Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01390 and A4249_RS01395 are separated by 181 nucleotides A4249_RS01395 and A4249_RS01400 are separated by 13 nucleotides A4249_RS01400 and A4249_RS01405 overlap by 1 nucleotides A4249_RS01405 and A4249_RS01410 overlap by 1 nucleotides
A4249_RS01390: A4249_RS01390 - hypothetical protein, at 259,973 to 260,203
_RS01390
A4249_RS01395: A4249_RS01395 - hypothetical protein, at 260,385 to 260,855
_RS01395
A4249_RS01400: A4249_RS01400 - ParB N-terminal domain-containing protein, at 260,869 to 262,830
_RS01400
A4249_RS01405: A4249_RS01405 - hypothetical protein, at 262,830 to 263,246
_RS01405
A4249_RS01410: A4249_RS01410 - hypothetical protein, at 263,246 to 263,914
_RS01410
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2 at 259.878 kb on + strand at 259.940 kb on + strand at 259.940 kb on + strand at 259.940 kb on + strand at 259.940 kb on + strand at 259.941 kb on - strand at 259.949 kb on + strand at 259.949 kb on + strand at 259.968 kb on + strand at 259.968 kb on + strand at 259.968 kb on + strand at 259.974 kb on + strand at 259.974 kb on + strand at 260.887 kb on - strand at 260.927 kb on + strand at 260.928 kb on - strand at 260.928 kb on - strand at 260.991 kb on + strand at 260.991 kb on + strand at 261.075 kb on - strand, within A4249_RS01400 at 261.366 kb on - strand, within A4249_RS01400 at 261.616 kb on + strand, within A4249_RS01400 at 261.616 kb on + strand, within A4249_RS01400 at 261.839 kb on - strand, within A4249_RS01400 at 262.460 kb on - strand, within A4249_RS01400 at 262.460 kb on - strand, within A4249_RS01400 at 262.918 kb on - strand, within A4249_RS01405 at 262.918 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.015 kb on - strand, within A4249_RS01405 at 263.158 kb on - strand, within A4249_RS01405 at 263.158 kb on - strand, within A4249_RS01405 at 263.347 kb on - strand, within A4249_RS01410 at 263.347 kb on - strand, within A4249_RS01410 at 263.347 kb on - strand, within A4249_RS01410 at 263.347 kb on - strand, within A4249_RS01410 at 263.347 kb on - strand, within A4249_RS01410 at 263.347 kb on - strand, within A4249_RS01410 at 263.375 kb on + strand, within A4249_RS01410 at 263.375 kb on + strand, within A4249_RS01410 at 263.375 kb on + strand, within A4249_RS01410 at 263.375 kb on + strand, within A4249_RS01410 at 263.451 kb on - strand, within A4249_RS01410 at 263.553 kb on + strand, within A4249_RS01410 at 263.554 kb on - strand, within A4249_RS01410 at 263.554 kb on - strand, within A4249_RS01410 at 263.554 kb on - strand, within A4249_RS01410 at 263.554 kb on - strand, within A4249_RS01410 at 263.621 kb on + strand, within A4249_RS01410 at 263.622 kb on - strand, within A4249_RS01410 at 263.622 kb on - strand, within A4249_RS01410 at 263.622 kb on - strand, within A4249_RS01410 at 263.622 kb on - strand, within A4249_RS01410 at 263.641 kb on + strand, within A4249_RS01410 at 263.661 kb on - strand, within A4249_RS01410 at 263.661 kb on - strand, within A4249_RS01410 at 263.661 kb on - strand, within A4249_RS01410 at 263.679 kb on - strand, within A4249_RS01410 at 263.679 kb on - strand, within A4249_RS01410 at 263.776 kb on - strand, within A4249_RS01410 at 263.807 kb on - strand, within A4249_RS01410 at 263.807 kb on - strand, within A4249_RS01410
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 259,878 + +0.2 259,940 + -1.7 259,940 + -0.3 259,940 + +0.1 259,940 + +1.7 259,941 - -0.3 259,949 + -1.6 259,949 + -0.4 259,968 + +1.5 259,968 + -0.7 259,968 + +0.2 259,974 + -1.0 259,974 + -0.9 260,887 - -0.3 260,927 + +0.3 260,928 - +0.4 260,928 - -0.3 260,991 + +0.9 260,991 + -0.7 261,075 - A4249_RS01400 0.10 -0.6 261,366 - A4249_RS01400 0.25 -0.2 261,616 + A4249_RS01400 0.38 -1.0 261,616 + A4249_RS01400 0.38 -2.3 261,839 - A4249_RS01400 0.49 -0.3 262,460 - A4249_RS01400 0.81 +1.5 262,460 - A4249_RS01400 0.81 +0.0 262,918 - A4249_RS01405 0.21 -0.1 262,918 - A4249_RS01405 0.21 -0.3 263,015 - A4249_RS01405 0.44 +1.6 263,015 - A4249_RS01405 0.44 +0.5 263,015 - A4249_RS01405 0.44 +0.6 263,015 - A4249_RS01405 0.44 +0.2 263,015 - A4249_RS01405 0.44 +0.2 263,015 - A4249_RS01405 0.44 -0.6 263,015 - A4249_RS01405 0.44 -0.1 263,015 - A4249_RS01405 0.44 +1.5 263,015 - A4249_RS01405 0.44 -0.2 263,015 - A4249_RS01405 0.44 +0.6 263,015 - A4249_RS01405 0.44 +0.6 263,158 - A4249_RS01405 0.79 -0.7 263,158 - A4249_RS01405 0.79 -0.1 263,347 - A4249_RS01410 0.15 -0.9 263,347 - A4249_RS01410 0.15 +0.7 263,347 - A4249_RS01410 0.15 -0.5 263,347 - A4249_RS01410 0.15 -1.0 263,347 - A4249_RS01410 0.15 +0.0 263,347 - A4249_RS01410 0.15 -0.1 263,375 + A4249_RS01410 0.19 -0.3 263,375 + A4249_RS01410 0.19 -1.1 263,375 + A4249_RS01410 0.19 +0.5 263,375 + A4249_RS01410 0.19 +0.1 263,451 - A4249_RS01410 0.31 +0.2 263,553 + A4249_RS01410 0.46 +0.6 263,554 - A4249_RS01410 0.46 +0.2 263,554 - A4249_RS01410 0.46 -0.6 263,554 - A4249_RS01410 0.46 -1.0 263,554 - A4249_RS01410 0.46 -0.6 263,621 + A4249_RS01410 0.56 -0.3 263,622 - A4249_RS01410 0.56 +0.2 263,622 - A4249_RS01410 0.56 +0.3 263,622 - A4249_RS01410 0.56 +0.4 263,622 - A4249_RS01410 0.56 -0.6 263,641 + A4249_RS01410 0.59 +0.4 263,661 - A4249_RS01410 0.62 +0.5 263,661 - A4249_RS01410 0.62 +2.0 263,661 - A4249_RS01410 0.62 -1.9 263,679 - A4249_RS01410 0.65 -0.7 263,679 - A4249_RS01410 0.65 -1.6 263,776 - A4249_RS01410 0.79 -0.5 263,807 - A4249_RS01410 0.84 -0.1 263,807 - A4249_RS01410 0.84 +0.5
Or see this region's nucleotide sequence