Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02055 and A4249_RS02060 overlap by 4 nucleotides A4249_RS02060 and A4249_RS02065 are separated by 53 nucleotides A4249_RS02065 and A4249_RS02070 are separated by 79 nucleotides
A4249_RS02055: A4249_RS02055 - fumarylacetoacetate hydrolase family protein, at 425,904 to 427,052
_RS02055
A4249_RS02060: A4249_RS02060 - SDR family oxidoreductase, at 427,049 to 427,807
_RS02060
A4249_RS02065: A4249_RS02065 - sugar porter family MFS transporter, at 427,861 to 429,294
_RS02065
A4249_RS02070: A4249_RS02070 - aldehyde dehydrogenase family protein, at 429,374 to 430,816
_RS02070
Position (kb) 427
428
429
430 Strain fitness (log2 ratio) -2
-1
0
1 at 427.064 kb on + strand at 427.064 kb on + strand at 427.064 kb on + strand at 427.064 kb on + strand at 427.064 kb on + strand at 427.064 kb on + strand at 427.064 kb on + strand at 427.064 kb on + strand at 427.065 kb on - strand at 427.065 kb on - strand at 427.065 kb on - strand at 427.065 kb on - strand at 427.065 kb on - strand at 427.065 kb on - strand at 427.065 kb on - strand at 427.065 kb on - strand at 427.066 kb on + strand at 427.379 kb on + strand, within A4249_RS02060 at 427.379 kb on + strand, within A4249_RS02060 at 427.379 kb on + strand, within A4249_RS02060 at 427.418 kb on + strand, within A4249_RS02060 at 427.418 kb on + strand, within A4249_RS02060 at 427.418 kb on + strand, within A4249_RS02060 at 427.418 kb on + strand, within A4249_RS02060 at 427.418 kb on + strand, within A4249_RS02060 at 427.419 kb on - strand, within A4249_RS02060 at 427.526 kb on + strand, within A4249_RS02060 at 427.527 kb on - strand, within A4249_RS02060 at 427.652 kb on + strand, within A4249_RS02060 at 427.652 kb on + strand, within A4249_RS02060 at 427.652 kb on + strand, within A4249_RS02060 at 427.652 kb on + strand, within A4249_RS02060 at 427.653 kb on - strand, within A4249_RS02060 at 427.653 kb on - strand, within A4249_RS02060 at 427.653 kb on - strand, within A4249_RS02060 at 427.653 kb on - strand, within A4249_RS02060 at 427.781 kb on + strand at 427.781 kb on + strand at 427.781 kb on + strand at 427.782 kb on - strand at 427.782 kb on - strand at 427.805 kb on + strand at 427.806 kb on - strand at 427.976 kb on - strand at 428.162 kb on + strand, within A4249_RS02065 at 428.162 kb on + strand, within A4249_RS02065 at 428.162 kb on + strand, within A4249_RS02065 at 428.162 kb on + strand, within A4249_RS02065 at 428.162 kb on + strand, within A4249_RS02065 at 428.162 kb on + strand, within A4249_RS02065 at 428.162 kb on + strand, within A4249_RS02065 at 428.162 kb on + strand, within A4249_RS02065 at 428.163 kb on - strand, within A4249_RS02065 at 428.163 kb on - strand, within A4249_RS02065 at 428.225 kb on + strand, within A4249_RS02065 at 428.226 kb on - strand, within A4249_RS02065 at 428.269 kb on + strand, within A4249_RS02065 at 428.269 kb on + strand, within A4249_RS02065 at 428.269 kb on + strand, within A4249_RS02065 at 428.269 kb on + strand, within A4249_RS02065 at 428.269 kb on + strand, within A4249_RS02065 at 428.269 kb on + strand, within A4249_RS02065 at 428.269 kb on + strand, within A4249_RS02065 at 428.269 kb on + strand, within A4249_RS02065 at 428.269 kb on + strand, within A4249_RS02065 at 428.270 kb on - strand, within A4249_RS02065 at 428.270 kb on - strand, within A4249_RS02065 at 428.270 kb on - strand, within A4249_RS02065 at 428.270 kb on - strand, within A4249_RS02065 at 428.270 kb on - strand, within A4249_RS02065 at 428.270 kb on - strand, within A4249_RS02065 at 428.270 kb on - strand, within A4249_RS02065 at 428.271 kb on + strand, within A4249_RS02065 at 428.271 kb on + strand, within A4249_RS02065 at 428.271 kb on + strand, within A4249_RS02065 at 428.271 kb on + strand, within A4249_RS02065 at 428.271 kb on + strand, within A4249_RS02065 at 428.271 kb on + strand, within A4249_RS02065 at 428.271 kb on + strand, within A4249_RS02065 at 428.272 kb on - strand, within A4249_RS02065 at 428.272 kb on - strand, within A4249_RS02065 at 428.272 kb on - strand, within A4249_RS02065 at 428.368 kb on + strand, within A4249_RS02065 at 428.368 kb on + strand, within A4249_RS02065 at 428.368 kb on + strand, within A4249_RS02065 at 428.368 kb on + strand, within A4249_RS02065 at 428.368 kb on + strand, within A4249_RS02065 at 428.368 kb on + strand, within A4249_RS02065 at 428.369 kb on - strand, within A4249_RS02065 at 428.369 kb on - strand, within A4249_RS02065 at 428.369 kb on - strand, within A4249_RS02065 at 428.369 kb on - strand, within A4249_RS02065 at 428.369 kb on - strand, within A4249_RS02065 at 428.369 kb on - strand, within A4249_RS02065 at 428.369 kb on - strand, within A4249_RS02065 at 428.369 kb on - strand, within A4249_RS02065 at 428.369 kb on - strand, within A4249_RS02065 at 428.470 kb on + strand, within A4249_RS02065 at 428.470 kb on + strand, within A4249_RS02065 at 428.470 kb on + strand, within A4249_RS02065 at 428.470 kb on + strand, within A4249_RS02065 at 428.470 kb on + strand, within A4249_RS02065 at 428.471 kb on - strand, within A4249_RS02065 at 428.471 kb on - strand, within A4249_RS02065 at 428.471 kb on - strand, within A4249_RS02065 at 428.471 kb on - strand, within A4249_RS02065 at 428.725 kb on - strand, within A4249_RS02065 at 428.725 kb on - strand, within A4249_RS02065 at 428.740 kb on + strand, within A4249_RS02065 at 428.740 kb on + strand, within A4249_RS02065 at 428.740 kb on + strand, within A4249_RS02065 at 428.740 kb on + strand, within A4249_RS02065 at 428.740 kb on + strand, within A4249_RS02065 at 428.740 kb on + strand, within A4249_RS02065 at 428.740 kb on + strand, within A4249_RS02065 at 428.740 kb on + strand, within A4249_RS02065 at 428.740 kb on + strand, within A4249_RS02065 at 428.740 kb on + strand, within A4249_RS02065 at 428.741 kb on - strand, within A4249_RS02065 at 428.741 kb on - strand, within A4249_RS02065 at 428.741 kb on - strand, within A4249_RS02065 at 428.741 kb on - strand, within A4249_RS02065 at 428.741 kb on - strand, within A4249_RS02065 at 428.744 kb on - strand, within A4249_RS02065 at 428.744 kb on - strand, within A4249_RS02065 at 428.744 kb on - strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.016 kb on + strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.017 kb on - strand, within A4249_RS02065 at 429.196 kb on + strand at 429.196 kb on + strand at 429.197 kb on - strand at 429.197 kb on - strand at 429.205 kb on + strand at 429.205 kb on + strand at 429.205 kb on + strand at 429.205 kb on + strand at 429.205 kb on + strand at 429.206 kb on - strand at 429.206 kb on - strand at 429.206 kb on - strand at 429.221 kb on + strand at 429.357 kb on + strand at 429.357 kb on + strand at 429.357 kb on + strand at 429.358 kb on - strand at 429.358 kb on - strand at 429.710 kb on + strand, within A4249_RS02070 at 429.710 kb on + strand, within A4249_RS02070 at 429.710 kb on + strand, within A4249_RS02070 at 429.785 kb on + strand, within A4249_RS02070 at 429.785 kb on + strand, within A4249_RS02070 at 429.785 kb on + strand, within A4249_RS02070 at 429.786 kb on - strand, within A4249_RS02070 at 429.786 kb on - strand, within A4249_RS02070 at 429.786 kb on - strand, within A4249_RS02070 at 429.786 kb on - strand, within A4249_RS02070 at 429.786 kb on - strand, within A4249_RS02070 at 429.979 kb on + strand, within A4249_RS02070 at 429.979 kb on + strand, within A4249_RS02070 at 429.979 kb on + strand, within A4249_RS02070 at 429.979 kb on + strand, within A4249_RS02070 at 429.979 kb on + strand, within A4249_RS02070 at 429.980 kb on - strand, within A4249_RS02070 at 429.980 kb on - strand, within A4249_RS02070 at 429.980 kb on - strand, within A4249_RS02070 at 429.980 kb on - strand, within A4249_RS02070 at 429.980 kb on - strand, within A4249_RS02070 at 429.980 kb on - strand, within A4249_RS02070 at 429.980 kb on - strand, within A4249_RS02070 at 429.980 kb on - strand, within A4249_RS02070
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 427,064 + -0.5 427,064 + +0.3 427,064 + -0.2 427,064 + +0.3 427,064 + -1.3 427,064 + -0.7 427,064 + -1.4 427,064 + +0.8 427,065 - -0.6 427,065 - +0.3 427,065 - -0.9 427,065 - +0.4 427,065 - +0.7 427,065 - -0.2 427,065 - +1.6 427,065 - -0.9 427,066 + +1.0 427,379 + A4249_RS02060 0.43 +0.9 427,379 + A4249_RS02060 0.43 -0.3 427,379 + A4249_RS02060 0.43 -1.3 427,418 + A4249_RS02060 0.49 +0.6 427,418 + A4249_RS02060 0.49 -1.4 427,418 + A4249_RS02060 0.49 -0.6 427,418 + A4249_RS02060 0.49 -1.4 427,418 + A4249_RS02060 0.49 -0.0 427,419 - A4249_RS02060 0.49 +0.2 427,526 + A4249_RS02060 0.63 -1.1 427,527 - A4249_RS02060 0.63 -1.2 427,652 + A4249_RS02060 0.79 +0.1 427,652 + A4249_RS02060 0.79 -0.6 427,652 + A4249_RS02060 0.79 +0.8 427,652 + A4249_RS02060 0.79 -0.3 427,653 - A4249_RS02060 0.80 -0.3 427,653 - A4249_RS02060 0.80 +1.1 427,653 - A4249_RS02060 0.80 +0.8 427,653 - A4249_RS02060 0.80 -0.3 427,781 + -0.1 427,781 + +1.0 427,781 + -1.4 427,782 - -1.3 427,782 - +0.0 427,805 + +0.4 427,806 - +0.4 427,976 - +0.0 428,162 + A4249_RS02065 0.21 +0.2 428,162 + A4249_RS02065 0.21 -0.1 428,162 + A4249_RS02065 0.21 -0.8 428,162 + A4249_RS02065 0.21 +1.1 428,162 + A4249_RS02065 0.21 -1.3 428,162 + A4249_RS02065 0.21 +0.0 428,162 + A4249_RS02065 0.21 +0.3 428,162 + A4249_RS02065 0.21 -0.8 428,163 - A4249_RS02065 0.21 +1.6 428,163 - A4249_RS02065 0.21 -1.0 428,225 + A4249_RS02065 0.25 -0.7 428,226 - A4249_RS02065 0.25 -1.1 428,269 + A4249_RS02065 0.28 +0.1 428,269 + A4249_RS02065 0.28 +0.2 428,269 + A4249_RS02065 0.28 -0.8 428,269 + A4249_RS02065 0.28 +0.3 428,269 + A4249_RS02065 0.28 -0.1 428,269 + A4249_RS02065 0.28 +0.0 428,269 + A4249_RS02065 0.28 +0.1 428,269 + A4249_RS02065 0.28 -0.1 428,269 + A4249_RS02065 0.28 -0.1 428,270 - A4249_RS02065 0.29 +0.2 428,270 - A4249_RS02065 0.29 -0.2 428,270 - A4249_RS02065 0.29 +0.9 428,270 - A4249_RS02065 0.29 +0.7 428,270 - A4249_RS02065 0.29 +0.4 428,270 - A4249_RS02065 0.29 +1.5 428,270 - A4249_RS02065 0.29 -0.3 428,271 + A4249_RS02065 0.29 +0.1 428,271 + A4249_RS02065 0.29 -0.5 428,271 + A4249_RS02065 0.29 -0.7 428,271 + A4249_RS02065 0.29 +0.4 428,271 + A4249_RS02065 0.29 -1.1 428,271 + A4249_RS02065 0.29 -0.1 428,271 + A4249_RS02065 0.29 +0.2 428,272 - A4249_RS02065 0.29 +1.3 428,272 - A4249_RS02065 0.29 -0.5 428,272 - A4249_RS02065 0.29 -0.7 428,368 + A4249_RS02065 0.35 -0.6 428,368 + A4249_RS02065 0.35 +0.6 428,368 + A4249_RS02065 0.35 -0.4 428,368 + A4249_RS02065 0.35 +0.6 428,368 + A4249_RS02065 0.35 -0.1 428,368 + A4249_RS02065 0.35 -1.0 428,369 - A4249_RS02065 0.35 +0.0 428,369 - A4249_RS02065 0.35 +0.5 428,369 - A4249_RS02065 0.35 +1.1 428,369 - A4249_RS02065 0.35 -0.4 428,369 - A4249_RS02065 0.35 +0.5 428,369 - A4249_RS02065 0.35 +0.5 428,369 - A4249_RS02065 0.35 -1.0 428,369 - A4249_RS02065 0.35 -1.0 428,369 - A4249_RS02065 0.35 -0.2 428,470 + A4249_RS02065 0.42 -0.1 428,470 + A4249_RS02065 0.42 +1.0 428,470 + A4249_RS02065 0.42 +0.3 428,470 + A4249_RS02065 0.42 +1.1 428,470 + A4249_RS02065 0.42 -2.1 428,471 - A4249_RS02065 0.43 +0.1 428,471 - A4249_RS02065 0.43 +0.1 428,471 - A4249_RS02065 0.43 +0.4 428,471 - A4249_RS02065 0.43 -0.4 428,725 - A4249_RS02065 0.60 +0.4 428,725 - A4249_RS02065 0.60 +0.9 428,740 + A4249_RS02065 0.61 -0.6 428,740 + A4249_RS02065 0.61 +0.4 428,740 + A4249_RS02065 0.61 -0.8 428,740 + A4249_RS02065 0.61 +1.0 428,740 + A4249_RS02065 0.61 +0.7 428,740 + A4249_RS02065 0.61 -0.0 428,740 + A4249_RS02065 0.61 +0.2 428,740 + A4249_RS02065 0.61 -0.9 428,740 + A4249_RS02065 0.61 -0.0 428,740 + A4249_RS02065 0.61 -0.5 428,741 - A4249_RS02065 0.61 +0.0 428,741 - A4249_RS02065 0.61 +0.7 428,741 - A4249_RS02065 0.61 +1.0 428,741 - A4249_RS02065 0.61 -0.1 428,741 - A4249_RS02065 0.61 +0.2 428,744 - A4249_RS02065 0.62 +1.4 428,744 - A4249_RS02065 0.62 +0.5 428,744 - A4249_RS02065 0.62 -0.1 429,016 + A4249_RS02065 0.81 -1.6 429,016 + A4249_RS02065 0.81 +0.0 429,016 + A4249_RS02065 0.81 +0.1 429,016 + A4249_RS02065 0.81 -0.5 429,016 + A4249_RS02065 0.81 -0.6 429,016 + A4249_RS02065 0.81 -0.3 429,016 + A4249_RS02065 0.81 +0.3 429,016 + A4249_RS02065 0.81 -0.1 429,016 + A4249_RS02065 0.81 +0.1 429,016 + A4249_RS02065 0.81 -0.3 429,016 + A4249_RS02065 0.81 +0.5 429,017 - A4249_RS02065 0.81 +0.0 429,017 - A4249_RS02065 0.81 +0.1 429,017 - A4249_RS02065 0.81 -1.4 429,017 - A4249_RS02065 0.81 -1.6 429,017 - A4249_RS02065 0.81 -0.7 429,017 - A4249_RS02065 0.81 -1.4 429,017 - A4249_RS02065 0.81 -0.4 429,017 - A4249_RS02065 0.81 +0.6 429,017 - A4249_RS02065 0.81 -1.4 429,017 - A4249_RS02065 0.81 -0.3 429,017 - A4249_RS02065 0.81 -0.3 429,196 + +0.4 429,196 + +0.2 429,197 - +0.2 429,197 - -0.7 429,205 + -0.1 429,205 + +0.2 429,205 + +0.1 429,205 + -1.6 429,205 + -0.2 429,206 - -0.0 429,206 - -0.5 429,206 - +1.6 429,221 + +0.3 429,357 + -0.1 429,357 + -0.2 429,357 + +1.5 429,358 - -0.4 429,358 - -0.9 429,710 + A4249_RS02070 0.23 -0.1 429,710 + A4249_RS02070 0.23 -0.6 429,710 + A4249_RS02070 0.23 +0.0 429,785 + A4249_RS02070 0.28 -0.6 429,785 + A4249_RS02070 0.28 +1.0 429,785 + A4249_RS02070 0.28 -0.1 429,786 - A4249_RS02070 0.29 -0.3 429,786 - A4249_RS02070 0.29 +0.7 429,786 - A4249_RS02070 0.29 -0.3 429,786 - A4249_RS02070 0.29 -0.0 429,786 - A4249_RS02070 0.29 -0.6 429,979 + A4249_RS02070 0.42 -0.1 429,979 + A4249_RS02070 0.42 -0.2 429,979 + A4249_RS02070 0.42 +0.7 429,979 + A4249_RS02070 0.42 -0.1 429,979 + A4249_RS02070 0.42 -0.4 429,980 - A4249_RS02070 0.42 -0.6 429,980 - A4249_RS02070 0.42 -0.5 429,980 - A4249_RS02070 0.42 -0.6 429,980 - A4249_RS02070 0.42 -0.8 429,980 - A4249_RS02070 0.42 -0.0 429,980 - A4249_RS02070 0.42 +1.2 429,980 - A4249_RS02070 0.42 -0.3 429,980 - A4249_RS02070 0.42 -0.4
Or see this region's nucleotide sequence