Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01560 and A4249_RS01565 are separated by 107 nucleotides A4249_RS01565 and A4249_RS01570 are separated by 20 nucleotides A4249_RS01570 and A4249_RS01575 are separated by 3 nucleotides
A4249_RS01560: A4249_RS01560 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 292,890 to 293,984
_RS01560
A4249_RS01565: A4249_RS01565 - DciA family protein, at 294,092 to 294,646
_RS01565
A4249_RS01570: A4249_RS01570 - A/G-specific adenine glycosylase, at 294,667 to 295,716
_RS01570
A4249_RS01575: A4249_RS01575 - amylo-alpha-1,6-glucosidase, at 295,720 to 297,867
_RS01575
Position (kb) 294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 293.680 kb on + strand, within A4249_RS01560 at 293.680 kb on + strand, within A4249_RS01560 at 293.680 kb on + strand, within A4249_RS01560 at 293.849 kb on + strand, within A4249_RS01560 at 293.849 kb on + strand, within A4249_RS01560 at 293.904 kb on + strand at 293.905 kb on - strand at 293.955 kb on + strand at 293.957 kb on + strand at 293.958 kb on - strand at 293.958 kb on - strand at 293.958 kb on - strand at 293.958 kb on - strand at 293.958 kb on - strand at 293.997 kb on + strand at 293.997 kb on + strand at 293.997 kb on + strand at 293.998 kb on - strand at 294.028 kb on + strand at 294.029 kb on - strand at 294.029 kb on - strand at 294.040 kb on + strand at 294.040 kb on + strand at 294.040 kb on + strand at 294.040 kb on + strand at 294.041 kb on - strand at 294.041 kb on - strand at 294.041 kb on - strand at 294.041 kb on - strand at 294.041 kb on - strand at 294.041 kb on - strand at 294.041 kb on - strand at 294.053 kb on + strand at 294.054 kb on - strand at 294.054 kb on - strand at 294.652 kb on + strand at 294.652 kb on + strand at 294.652 kb on + strand at 294.652 kb on + strand at 294.652 kb on + strand at 294.652 kb on + strand at 294.652 kb on + strand at 294.652 kb on + strand at 294.652 kb on + strand at 294.652 kb on + strand at 294.652 kb on + strand at 294.653 kb on - strand at 294.653 kb on - strand at 294.653 kb on - strand at 294.653 kb on - strand at 294.653 kb on - strand at 294.653 kb on - strand at 294.653 kb on - strand at 294.653 kb on - strand at 294.653 kb on - strand at 294.653 kb on - strand at 294.654 kb on + strand at 294.654 kb on + strand at 294.654 kb on + strand at 294.654 kb on + strand at 294.654 kb on + strand at 294.654 kb on + strand at 294.654 kb on + strand at 294.654 kb on + strand at 294.654 kb on + strand at 294.654 kb on + strand at 294.655 kb on - strand at 294.655 kb on - strand at 294.655 kb on - strand at 294.655 kb on - strand at 294.655 kb on - strand at 294.655 kb on - strand at 294.656 kb on + strand at 294.656 kb on + strand at 294.656 kb on + strand at 294.656 kb on + strand at 294.657 kb on - strand at 294.657 kb on - strand at 294.657 kb on - strand at 294.657 kb on - strand at 294.657 kb on - strand at 294.689 kb on + strand at 294.689 kb on + strand at 294.689 kb on + strand at 294.689 kb on + strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.690 kb on - strand at 294.721 kb on + strand at 294.844 kb on + strand, within A4249_RS01570 at 294.845 kb on - strand, within A4249_RS01570 at 294.845 kb on - strand, within A4249_RS01570 at 294.937 kb on + strand, within A4249_RS01570 at 294.937 kb on + strand, within A4249_RS01570 at 294.937 kb on + strand, within A4249_RS01570 at 294.937 kb on + strand, within A4249_RS01570 at 294.937 kb on + strand, within A4249_RS01570 at 294.937 kb on + strand, within A4249_RS01570 at 294.938 kb on - strand, within A4249_RS01570 at 294.938 kb on - strand, within A4249_RS01570 at 294.940 kb on + strand, within A4249_RS01570 at 294.940 kb on + strand, within A4249_RS01570 at 294.940 kb on + strand, within A4249_RS01570 at 294.940 kb on + strand, within A4249_RS01570 at 294.940 kb on + strand, within A4249_RS01570 at 294.940 kb on + strand, within A4249_RS01570 at 294.940 kb on + strand, within A4249_RS01570 at 294.940 kb on + strand, within A4249_RS01570 at 294.940 kb on + strand, within A4249_RS01570 at 294.941 kb on - strand, within A4249_RS01570 at 294.941 kb on - strand, within A4249_RS01570 at 294.941 kb on - strand, within A4249_RS01570 at 294.941 kb on - strand, within A4249_RS01570 at 295.051 kb on + strand, within A4249_RS01570 at 295.051 kb on + strand, within A4249_RS01570 at 295.051 kb on + strand, within A4249_RS01570 at 295.051 kb on + strand, within A4249_RS01570 at 295.393 kb on + strand, within A4249_RS01570 at 295.393 kb on + strand, within A4249_RS01570 at 295.393 kb on + strand, within A4249_RS01570 at 295.394 kb on - strand, within A4249_RS01570 at 295.394 kb on - strand, within A4249_RS01570 at 295.394 kb on - strand, within A4249_RS01570 at 295.494 kb on - strand, within A4249_RS01570 at 295.494 kb on - strand, within A4249_RS01570 at 295.577 kb on + strand, within A4249_RS01570 at 295.577 kb on + strand, within A4249_RS01570 at 295.577 kb on + strand, within A4249_RS01570 at 295.578 kb on - strand, within A4249_RS01570 at 295.722 kb on - strand at 296.069 kb on + strand, within A4249_RS01575 at 296.069 kb on + strand, within A4249_RS01575 at 296.069 kb on + strand, within A4249_RS01575 at 296.069 kb on + strand, within A4249_RS01575 at 296.069 kb on + strand, within A4249_RS01575 at 296.069 kb on + strand, within A4249_RS01575 at 296.069 kb on + strand, within A4249_RS01575 at 296.069 kb on + strand, within A4249_RS01575 at 296.069 kb on + strand, within A4249_RS01575 at 296.070 kb on - strand, within A4249_RS01575 at 296.070 kb on - strand, within A4249_RS01575 at 296.070 kb on - strand, within A4249_RS01575 at 296.070 kb on - strand, within A4249_RS01575 at 296.070 kb on - strand, within A4249_RS01575 at 296.070 kb on - strand, within A4249_RS01575 at 296.112 kb on - strand, within A4249_RS01575 at 296.112 kb on - strand, within A4249_RS01575 at 296.171 kb on + strand, within A4249_RS01575 at 296.171 kb on + strand, within A4249_RS01575 at 296.171 kb on + strand, within A4249_RS01575 at 296.171 kb on + strand, within A4249_RS01575 at 296.172 kb on - strand, within A4249_RS01575 at 296.172 kb on - strand, within A4249_RS01575 at 296.172 kb on - strand, within A4249_RS01575 at 296.172 kb on - strand, within A4249_RS01575 at 296.366 kb on + strand, within A4249_RS01575 at 296.366 kb on + strand, within A4249_RS01575 at 296.366 kb on + strand, within A4249_RS01575 at 296.366 kb on + strand, within A4249_RS01575 at 296.366 kb on + strand, within A4249_RS01575 at 296.366 kb on + strand, within A4249_RS01575 at 296.366 kb on + strand, within A4249_RS01575 at 296.366 kb on + strand, within A4249_RS01575 at 296.366 kb on + strand, within A4249_RS01575 at 296.366 kb on + strand, within A4249_RS01575 at 296.367 kb on - strand, within A4249_RS01575 at 296.367 kb on - strand, within A4249_RS01575 at 296.367 kb on - strand, within A4249_RS01575 at 296.367 kb on - strand, within A4249_RS01575 at 296.367 kb on - strand, within A4249_RS01575 at 296.367 kb on - strand, within A4249_RS01575 at 296.367 kb on - strand, within A4249_RS01575 at 296.505 kb on - strand, within A4249_RS01575 at 296.505 kb on - strand, within A4249_RS01575 at 296.505 kb on - strand, within A4249_RS01575 at 296.505 kb on - strand, within A4249_RS01575 at 296.530 kb on - strand, within A4249_RS01575 at 296.530 kb on - strand, within A4249_RS01575 at 296.530 kb on - strand, within A4249_RS01575 at 296.658 kb on - strand, within A4249_RS01575 at 296.658 kb on - strand, within A4249_RS01575
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 293,680 + A4249_RS01560 0.72 -0.4 293,680 + A4249_RS01560 0.72 +0.2 293,680 + A4249_RS01560 0.72 -0.2 293,849 + A4249_RS01560 0.88 +1.2 293,849 + A4249_RS01560 0.88 -0.4 293,904 + -0.6 293,905 - -0.4 293,955 + +1.3 293,957 + +0.9 293,958 - +0.6 293,958 - -0.1 293,958 - +0.5 293,958 - -0.5 293,958 - -1.8 293,997 + -2.1 293,997 + +0.0 293,997 + +0.7 293,998 - -1.7 294,028 + -0.3 294,029 - +0.5 294,029 - -1.1 294,040 + -1.2 294,040 + +0.3 294,040 + +0.9 294,040 + -0.6 294,041 - -0.1 294,041 - +1.2 294,041 - -0.8 294,041 - -1.5 294,041 - +0.2 294,041 - -0.4 294,041 - +2.6 294,053 + -0.1 294,054 - +0.6 294,054 - +0.5 294,652 + +1.6 294,652 + -0.3 294,652 + +0.5 294,652 + +1.0 294,652 + +0.0 294,652 + +0.1 294,652 + +0.6 294,652 + +0.6 294,652 + +0.0 294,652 + -0.1 294,652 + +1.1 294,653 - +0.1 294,653 - -1.5 294,653 - +1.3 294,653 - +0.2 294,653 - -0.2 294,653 - +0.7 294,653 - +0.2 294,653 - +1.0 294,653 - +0.2 294,653 - +1.0 294,654 + -0.9 294,654 + +0.5 294,654 + -0.8 294,654 + -0.1 294,654 + +1.0 294,654 + -0.2 294,654 + +0.4 294,654 + +0.2 294,654 + -0.5 294,654 + +0.1 294,655 - -0.8 294,655 - +0.4 294,655 - -0.8 294,655 - -0.7 294,655 - +0.3 294,655 - +0.8 294,656 + -0.0 294,656 + -1.8 294,656 + -0.7 294,656 + +0.2 294,657 - +0.4 294,657 - +0.4 294,657 - +0.6 294,657 - +0.4 294,657 - +0.7 294,689 + +1.4 294,689 + -1.6 294,689 + +0.3 294,689 + -0.5 294,690 - -0.2 294,690 - +0.3 294,690 - -0.6 294,690 - +0.1 294,690 - -1.0 294,690 - -0.7 294,690 - -0.6 294,690 - +0.1 294,690 - -0.7 294,690 - -1.3 294,690 - +0.9 294,690 - +2.1 294,721 + -0.1 294,844 + A4249_RS01570 0.17 -1.2 294,845 - A4249_RS01570 0.17 -0.6 294,845 - A4249_RS01570 0.17 -0.5 294,937 + A4249_RS01570 0.26 -0.4 294,937 + A4249_RS01570 0.26 +0.4 294,937 + A4249_RS01570 0.26 -0.9 294,937 + A4249_RS01570 0.26 -0.5 294,937 + A4249_RS01570 0.26 +0.4 294,937 + A4249_RS01570 0.26 -0.6 294,938 - A4249_RS01570 0.26 +0.0 294,938 - A4249_RS01570 0.26 +1.3 294,940 + A4249_RS01570 0.26 -0.1 294,940 + A4249_RS01570 0.26 -0.6 294,940 + A4249_RS01570 0.26 +0.2 294,940 + A4249_RS01570 0.26 -0.8 294,940 + A4249_RS01570 0.26 +0.1 294,940 + A4249_RS01570 0.26 +0.6 294,940 + A4249_RS01570 0.26 -0.6 294,940 + A4249_RS01570 0.26 -0.1 294,940 + A4249_RS01570 0.26 +0.2 294,941 - A4249_RS01570 0.26 +0.2 294,941 - A4249_RS01570 0.26 +0.8 294,941 - A4249_RS01570 0.26 +0.4 294,941 - A4249_RS01570 0.26 +0.4 295,051 + A4249_RS01570 0.37 -0.1 295,051 + A4249_RS01570 0.37 -1.1 295,051 + A4249_RS01570 0.37 -0.3 295,051 + A4249_RS01570 0.37 -0.0 295,393 + A4249_RS01570 0.69 -0.3 295,393 + A4249_RS01570 0.69 +0.3 295,393 + A4249_RS01570 0.69 +0.2 295,394 - A4249_RS01570 0.69 -1.0 295,394 - A4249_RS01570 0.69 -2.0 295,394 - A4249_RS01570 0.69 +0.1 295,494 - A4249_RS01570 0.79 +0.2 295,494 - A4249_RS01570 0.79 +0.5 295,577 + A4249_RS01570 0.87 +0.3 295,577 + A4249_RS01570 0.87 +0.8 295,577 + A4249_RS01570 0.87 -1.0 295,578 - A4249_RS01570 0.87 -1.1 295,722 - +0.0 296,069 + A4249_RS01575 0.16 -1.5 296,069 + A4249_RS01575 0.16 -0.4 296,069 + A4249_RS01575 0.16 -1.4 296,069 + A4249_RS01575 0.16 -0.8 296,069 + A4249_RS01575 0.16 +0.2 296,069 + A4249_RS01575 0.16 +1.2 296,069 + A4249_RS01575 0.16 +0.4 296,069 + A4249_RS01575 0.16 -1.8 296,069 + A4249_RS01575 0.16 +0.1 296,070 - A4249_RS01575 0.16 +1.3 296,070 - A4249_RS01575 0.16 +0.2 296,070 - A4249_RS01575 0.16 +0.7 296,070 - A4249_RS01575 0.16 -0.8 296,070 - A4249_RS01575 0.16 +0.3 296,070 - A4249_RS01575 0.16 +0.1 296,112 - A4249_RS01575 0.18 -0.8 296,112 - A4249_RS01575 0.18 +1.2 296,171 + A4249_RS01575 0.21 -0.1 296,171 + A4249_RS01575 0.21 -0.9 296,171 + A4249_RS01575 0.21 -0.3 296,171 + A4249_RS01575 0.21 +0.1 296,172 - A4249_RS01575 0.21 -0.6 296,172 - A4249_RS01575 0.21 -1.5 296,172 - A4249_RS01575 0.21 -0.3 296,172 - A4249_RS01575 0.21 -0.3 296,366 + A4249_RS01575 0.30 +0.7 296,366 + A4249_RS01575 0.30 -0.3 296,366 + A4249_RS01575 0.30 +0.3 296,366 + A4249_RS01575 0.30 +0.4 296,366 + A4249_RS01575 0.30 -1.7 296,366 + A4249_RS01575 0.30 -0.4 296,366 + A4249_RS01575 0.30 -0.7 296,366 + A4249_RS01575 0.30 -0.1 296,366 + A4249_RS01575 0.30 +1.3 296,366 + A4249_RS01575 0.30 +0.3 296,367 - A4249_RS01575 0.30 +1.2 296,367 - A4249_RS01575 0.30 +1.1 296,367 - A4249_RS01575 0.30 -0.7 296,367 - A4249_RS01575 0.30 -0.1 296,367 - A4249_RS01575 0.30 -0.1 296,367 - A4249_RS01575 0.30 +0.7 296,367 - A4249_RS01575 0.30 +0.5 296,505 - A4249_RS01575 0.37 -0.5 296,505 - A4249_RS01575 0.37 +0.4 296,505 - A4249_RS01575 0.37 -0.6 296,505 - A4249_RS01575 0.37 +0.5 296,530 - A4249_RS01575 0.38 -1.7 296,530 - A4249_RS01575 0.38 -0.1 296,530 - A4249_RS01575 0.38 -0.4 296,658 - A4249_RS01575 0.44 -1.6 296,658 - A4249_RS01575 0.44 -1.2
Or see this region's nucleotide sequence