Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01675 and A4249_RS01680 overlap by 4 nucleotides A4249_RS01680 and A4249_RS01685 are separated by 42 nucleotides A4249_RS01685 and A4249_RS01690 are separated by 251 nucleotides
A4249_RS01675: A4249_RS01675 - DMT family transporter, at 319,345 to 319,791
_RS01675
A4249_RS01680: A4249_RS01680 - hypothetical protein, at 319,788 to 320,396
_RS01680
A4249_RS01685: A4249_RS01685 - NUDIX domain-containing protein, at 320,439 to 320,909
_RS01685
A4249_RS01690: A4249_RS01690 - TonB-dependent receptor, at 321,161 to 324,232
_RS01690
Position (kb) 320
321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 319.577 kb on + strand, within A4249_RS01675 at 319.578 kb on - strand, within A4249_RS01675 at 319.578 kb on - strand, within A4249_RS01675 at 319.578 kb on - strand, within A4249_RS01675 at 319.578 kb on - strand, within A4249_RS01675 at 319.637 kb on - strand, within A4249_RS01675 at 319.654 kb on - strand, within A4249_RS01675 at 319.802 kb on + strand at 319.899 kb on + strand, within A4249_RS01680 at 319.899 kb on + strand, within A4249_RS01680 at 319.899 kb on + strand, within A4249_RS01680 at 319.899 kb on + strand, within A4249_RS01680 at 319.899 kb on + strand, within A4249_RS01680 at 319.899 kb on + strand, within A4249_RS01680 at 319.899 kb on + strand, within A4249_RS01680 at 319.900 kb on - strand, within A4249_RS01680 at 319.900 kb on - strand, within A4249_RS01680 at 319.900 kb on - strand, within A4249_RS01680 at 319.900 kb on - strand, within A4249_RS01680 at 319.900 kb on - strand, within A4249_RS01680 at 319.900 kb on - strand, within A4249_RS01680 at 319.900 kb on - strand, within A4249_RS01680 at 319.900 kb on - strand, within A4249_RS01680 at 319.900 kb on - strand, within A4249_RS01680 at 320.209 kb on + strand, within A4249_RS01680 at 320.209 kb on + strand, within A4249_RS01680 at 320.209 kb on + strand, within A4249_RS01680 at 320.209 kb on + strand, within A4249_RS01680 at 320.209 kb on + strand, within A4249_RS01680 at 320.209 kb on + strand, within A4249_RS01680 at 320.209 kb on + strand, within A4249_RS01680 at 320.210 kb on - strand, within A4249_RS01680 at 320.210 kb on - strand, within A4249_RS01680 at 320.210 kb on - strand, within A4249_RS01680 at 320.329 kb on + strand, within A4249_RS01680 at 320.329 kb on + strand, within A4249_RS01680 at 320.329 kb on + strand, within A4249_RS01680 at 320.330 kb on - strand, within A4249_RS01680 at 320.330 kb on - strand, within A4249_RS01680 at 320.330 kb on - strand, within A4249_RS01680 at 320.330 kb on - strand, within A4249_RS01680 at 320.330 kb on - strand, within A4249_RS01680 at 320.330 kb on - strand, within A4249_RS01680 at 320.330 kb on - strand, within A4249_RS01680 at 320.330 kb on - strand, within A4249_RS01680 at 320.524 kb on + strand, within A4249_RS01685 at 320.524 kb on + strand, within A4249_RS01685 at 320.524 kb on + strand, within A4249_RS01685 at 320.524 kb on + strand, within A4249_RS01685 at 320.525 kb on - strand, within A4249_RS01685 at 320.525 kb on - strand, within A4249_RS01685 at 320.577 kb on + strand, within A4249_RS01685 at 320.577 kb on + strand, within A4249_RS01685 at 320.577 kb on + strand, within A4249_RS01685 at 320.577 kb on + strand, within A4249_RS01685 at 320.577 kb on + strand, within A4249_RS01685 at 320.577 kb on + strand, within A4249_RS01685 at 320.578 kb on - strand, within A4249_RS01685 at 320.578 kb on - strand, within A4249_RS01685 at 320.578 kb on - strand, within A4249_RS01685 at 320.770 kb on + strand, within A4249_RS01685 at 320.770 kb on + strand, within A4249_RS01685 at 320.770 kb on + strand, within A4249_RS01685 at 320.770 kb on + strand, within A4249_RS01685 at 320.770 kb on + strand, within A4249_RS01685 at 320.770 kb on + strand, within A4249_RS01685 at 320.770 kb on + strand, within A4249_RS01685 at 320.771 kb on - strand, within A4249_RS01685 at 320.771 kb on - strand, within A4249_RS01685 at 320.771 kb on - strand, within A4249_RS01685 at 320.771 kb on - strand, within A4249_RS01685 at 320.771 kb on - strand, within A4249_RS01685 at 320.771 kb on - strand, within A4249_RS01685 at 320.771 kb on - strand, within A4249_RS01685 at 320.771 kb on - strand, within A4249_RS01685 at 320.771 kb on - strand, within A4249_RS01685 at 320.771 kb on - strand, within A4249_RS01685 at 320.925 kb on - strand at 320.956 kb on - strand at 320.956 kb on - strand at 320.956 kb on - strand at 320.956 kb on - strand at 320.997 kb on - strand at 321.023 kb on + strand at 321.023 kb on + strand at 321.036 kb on - strand at 321.072 kb on + strand at 321.072 kb on + strand at 321.072 kb on + strand at 321.073 kb on - strand at 321.073 kb on - strand at 321.075 kb on + strand at 321.075 kb on + strand at 321.075 kb on + strand at 321.075 kb on + strand at 321.076 kb on - strand at 321.076 kb on - strand at 321.076 kb on - strand at 321.076 kb on - strand at 321.076 kb on - strand at 321.103 kb on + strand at 321.104 kb on - strand at 321.104 kb on - strand at 321.218 kb on - strand at 321.218 kb on - strand at 321.249 kb on + strand at 321.250 kb on - strand at 321.250 kb on - strand at 321.391 kb on + strand at 321.479 kb on + strand, within A4249_RS01690 at 321.479 kb on + strand, within A4249_RS01690 at 321.479 kb on + strand, within A4249_RS01690 at 321.480 kb on - strand, within A4249_RS01690 at 321.480 kb on - strand, within A4249_RS01690 at 321.480 kb on - strand, within A4249_RS01690 at 321.506 kb on + strand, within A4249_RS01690 at 321.506 kb on + strand, within A4249_RS01690 at 321.506 kb on + strand, within A4249_RS01690 at 321.506 kb on + strand, within A4249_RS01690 at 321.507 kb on - strand, within A4249_RS01690 at 321.507 kb on - strand, within A4249_RS01690 at 321.507 kb on - strand, within A4249_RS01690 at 321.507 kb on - strand, within A4249_RS01690 at 321.507 kb on - strand, within A4249_RS01690 at 321.507 kb on - strand, within A4249_RS01690 at 321.507 kb on - strand, within A4249_RS01690 at 321.567 kb on - strand, within A4249_RS01690 at 321.574 kb on + strand, within A4249_RS01690 at 321.575 kb on - strand, within A4249_RS01690 at 321.710 kb on + strand, within A4249_RS01690 at 321.710 kb on + strand, within A4249_RS01690 at 321.711 kb on - strand, within A4249_RS01690 at 321.711 kb on - strand, within A4249_RS01690 at 321.719 kb on + strand, within A4249_RS01690 at 321.719 kb on + strand, within A4249_RS01690 at 321.720 kb on - strand, within A4249_RS01690 at 321.720 kb on - strand, within A4249_RS01690 at 321.720 kb on - strand, within A4249_RS01690 at 321.720 kb on - strand, within A4249_RS01690 at 321.720 kb on - strand, within A4249_RS01690 at 321.788 kb on + strand, within A4249_RS01690 at 321.788 kb on + strand, within A4249_RS01690 at 321.788 kb on + strand, within A4249_RS01690 at 321.789 kb on - strand, within A4249_RS01690 at 321.789 kb on - strand, within A4249_RS01690 at 321.833 kb on + strand, within A4249_RS01690 at 321.833 kb on + strand, within A4249_RS01690 at 321.833 kb on + strand, within A4249_RS01690 at 321.833 kb on + strand, within A4249_RS01690 at 321.833 kb on + strand, within A4249_RS01690 at 321.833 kb on + strand, within A4249_RS01690 at 321.834 kb on - strand, within A4249_RS01690 at 321.834 kb on - strand, within A4249_RS01690 at 321.834 kb on - strand, within A4249_RS01690 at 321.834 kb on - strand, within A4249_RS01690 at 321.834 kb on - strand, within A4249_RS01690 at 321.834 kb on - strand, within A4249_RS01690 at 321.834 kb on - strand, within A4249_RS01690 at 321.836 kb on + strand, within A4249_RS01690 at 321.836 kb on + strand, within A4249_RS01690 at 321.836 kb on + strand, within A4249_RS01690 at 321.836 kb on + strand, within A4249_RS01690 at 321.837 kb on - strand, within A4249_RS01690 at 321.837 kb on - strand, within A4249_RS01690 at 321.837 kb on - strand, within A4249_RS01690 at 321.904 kb on + strand, within A4249_RS01690 at 321.905 kb on - strand, within A4249_RS01690 at 321.905 kb on - strand, within A4249_RS01690 at 321.905 kb on - strand, within A4249_RS01690 at 321.905 kb on - strand, within A4249_RS01690
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 319,577 + A4249_RS01675 0.52 +0.5 319,578 - A4249_RS01675 0.52 +0.9 319,578 - A4249_RS01675 0.52 +0.7 319,578 - A4249_RS01675 0.52 -1.2 319,578 - A4249_RS01675 0.52 +0.9 319,637 - A4249_RS01675 0.65 +0.4 319,654 - A4249_RS01675 0.69 -0.2 319,802 + +0.3 319,899 + A4249_RS01680 0.18 -0.4 319,899 + A4249_RS01680 0.18 +0.1 319,899 + A4249_RS01680 0.18 -0.0 319,899 + A4249_RS01680 0.18 +0.6 319,899 + A4249_RS01680 0.18 -0.2 319,899 + A4249_RS01680 0.18 -0.1 319,899 + A4249_RS01680 0.18 +0.2 319,900 - A4249_RS01680 0.18 -1.0 319,900 - A4249_RS01680 0.18 +0.8 319,900 - A4249_RS01680 0.18 +0.9 319,900 - A4249_RS01680 0.18 +0.7 319,900 - A4249_RS01680 0.18 +1.3 319,900 - A4249_RS01680 0.18 -0.6 319,900 - A4249_RS01680 0.18 +0.7 319,900 - A4249_RS01680 0.18 +0.4 319,900 - A4249_RS01680 0.18 +0.9 320,209 + A4249_RS01680 0.69 +0.2 320,209 + A4249_RS01680 0.69 +1.0 320,209 + A4249_RS01680 0.69 -0.5 320,209 + A4249_RS01680 0.69 -0.1 320,209 + A4249_RS01680 0.69 -2.2 320,209 + A4249_RS01680 0.69 +1.2 320,209 + A4249_RS01680 0.69 +0.4 320,210 - A4249_RS01680 0.69 +0.7 320,210 - A4249_RS01680 0.69 +0.0 320,210 - A4249_RS01680 0.69 -0.2 320,329 + A4249_RS01680 0.89 -0.2 320,329 + A4249_RS01680 0.89 -0.4 320,329 + A4249_RS01680 0.89 +0.5 320,330 - A4249_RS01680 0.89 +0.6 320,330 - A4249_RS01680 0.89 +0.2 320,330 - A4249_RS01680 0.89 -0.1 320,330 - A4249_RS01680 0.89 -0.7 320,330 - A4249_RS01680 0.89 -0.1 320,330 - A4249_RS01680 0.89 -0.4 320,330 - A4249_RS01680 0.89 -0.6 320,330 - A4249_RS01680 0.89 +0.2 320,524 + A4249_RS01685 0.18 +0.0 320,524 + A4249_RS01685 0.18 +0.9 320,524 + A4249_RS01685 0.18 -0.1 320,524 + A4249_RS01685 0.18 +0.3 320,525 - A4249_RS01685 0.18 +0.7 320,525 - A4249_RS01685 0.18 -0.4 320,577 + A4249_RS01685 0.29 -0.7 320,577 + A4249_RS01685 0.29 +0.8 320,577 + A4249_RS01685 0.29 +1.1 320,577 + A4249_RS01685 0.29 -0.7 320,577 + A4249_RS01685 0.29 -0.2 320,577 + A4249_RS01685 0.29 +0.1 320,578 - A4249_RS01685 0.30 +0.0 320,578 - A4249_RS01685 0.30 +0.3 320,578 - A4249_RS01685 0.30 +0.4 320,770 + A4249_RS01685 0.70 +0.0 320,770 + A4249_RS01685 0.70 -1.1 320,770 + A4249_RS01685 0.70 -0.1 320,770 + A4249_RS01685 0.70 -0.1 320,770 + A4249_RS01685 0.70 -0.0 320,770 + A4249_RS01685 0.70 +0.1 320,770 + A4249_RS01685 0.70 +0.4 320,771 - A4249_RS01685 0.70 -0.0 320,771 - A4249_RS01685 0.70 +0.3 320,771 - A4249_RS01685 0.70 -0.4 320,771 - A4249_RS01685 0.70 +1.0 320,771 - A4249_RS01685 0.70 -0.3 320,771 - A4249_RS01685 0.70 +0.1 320,771 - A4249_RS01685 0.70 -0.3 320,771 - A4249_RS01685 0.70 -1.2 320,771 - A4249_RS01685 0.70 -1.4 320,771 - A4249_RS01685 0.70 -0.0 320,925 - -0.1 320,956 - +0.2 320,956 - -1.3 320,956 - -0.2 320,956 - -1.1 320,997 - -0.5 321,023 + +0.3 321,023 + -2.8 321,036 - -1.7 321,072 + -0.3 321,072 + +1.5 321,072 + -1.9 321,073 - +0.2 321,073 - +0.3 321,075 + +1.9 321,075 + -1.9 321,075 + -0.1 321,075 + -0.3 321,076 - -0.7 321,076 - -0.9 321,076 - +0.1 321,076 - +1.9 321,076 - +0.9 321,103 + +0.9 321,104 - +0.6 321,104 - +0.3 321,218 - +0.9 321,218 - +0.5 321,249 + +0.3 321,250 - +0.8 321,250 - -0.5 321,391 + -0.3 321,479 + A4249_RS01690 0.10 -0.6 321,479 + A4249_RS01690 0.10 -1.1 321,479 + A4249_RS01690 0.10 -0.5 321,480 - A4249_RS01690 0.10 +1.9 321,480 - A4249_RS01690 0.10 -1.1 321,480 - A4249_RS01690 0.10 +0.7 321,506 + A4249_RS01690 0.11 +1.6 321,506 + A4249_RS01690 0.11 +0.1 321,506 + A4249_RS01690 0.11 -0.1 321,506 + A4249_RS01690 0.11 -0.2 321,507 - A4249_RS01690 0.11 -0.0 321,507 - A4249_RS01690 0.11 +0.1 321,507 - A4249_RS01690 0.11 -0.9 321,507 - A4249_RS01690 0.11 -0.4 321,507 - A4249_RS01690 0.11 -0.3 321,507 - A4249_RS01690 0.11 -1.4 321,507 - A4249_RS01690 0.11 +0.4 321,567 - A4249_RS01690 0.13 -0.7 321,574 + A4249_RS01690 0.13 -1.3 321,575 - A4249_RS01690 0.13 +1.1 321,710 + A4249_RS01690 0.18 -1.7 321,710 + A4249_RS01690 0.18 +1.1 321,711 - A4249_RS01690 0.18 -0.9 321,711 - A4249_RS01690 0.18 +0.2 321,719 + A4249_RS01690 0.18 +0.2 321,719 + A4249_RS01690 0.18 -0.9 321,720 - A4249_RS01690 0.18 -0.3 321,720 - A4249_RS01690 0.18 -0.6 321,720 - A4249_RS01690 0.18 -0.3 321,720 - A4249_RS01690 0.18 -0.1 321,720 - A4249_RS01690 0.18 +0.2 321,788 + A4249_RS01690 0.20 -0.7 321,788 + A4249_RS01690 0.20 -0.1 321,788 + A4249_RS01690 0.20 -0.1 321,789 - A4249_RS01690 0.20 +0.6 321,789 - A4249_RS01690 0.20 -0.5 321,833 + A4249_RS01690 0.22 -0.2 321,833 + A4249_RS01690 0.22 -0.3 321,833 + A4249_RS01690 0.22 +2.4 321,833 + A4249_RS01690 0.22 +1.3 321,833 + A4249_RS01690 0.22 -0.7 321,833 + A4249_RS01690 0.22 -0.5 321,834 - A4249_RS01690 0.22 +0.3 321,834 - A4249_RS01690 0.22 +0.6 321,834 - A4249_RS01690 0.22 +0.6 321,834 - A4249_RS01690 0.22 +0.3 321,834 - A4249_RS01690 0.22 +0.0 321,834 - A4249_RS01690 0.22 -0.3 321,834 - A4249_RS01690 0.22 -1.5 321,836 + A4249_RS01690 0.22 -0.3 321,836 + A4249_RS01690 0.22 -0.1 321,836 + A4249_RS01690 0.22 +1.3 321,836 + A4249_RS01690 0.22 +0.7 321,837 - A4249_RS01690 0.22 +0.6 321,837 - A4249_RS01690 0.22 -0.7 321,837 - A4249_RS01690 0.22 -0.9 321,904 + A4249_RS01690 0.24 -0.5 321,905 - A4249_RS01690 0.24 +1.4 321,905 - A4249_RS01690 0.24 +1.0 321,905 - A4249_RS01690 0.24 -1.9 321,905 - A4249_RS01690 0.24 -1.4
Or see this region's nucleotide sequence