Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02100 and A4249_RS02105 are separated by 381 nucleotides A4249_RS02105 and A4249_RS02110 are separated by 216 nucleotides
A4249_RS02100: A4249_RS02100 - DUF2332 family protein, at 439,321 to 440,385
_RS02100
A4249_RS02105: A4249_RS02105 - methyl-accepting chemotaxis protein, at 440,767 to 442,647
_RS02105
A4249_RS02110: A4249_RS02110 - TonB-dependent receptor, at 442,864 to 445,353
_RS02110
Position (kb) 440
441
442
443 Strain fitness (log2 ratio) -2
-1
0
1
2 at 439.902 kb on + strand, within A4249_RS02100 at 439.903 kb on - strand, within A4249_RS02100 at 439.903 kb on - strand, within A4249_RS02100 at 439.903 kb on - strand, within A4249_RS02100 at 439.903 kb on - strand, within A4249_RS02100 at 439.903 kb on - strand, within A4249_RS02100 at 439.903 kb on - strand, within A4249_RS02100 at 439.903 kb on - strand, within A4249_RS02100 at 439.904 kb on + strand, within A4249_RS02100 at 439.904 kb on + strand, within A4249_RS02100 at 439.904 kb on + strand, within A4249_RS02100 at 439.904 kb on + strand, within A4249_RS02100 at 439.905 kb on - strand, within A4249_RS02100 at 439.905 kb on - strand, within A4249_RS02100 at 439.905 kb on - strand, within A4249_RS02100 at 439.905 kb on - strand, within A4249_RS02100 at 439.905 kb on - strand, within A4249_RS02100 at 439.905 kb on - strand, within A4249_RS02100 at 439.905 kb on - strand, within A4249_RS02100 at 439.910 kb on + strand, within A4249_RS02100 at 439.911 kb on - strand, within A4249_RS02100 at 439.911 kb on - strand, within A4249_RS02100 at 439.911 kb on - strand, within A4249_RS02100 at 440.069 kb on + strand, within A4249_RS02100 at 440.069 kb on + strand, within A4249_RS02100 at 440.069 kb on + strand, within A4249_RS02100 at 440.069 kb on + strand, within A4249_RS02100 at 440.069 kb on + strand, within A4249_RS02100 at 440.069 kb on + strand, within A4249_RS02100 at 440.069 kb on + strand, within A4249_RS02100 at 440.069 kb on + strand, within A4249_RS02100 at 440.069 kb on + strand, within A4249_RS02100 at 440.070 kb on - strand, within A4249_RS02100 at 440.070 kb on - strand, within A4249_RS02100 at 440.070 kb on - strand, within A4249_RS02100 at 440.070 kb on - strand, within A4249_RS02100 at 440.070 kb on - strand, within A4249_RS02100 at 440.070 kb on - strand, within A4249_RS02100 at 440.132 kb on + strand, within A4249_RS02100 at 440.132 kb on + strand, within A4249_RS02100 at 440.133 kb on - strand, within A4249_RS02100 at 440.133 kb on - strand, within A4249_RS02100 at 440.133 kb on - strand, within A4249_RS02100 at 440.150 kb on + strand, within A4249_RS02100 at 440.150 kb on + strand, within A4249_RS02100 at 440.150 kb on + strand, within A4249_RS02100 at 440.151 kb on - strand, within A4249_RS02100 at 440.151 kb on - strand, within A4249_RS02100 at 440.151 kb on - strand, within A4249_RS02100 at 440.151 kb on - strand, within A4249_RS02100 at 440.151 kb on - strand, within A4249_RS02100 at 440.151 kb on - strand, within A4249_RS02100 at 440.151 kb on - strand, within A4249_RS02100 at 440.151 kb on - strand, within A4249_RS02100 at 440.197 kb on + strand, within A4249_RS02100 at 440.197 kb on + strand, within A4249_RS02100 at 440.198 kb on - strand, within A4249_RS02100 at 440.237 kb on + strand, within A4249_RS02100 at 440.237 kb on + strand, within A4249_RS02100 at 440.237 kb on + strand, within A4249_RS02100 at 440.237 kb on + strand, within A4249_RS02100 at 440.238 kb on - strand, within A4249_RS02100 at 440.238 kb on - strand, within A4249_RS02100 at 440.238 kb on - strand, within A4249_RS02100 at 440.238 kb on - strand, within A4249_RS02100 at 440.238 kb on - strand, within A4249_RS02100 at 440.238 kb on - strand, within A4249_RS02100 at 440.238 kb on - strand, within A4249_RS02100 at 440.238 kb on - strand, within A4249_RS02100 at 440.238 kb on - strand, within A4249_RS02100 at 440.238 kb on - strand, within A4249_RS02100 at 440.420 kb on - strand at 440.432 kb on + strand at 440.433 kb on - strand at 440.433 kb on - strand at 440.515 kb on + strand at 440.515 kb on + strand at 440.516 kb on - strand at 440.516 kb on - strand at 440.519 kb on + strand at 440.520 kb on - strand at 440.520 kb on - strand at 440.520 kb on - strand at 440.534 kb on + strand at 440.535 kb on - strand at 440.535 kb on - strand at 440.575 kb on + strand at 440.575 kb on + strand at 440.575 kb on + strand at 440.576 kb on - strand at 440.576 kb on - strand at 440.576 kb on - strand at 440.576 kb on - strand at 440.576 kb on - strand at 440.576 kb on - strand at 440.598 kb on + strand at 440.599 kb on - strand at 440.599 kb on - strand at 440.599 kb on - strand at 440.599 kb on - strand at 440.603 kb on - strand at 440.611 kb on - strand at 440.611 kb on - strand at 440.624 kb on + strand at 440.624 kb on + strand at 440.624 kb on + strand at 440.707 kb on + strand at 440.708 kb on - strand at 440.711 kb on + strand at 440.721 kb on + strand at 440.726 kb on - strand at 440.730 kb on - strand at 440.731 kb on + strand at 440.732 kb on - strand at 440.986 kb on + strand, within A4249_RS02105 at 440.986 kb on + strand, within A4249_RS02105 at 440.986 kb on + strand, within A4249_RS02105 at 440.986 kb on + strand, within A4249_RS02105 at 440.987 kb on - strand, within A4249_RS02105 at 440.987 kb on - strand, within A4249_RS02105 at 440.987 kb on - strand, within A4249_RS02105 at 440.987 kb on - strand, within A4249_RS02105 at 440.987 kb on - strand, within A4249_RS02105 at 440.987 kb on - strand, within A4249_RS02105 at 440.987 kb on - strand, within A4249_RS02105 at 440.987 kb on - strand, within A4249_RS02105 at 440.998 kb on + strand, within A4249_RS02105 at 440.998 kb on + strand, within A4249_RS02105 at 440.999 kb on - strand, within A4249_RS02105 at 441.001 kb on + strand, within A4249_RS02105 at 441.001 kb on + strand, within A4249_RS02105 at 441.001 kb on + strand, within A4249_RS02105 at 441.002 kb on - strand, within A4249_RS02105 at 441.002 kb on - strand, within A4249_RS02105 at 441.002 kb on - strand, within A4249_RS02105 at 441.002 kb on - strand, within A4249_RS02105 at 441.002 kb on - strand, within A4249_RS02105 at 441.134 kb on + strand, within A4249_RS02105 at 441.134 kb on + strand, within A4249_RS02105 at 441.703 kb on + strand, within A4249_RS02105 at 441.703 kb on + strand, within A4249_RS02105 at 441.704 kb on - strand, within A4249_RS02105 at 441.704 kb on - strand, within A4249_RS02105 at 441.704 kb on - strand, within A4249_RS02105 at 441.704 kb on - strand, within A4249_RS02105 at 441.704 kb on - strand, within A4249_RS02105 at 442.076 kb on + strand, within A4249_RS02105 at 442.077 kb on - strand, within A4249_RS02105 at 442.077 kb on - strand, within A4249_RS02105 at 442.077 kb on - strand, within A4249_RS02105 at 442.077 kb on - strand, within A4249_RS02105 at 442.512 kb on + strand at 442.512 kb on + strand at 442.513 kb on - strand at 442.513 kb on - strand at 442.645 kb on + strand at 442.645 kb on + strand at 442.646 kb on - strand at 442.668 kb on + strand at 442.728 kb on + strand at 442.877 kb on - strand at 442.903 kb on - strand at 443.089 kb on + strand at 443.089 kb on + strand at 443.090 kb on - strand at 443.090 kb on - strand at 443.164 kb on + strand, within A4249_RS02110 at 443.164 kb on + strand, within A4249_RS02110 at 443.164 kb on + strand, within A4249_RS02110 at 443.164 kb on + strand, within A4249_RS02110 at 443.164 kb on + strand, within A4249_RS02110 at 443.164 kb on + strand, within A4249_RS02110 at 443.164 kb on + strand, within A4249_RS02110 at 443.164 kb on + strand, within A4249_RS02110 at 443.164 kb on + strand, within A4249_RS02110 at 443.164 kb on + strand, within A4249_RS02110 at 443.164 kb on + strand, within A4249_RS02110 at 443.165 kb on - strand, within A4249_RS02110 at 443.165 kb on - strand, within A4249_RS02110 at 443.165 kb on - strand, within A4249_RS02110 at 443.165 kb on - strand, within A4249_RS02110 at 443.165 kb on - strand, within A4249_RS02110 at 443.165 kb on - strand, within A4249_RS02110 at 443.165 kb on - strand, within A4249_RS02110 at 443.165 kb on - strand, within A4249_RS02110 at 443.165 kb on - strand, within A4249_RS02110 at 443.165 kb on - strand, within A4249_RS02110 at 443.166 kb on + strand, within A4249_RS02110 at 443.166 kb on + strand, within A4249_RS02110 at 443.166 kb on + strand, within A4249_RS02110 at 443.167 kb on - strand, within A4249_RS02110 at 443.167 kb on - strand, within A4249_RS02110 at 443.167 kb on - strand, within A4249_RS02110 at 443.167 kb on - strand, within A4249_RS02110 at 443.167 kb on - strand, within A4249_RS02110 at 443.206 kb on + strand, within A4249_RS02110 at 443.206 kb on + strand, within A4249_RS02110 at 443.207 kb on - strand, within A4249_RS02110 at 443.207 kb on - strand, within A4249_RS02110 at 443.207 kb on - strand, within A4249_RS02110 at 443.207 kb on - strand, within A4249_RS02110 at 443.207 kb on - strand, within A4249_RS02110 at 443.275 kb on + strand, within A4249_RS02110 at 443.276 kb on - strand, within A4249_RS02110 at 443.276 kb on - strand, within A4249_RS02110 at 443.287 kb on + strand, within A4249_RS02110 at 443.287 kb on + strand, within A4249_RS02110 at 443.288 kb on - strand, within A4249_RS02110 at 443.434 kb on + strand, within A4249_RS02110 at 443.435 kb on - strand, within A4249_RS02110 at 443.435 kb on - strand, within A4249_RS02110 at 443.443 kb on + strand, within A4249_RS02110 at 443.443 kb on + strand, within A4249_RS02110 at 443.444 kb on - strand, within A4249_RS02110 at 443.461 kb on + strand, within A4249_RS02110 at 443.461 kb on + strand, within A4249_RS02110 at 443.462 kb on - strand, within A4249_RS02110 at 443.462 kb on - strand, within A4249_RS02110 at 443.462 kb on - strand, within A4249_RS02110 at 443.509 kb on + strand, within A4249_RS02110 at 443.509 kb on + strand, within A4249_RS02110 at 443.614 kb on + strand, within A4249_RS02110 at 443.614 kb on + strand, within A4249_RS02110 at 443.615 kb on - strand, within A4249_RS02110 at 443.647 kb on + strand, within A4249_RS02110
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 439,902 + A4249_RS02100 0.55 +0.9 439,903 - A4249_RS02100 0.55 +0.0 439,903 - A4249_RS02100 0.55 -0.4 439,903 - A4249_RS02100 0.55 -0.4 439,903 - A4249_RS02100 0.55 -0.9 439,903 - A4249_RS02100 0.55 +0.6 439,903 - A4249_RS02100 0.55 -0.4 439,903 - A4249_RS02100 0.55 -1.0 439,904 + A4249_RS02100 0.55 -0.4 439,904 + A4249_RS02100 0.55 -0.8 439,904 + A4249_RS02100 0.55 +0.1 439,904 + A4249_RS02100 0.55 -0.3 439,905 - A4249_RS02100 0.55 -0.3 439,905 - A4249_RS02100 0.55 -1.9 439,905 - A4249_RS02100 0.55 +0.7 439,905 - A4249_RS02100 0.55 +0.3 439,905 - A4249_RS02100 0.55 -0.2 439,905 - A4249_RS02100 0.55 +0.1 439,905 - A4249_RS02100 0.55 +1.4 439,910 + A4249_RS02100 0.55 +0.5 439,911 - A4249_RS02100 0.55 +0.4 439,911 - A4249_RS02100 0.55 -0.0 439,911 - A4249_RS02100 0.55 +0.9 440,069 + A4249_RS02100 0.70 +1.4 440,069 + A4249_RS02100 0.70 +0.0 440,069 + A4249_RS02100 0.70 -0.6 440,069 + A4249_RS02100 0.70 -1.1 440,069 + A4249_RS02100 0.70 -0.2 440,069 + A4249_RS02100 0.70 +0.5 440,069 + A4249_RS02100 0.70 -0.3 440,069 + A4249_RS02100 0.70 +0.0 440,069 + A4249_RS02100 0.70 -0.6 440,070 - A4249_RS02100 0.70 +0.3 440,070 - A4249_RS02100 0.70 -0.8 440,070 - A4249_RS02100 0.70 -0.5 440,070 - A4249_RS02100 0.70 +0.8 440,070 - A4249_RS02100 0.70 -1.1 440,070 - A4249_RS02100 0.70 +0.6 440,132 + A4249_RS02100 0.76 -0.5 440,132 + A4249_RS02100 0.76 -0.3 440,133 - A4249_RS02100 0.76 -0.4 440,133 - A4249_RS02100 0.76 +0.7 440,133 - A4249_RS02100 0.76 +0.3 440,150 + A4249_RS02100 0.78 -0.6 440,150 + A4249_RS02100 0.78 +1.2 440,150 + A4249_RS02100 0.78 -1.6 440,151 - A4249_RS02100 0.78 -0.2 440,151 - A4249_RS02100 0.78 +0.2 440,151 - A4249_RS02100 0.78 -0.7 440,151 - A4249_RS02100 0.78 +0.1 440,151 - A4249_RS02100 0.78 -1.5 440,151 - A4249_RS02100 0.78 -0.5 440,151 - A4249_RS02100 0.78 -1.1 440,151 - A4249_RS02100 0.78 -1.2 440,197 + A4249_RS02100 0.82 +0.1 440,197 + A4249_RS02100 0.82 +0.6 440,198 - A4249_RS02100 0.82 +1.0 440,237 + A4249_RS02100 0.86 -0.7 440,237 + A4249_RS02100 0.86 +1.7 440,237 + A4249_RS02100 0.86 -0.6 440,237 + A4249_RS02100 0.86 -0.9 440,238 - A4249_RS02100 0.86 +0.7 440,238 - A4249_RS02100 0.86 -1.1 440,238 - A4249_RS02100 0.86 -0.8 440,238 - A4249_RS02100 0.86 -2.0 440,238 - A4249_RS02100 0.86 +0.6 440,238 - A4249_RS02100 0.86 -1.2 440,238 - A4249_RS02100 0.86 -0.1 440,238 - A4249_RS02100 0.86 -0.1 440,238 - A4249_RS02100 0.86 -0.7 440,238 - A4249_RS02100 0.86 +0.5 440,420 - +0.7 440,432 + +0.0 440,433 - +0.2 440,433 - +1.1 440,515 + -0.6 440,515 + +0.4 440,516 - +0.0 440,516 - +2.0 440,519 + -0.1 440,520 - -0.1 440,520 - -2.1 440,520 - -0.6 440,534 + +0.1 440,535 - -0.3 440,535 - -0.4 440,575 + +1.0 440,575 + +0.5 440,575 + -0.0 440,576 - +0.7 440,576 - +0.9 440,576 - -0.4 440,576 - -0.1 440,576 - +0.6 440,576 - -1.0 440,598 + -0.4 440,599 - -0.0 440,599 - -0.0 440,599 - +0.5 440,599 - -0.1 440,603 - +0.5 440,611 - -0.1 440,611 - +1.5 440,624 + +0.1 440,624 + +0.2 440,624 + -0.1 440,707 + -0.3 440,708 - +0.4 440,711 + +1.0 440,721 + -0.1 440,726 - -0.4 440,730 - -0.6 440,731 + -0.1 440,732 - +0.8 440,986 + A4249_RS02105 0.12 -1.9 440,986 + A4249_RS02105 0.12 -0.3 440,986 + A4249_RS02105 0.12 +1.1 440,986 + A4249_RS02105 0.12 -1.1 440,987 - A4249_RS02105 0.12 -0.3 440,987 - A4249_RS02105 0.12 -0.6 440,987 - A4249_RS02105 0.12 -0.3 440,987 - A4249_RS02105 0.12 +0.4 440,987 - A4249_RS02105 0.12 -0.6 440,987 - A4249_RS02105 0.12 -1.0 440,987 - A4249_RS02105 0.12 -1.9 440,987 - A4249_RS02105 0.12 -0.2 440,998 + A4249_RS02105 0.12 -0.3 440,998 + A4249_RS02105 0.12 -1.0 440,999 - A4249_RS02105 0.12 -0.5 441,001 + A4249_RS02105 0.12 +0.0 441,001 + A4249_RS02105 0.12 -0.6 441,001 + A4249_RS02105 0.12 +0.1 441,002 - A4249_RS02105 0.12 +0.0 441,002 - A4249_RS02105 0.12 +0.6 441,002 - A4249_RS02105 0.12 -0.1 441,002 - A4249_RS02105 0.12 +1.0 441,002 - A4249_RS02105 0.12 -0.9 441,134 + A4249_RS02105 0.20 -0.2 441,134 + A4249_RS02105 0.20 +0.3 441,703 + A4249_RS02105 0.50 -0.1 441,703 + A4249_RS02105 0.50 -0.4 441,704 - A4249_RS02105 0.50 +1.0 441,704 - A4249_RS02105 0.50 -0.8 441,704 - A4249_RS02105 0.50 -2.6 441,704 - A4249_RS02105 0.50 -1.3 441,704 - A4249_RS02105 0.50 -0.8 442,076 + A4249_RS02105 0.70 -0.6 442,077 - A4249_RS02105 0.70 -0.2 442,077 - A4249_RS02105 0.70 -1.1 442,077 - A4249_RS02105 0.70 -0.4 442,077 - A4249_RS02105 0.70 +0.8 442,512 + +0.1 442,512 + +0.9 442,513 - +0.1 442,513 - -0.5 442,645 + -0.0 442,645 + -0.5 442,646 - +1.1 442,668 + -0.3 442,728 + +0.9 442,877 - -0.5 442,903 - -0.7 443,089 + -0.4 443,089 + -0.1 443,090 - -0.9 443,090 - -0.5 443,164 + A4249_RS02110 0.12 -0.3 443,164 + A4249_RS02110 0.12 -0.7 443,164 + A4249_RS02110 0.12 +0.1 443,164 + A4249_RS02110 0.12 +0.6 443,164 + A4249_RS02110 0.12 -0.3 443,164 + A4249_RS02110 0.12 +0.2 443,164 + A4249_RS02110 0.12 -1.9 443,164 + A4249_RS02110 0.12 +0.5 443,164 + A4249_RS02110 0.12 +0.7 443,164 + A4249_RS02110 0.12 -0.2 443,164 + A4249_RS02110 0.12 +0.5 443,165 - A4249_RS02110 0.12 -0.1 443,165 - A4249_RS02110 0.12 -1.3 443,165 - A4249_RS02110 0.12 -0.9 443,165 - A4249_RS02110 0.12 +0.4 443,165 - A4249_RS02110 0.12 +0.9 443,165 - A4249_RS02110 0.12 -0.6 443,165 - A4249_RS02110 0.12 -1.4 443,165 - A4249_RS02110 0.12 -0.4 443,165 - A4249_RS02110 0.12 -1.4 443,165 - A4249_RS02110 0.12 -0.4 443,166 + A4249_RS02110 0.12 -0.6 443,166 + A4249_RS02110 0.12 -0.8 443,166 + A4249_RS02110 0.12 -0.7 443,167 - A4249_RS02110 0.12 -0.1 443,167 - A4249_RS02110 0.12 -0.7 443,167 - A4249_RS02110 0.12 +0.0 443,167 - A4249_RS02110 0.12 -0.2 443,167 - A4249_RS02110 0.12 -0.9 443,206 + A4249_RS02110 0.14 +1.0 443,206 + A4249_RS02110 0.14 +0.3 443,207 - A4249_RS02110 0.14 -1.0 443,207 - A4249_RS02110 0.14 +0.3 443,207 - A4249_RS02110 0.14 -0.6 443,207 - A4249_RS02110 0.14 +0.8 443,207 - A4249_RS02110 0.14 +0.7 443,275 + A4249_RS02110 0.17 -0.8 443,276 - A4249_RS02110 0.17 +0.6 443,276 - A4249_RS02110 0.17 +1.1 443,287 + A4249_RS02110 0.17 -0.9 443,287 + A4249_RS02110 0.17 -0.2 443,288 - A4249_RS02110 0.17 -1.7 443,434 + A4249_RS02110 0.23 +0.9 443,435 - A4249_RS02110 0.23 -0.1 443,435 - A4249_RS02110 0.23 +0.3 443,443 + A4249_RS02110 0.23 +1.7 443,443 + A4249_RS02110 0.23 -0.2 443,444 - A4249_RS02110 0.23 -1.0 443,461 + A4249_RS02110 0.24 -0.3 443,461 + A4249_RS02110 0.24 -0.3 443,462 - A4249_RS02110 0.24 +1.7 443,462 - A4249_RS02110 0.24 +0.5 443,462 - A4249_RS02110 0.24 -0.0 443,509 + A4249_RS02110 0.26 -0.0 443,509 + A4249_RS02110 0.26 +0.0 443,614 + A4249_RS02110 0.30 -1.1 443,614 + A4249_RS02110 0.30 +0.6 443,615 - A4249_RS02110 0.30 +1.1 443,647 + A4249_RS02110 0.31 +0.1
Or see this region's nucleotide sequence