within A4249_RS02405 at 514.432 kb on + strand, within A4249_RS02405 at 514.432 kb on + strand, within A4249_RS02405 at 514.433 kb on - strand, within A4249_RS02405 at 514.433 kb on - strand, within A4249_RS02405 at 514.433 kb on - strand, within A4249_RS02405 at 514.756 kb on + strand, within A4249_RS02405 at 514.756 kb on + strand, within A4249_RS02405 at 514.756 kb on + strand, within A4249_RS02405 at 514.756 kb on + strand, within A4249_RS02405 at 514.756 kb on + strand, within A4249_RS02405 at 514.756 kb on + strand, within A4249_RS02405 at 514.757 kb on - strand, within A4249_RS02405 at 514.757 kb on - strand, within A4249_RS02405 at 514.757 kb on - strand, within A4249_RS02405 at 515.078 kb on + strand at 515.079 kb on - strand at 515.322 kb on + strand, within A4249_RS02410 at 515.322 kb on + strand, within A4249_RS02410 at 515.323 kb on - strand, within A4249_RS02410 at 515.439 kb on + strand, within A4249_RS02410 at 515.439 kb on + strand, within A4249_RS02410 at 515.439 kb on + strand, within A4249_RS02410 at 515.439 kb on + strand, within A4249_RS02410 at 515.439 kb on + strand, within A4249_RS02410 at 515.439 kb on + strand, within A4249_RS02410 at 515.440 kb on - strand, within A4249_RS02410 at 515.440 kb on - strand, within A4249_RS02410 at 515.440 kb on - strand, within A4249_RS02410 at 515.440 kb on - strand, within A4249_RS02410 at 515.440 kb on - strand, within A4249_RS02410 at 515.440 kb on - strand, within A4249_RS02410 at 515.875 kb on + strand, within A4249_RS02410 at 515.876 kb on - strand, within A4249_RS02410 at 515.876 kb on - strand, within A4249_RS02410 at 515.961 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.970 kb on + strand, within A4249_RS02410 at 515.971 kb on - strand, within A4249_RS02410 at 515.971 kb on - strand, within A4249_RS02410 at 515.971 kb on - strand, within A4249_RS02410 at 515.971 kb on - strand, within A4249_RS02410 at 515.971 kb on - strand, within A4249_RS02410 at 515.971 kb on - strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.069 kb on + strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410 at 516.070 kb on - strand, within A4249_RS02410
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 513,138 - A4249_RS02395 0.86 +0.1 513,138 - A4249_RS02395 0.86 -1.0 513,313 + -0.2 513,313 + -1.1 513,313 + +0.4 513,314 - -0.5 513,348 + +0.7 513,349 - -1.3 513,477 + A4249_RS02400 0.16 +0.3 513,477 + A4249_RS02400 0.16 -0.2 513,477 + A4249_RS02400 0.16 -0.1 513,478 - A4249_RS02400 0.17 +0.0 513,478 - A4249_RS02400 0.17 -0.2 513,478 - A4249_RS02400 0.17 +0.1 513,722 + A4249_RS02400 0.58 +0.0 513,722 + A4249_RS02400 0.58 +0.0 513,722 + A4249_RS02400 0.58 +0.6 513,723 - A4249_RS02400 0.58 -0.9 513,723 - A4249_RS02400 0.58 -0.4 513,723 - A4249_RS02400 0.58 -0.0 513,780 + A4249_RS02400 0.68 +0.7 513,780 + A4249_RS02400 0.68 -0.5 513,780 + A4249_RS02400 0.68 +0.9 513,780 + A4249_RS02400 0.68 +0.3 513,780 + A4249_RS02400 0.68 -0.5 513,780 + A4249_RS02400 0.68 +1.1 513,780 + A4249_RS02400 0.68 -0.1 513,780 + A4249_RS02400 0.68 +0.4 513,780 + A4249_RS02400 0.68 -0.2 513,780 + A4249_RS02400 0.68 +0.6 513,780 + A4249_RS02400 0.68 -0.3 513,780 + A4249_RS02400 0.68 -0.4 513,780 + A4249_RS02400 0.68 -1.1 513,780 + A4249_RS02400 0.68 -0.6 513,780 + A4249_RS02400 0.68 -0.1 513,780 + A4249_RS02400 0.68 +1.4 513,780 + A4249_RS02400 0.68 -1.0 513,780 + A4249_RS02400 0.68 +0.9 513,781 - A4249_RS02400 0.68 -1.4 513,781 - A4249_RS02400 0.68 +1.1 513,781 - A4249_RS02400 0.68 -0.7 513,781 - A4249_RS02400 0.68 +1.0 513,781 - A4249_RS02400 0.68 +0.3 513,781 - A4249_RS02400 0.68 -3.0 513,781 - A4249_RS02400 0.68 +0.1 513,781 - A4249_RS02400 0.68 +0.5 513,781 - A4249_RS02400 0.68 -0.7 513,781 - A4249_RS02400 0.68 -0.3 513,781 - A4249_RS02400 0.68 +2.0 513,781 - A4249_RS02400 0.68 +0.6 513,781 - A4249_RS02400 0.68 +0.9 513,781 - A4249_RS02400 0.68 -1.6 513,871 - A4249_RS02400 0.83 +0.3 513,871 - A4249_RS02400 0.83 +1.1 513,871 - A4249_RS02400 0.83 +0.1 514,057 + -0.6 514,057 + -0.9 514,057 + +0.6 514,057 + -0.3 514,057 + +0.9 514,057 + -0.9 514,058 - +0.2 514,058 - +0.1 514,058 - -0.6 514,058 - -0.3 514,058 - -0.7 514,059 + -0.3 514,059 + +0.3 514,059 + -0.2 514,059 + -0.3 514,059 + +0.0 514,059 + -0.6 514,060 - +0.0 514,060 - -0.4 514,060 - +0.2 514,060 - +0.7 514,060 - +0.0 514,060 - -0.9 514,099 + +0.2 514,100 + -1.9 514,100 + +1.4 514,100 + +1.1 514,100 + +1.0 514,101 - +0.5 514,101 - +0.7 514,101 - -0.1 514,101 - -0.5 514,101 - -0.3 514,101 - +0.1 514,145 + +0.2 514,145 + +0.1 514,145 + -0.7 514,146 - +1.1 514,216 + A4249_RS02405 0.11 -0.0 514,216 + A4249_RS02405 0.11 -1.1 514,216 + A4249_RS02405 0.11 -0.3 514,216 + A4249_RS02405 0.11 -0.4 514,216 + A4249_RS02405 0.11 -0.3 514,217 - A4249_RS02405 0.12 +0.0 514,217 - A4249_RS02405 0.12 -0.7 514,217 - A4249_RS02405 0.12 +0.1 514,217 - A4249_RS02405 0.12 +0.1 514,217 - A4249_RS02405 0.12 -0.5 514,217 - A4249_RS02405 0.12 +0.1 514,217 - A4249_RS02405 0.12 +0.1 514,217 - A4249_RS02405 0.12 -0.3 514,217 - A4249_RS02405 0.12 -0.5 514,217 - A4249_RS02405 0.12 -0.9 514,282 + A4249_RS02405 0.18 -0.3 514,283 - A4249_RS02405 0.18 -0.8 514,283 - A4249_RS02405 0.18 -0.2 514,309 + A4249_RS02405 0.21 +0.0 514,309 + A4249_RS02405 0.21 -0.2 514,310 - A4249_RS02405 0.21 -1.1 514,381 + A4249_RS02405 0.29 +0.8 514,414 + A4249_RS02405 0.32 +0.4 514,414 + A4249_RS02405 0.32 -0.5 514,414 + A4249_RS02405 0.32 -0.1 514,414 + A4249_RS02405 0.32 -0.2 514,414 + A4249_RS02405 0.32 +0.4 514,414 + A4249_RS02405 0.32 -0.5 514,415 - A4249_RS02405 0.32 -0.7 514,415 - A4249_RS02405 0.32 -0.9 514,415 - A4249_RS02405 0.32 -0.5 514,415 - A4249_RS02405 0.32 -0.1 514,415 - A4249_RS02405 0.32 -0.9 514,415 - A4249_RS02405 0.32 -0.7 514,415 - A4249_RS02405 0.32 -0.7 514,415 - A4249_RS02405 0.32 -0.6 514,432 + A4249_RS02405 0.34 -0.6 514,432 + A4249_RS02405 0.34 +0.2 514,432 + A4249_RS02405 0.34 -0.2 514,432 + A4249_RS02405 0.34 -0.0 514,433 - A4249_RS02405 0.34 +0.1 514,433 - A4249_RS02405 0.34 -0.4 514,433 - A4249_RS02405 0.34 +1.1 514,756 + A4249_RS02405 0.67 -1.4 514,756 + A4249_RS02405 0.67 -0.4 514,756 + A4249_RS02405 0.67 -0.3 514,756 + A4249_RS02405 0.67 -0.7 514,756 + A4249_RS02405 0.67 +0.4 514,756 + A4249_RS02405 0.67 -0.3 514,757 - A4249_RS02405 0.67 -0.9 514,757 - A4249_RS02405 0.67 -0.1 514,757 - A4249_RS02405 0.67 -1.0 515,078 + -2.0 515,079 - -0.3 515,322 + A4249_RS02410 0.22 -0.6 515,322 + A4249_RS02410 0.22 +0.3 515,323 - A4249_RS02410 0.22 -0.5 515,439 + A4249_RS02410 0.32 -1.2 515,439 + A4249_RS02410 0.32 +0.1 515,439 + A4249_RS02410 0.32 -0.5 515,439 + A4249_RS02410 0.32 -0.6 515,439 + A4249_RS02410 0.32 -0.7 515,439 + A4249_RS02410 0.32 -1.0 515,440 - A4249_RS02410 0.32 -1.7 515,440 - A4249_RS02410 0.32 -0.3 515,440 - A4249_RS02410 0.32 +0.1 515,440 - A4249_RS02410 0.32 -0.2 515,440 - A4249_RS02410 0.32 -0.4 515,440 - A4249_RS02410 0.32 +0.4 515,875 + A4249_RS02410 0.70 +0.4 515,876 - A4249_RS02410 0.70 -1.4 515,876 - A4249_RS02410 0.70 -0.1 515,961 + A4249_RS02410 0.77 +0.3 515,970 + A4249_RS02410 0.78 -0.3 515,970 + A4249_RS02410 0.78 +1.4 515,970 + A4249_RS02410 0.78 -0.9 515,970 + A4249_RS02410 0.78 -0.2 515,970 + A4249_RS02410 0.78 -0.1 515,970 + A4249_RS02410 0.78 -0.7 515,970 + A4249_RS02410 0.78 -0.1 515,970 + A4249_RS02410 0.78 +0.2 515,970 + A4249_RS02410 0.78 -1.6 515,970 + A4249_RS02410 0.78 -0.5 515,970 + A4249_RS02410 0.78 -0.6 515,971 - A4249_RS02410 0.78 -0.5 515,971 - A4249_RS02410 0.78 +0.2 515,971 - A4249_RS02410 0.78 -0.6 515,971 - A4249_RS02410 0.78 -0.1 515,971 - A4249_RS02410 0.78 -0.9 515,971 - A4249_RS02410 0.78 -1.8 516,069 + A4249_RS02410 0.86 -0.0 516,069 + A4249_RS02410 0.86 -0.0 516,069 + A4249_RS02410 0.86 -1.0 516,069 + A4249_RS02410 0.86 -0.2 516,069 + A4249_RS02410 0.86 +0.2 516,069 + A4249_RS02410 0.86 +0.1 516,069 + A4249_RS02410 0.86 -0.2 516,069 + A4249_RS02410 0.86 -0.6 516,069 + A4249_RS02410 0.86 +0.4 516,069 + A4249_RS02410 0.86 -0.4 516,069 + A4249_RS02410 0.86 -2.0 516,069 + A4249_RS02410 0.86 -1.6 516,069 + A4249_RS02410 0.86 -0.6 516,069 + A4249_RS02410 0.86 +0.1 516,069 + A4249_RS02410 0.86 -0.4 516,069 + A4249_RS02410 0.86 -0.2 516,069 + A4249_RS02410 0.86 -1.2 516,070 - A4249_RS02410 0.87 -0.3 516,070 - A4249_RS02410 0.87 +0.0 516,070 - A4249_RS02410 0.87 -0.1 516,070 - A4249_RS02410 0.87 -0.4 516,070 - A4249_RS02410 0.87 +0.8 516,070 - A4249_RS02410 0.87 +0.3 516,070 - A4249_RS02410 0.87 -0.6 516,070 - A4249_RS02410 0.87 -0.2 516,070 - A4249_RS02410 0.87 -0.3 516,070 - A4249_RS02410 0.87 +0.5 516,070 - A4249_RS02410 0.87 -0.4 516,070 - A4249_RS02410 0.87 +0.4 516,070 - A4249_RS02410 0.87 -0.6 516,070 - A4249_RS02410 0.87 -0.0 516,070 - A4249_RS02410 0.87 -1.9 516,070 - A4249_RS02410 0.87 -0.2 516,070 - A4249_RS02410 0.87 -0.7 516,070 - A4249_RS02410 0.87 +0.1 516,070 - A4249_RS02410 0.87 +0.0 516,070 - A4249_RS02410 0.87 -1.5
Or see this region's nucleotide sequence