Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01280 and A4249_RS01285 are separated by 95 nucleotides A4249_RS01285 and A4249_RS01290 are separated by 56 nucleotides
A4249_RS01280: A4249_RS01280 - major capsid protein, at 243,691 to 244,770
_RS01280
A4249_RS01285: A4249_RS01285 - head decoration protein, at 244,866 to 245,264
_RS01285
A4249_RS01290: A4249_RS01290 - S49 family peptidase, at 245,321 to 246,883
_RS01290
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.887 kb on + strand, within A4249_RS01280 at 243.887 kb on + strand, within A4249_RS01280 at 243.887 kb on + strand, within A4249_RS01280 at 243.887 kb on + strand, within A4249_RS01280 at 243.887 kb on + strand, within A4249_RS01280 at 243.887 kb on + strand, within A4249_RS01280 at 243.888 kb on - strand, within A4249_RS01280 at 243.888 kb on - strand, within A4249_RS01280 at 243.888 kb on - strand, within A4249_RS01280 at 243.920 kb on + strand, within A4249_RS01280 at 243.989 kb on + strand, within A4249_RS01280 at 243.989 kb on + strand, within A4249_RS01280 at 243.990 kb on - strand, within A4249_RS01280 at 243.990 kb on - strand, within A4249_RS01280 at 243.990 kb on - strand, within A4249_RS01280 at 243.990 kb on - strand, within A4249_RS01280 at 243.990 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.094 kb on + strand, within A4249_RS01280 at 244.094 kb on + strand, within A4249_RS01280 at 244.095 kb on - strand, within A4249_RS01280 at 244.095 kb on - strand, within A4249_RS01280 at 244.236 kb on + strand, within A4249_RS01280 at 244.259 kb on + strand, within A4249_RS01280 at 244.259 kb on + strand, within A4249_RS01280 at 244.259 kb on + strand, within A4249_RS01280 at 244.260 kb on - strand, within A4249_RS01280 at 244.301 kb on + strand, within A4249_RS01280 at 244.301 kb on + strand, within A4249_RS01280 at 244.301 kb on + strand, within A4249_RS01280 at 244.301 kb on + strand, within A4249_RS01280 at 244.301 kb on + strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.589 kb on + strand, within A4249_RS01280 at 244.589 kb on + strand, within A4249_RS01280 at 244.589 kb on + strand, within A4249_RS01280 at 244.589 kb on + strand, within A4249_RS01280 at 244.589 kb on + strand, within A4249_RS01280 at 244.589 kb on + strand, within A4249_RS01280 at 244.622 kb on + strand, within A4249_RS01280 at 244.622 kb on + strand, within A4249_RS01280 at 244.622 kb on + strand, within A4249_RS01280 at 244.623 kb on - strand, within A4249_RS01280 at 244.623 kb on - strand, within A4249_RS01280 at 244.623 kb on - strand, within A4249_RS01280 at 244.996 kb on + strand, within A4249_RS01285 at 244.996 kb on + strand, within A4249_RS01285 at 244.996 kb on + strand, within A4249_RS01285 at 244.996 kb on + strand, within A4249_RS01285 at 244.997 kb on - strand, within A4249_RS01285 at 244.997 kb on - strand, within A4249_RS01285 at 244.997 kb on - strand, within A4249_RS01285 at 244.997 kb on - strand, within A4249_RS01285 at 245.054 kb on - strand, within A4249_RS01285 at 245.385 kb on - strand at 245.440 kb on + strand at 245.441 kb on - strand at 245.441 kb on - strand at 245.441 kb on - strand at 245.891 kb on + strand, within A4249_RS01290 at 245.891 kb on + strand, within A4249_RS01290 at 245.891 kb on + strand, within A4249_RS01290 at 245.891 kb on + strand, within A4249_RS01290 at 245.891 kb on + strand, within A4249_RS01290 at 245.892 kb on - strand, within A4249_RS01290 at 246.255 kb on + strand, within A4249_RS01290 at 246.255 kb on + strand, within A4249_RS01290 at 246.255 kb on + strand, within A4249_RS01290 at 246.256 kb on - strand, within A4249_RS01290 at 246.256 kb on - strand, within A4249_RS01290 at 246.256 kb on - strand, within A4249_RS01290 at 246.256 kb on - strand, within A4249_RS01290
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 243,887 + A4249_RS01280 0.18 -1.7 243,887 + A4249_RS01280 0.18 +0.3 243,887 + A4249_RS01280 0.18 +0.0 243,887 + A4249_RS01280 0.18 +0.2 243,887 + A4249_RS01280 0.18 +0.8 243,887 + A4249_RS01280 0.18 -0.6 243,888 - A4249_RS01280 0.18 +0.2 243,888 - A4249_RS01280 0.18 +0.6 243,888 - A4249_RS01280 0.18 -0.1 243,920 + A4249_RS01280 0.21 -0.6 243,989 + A4249_RS01280 0.28 -1.4 243,989 + A4249_RS01280 0.28 +0.6 243,990 - A4249_RS01280 0.28 -0.4 243,990 - A4249_RS01280 0.28 +0.1 243,990 - A4249_RS01280 0.28 +0.1 243,990 - A4249_RS01280 0.28 +0.6 243,990 - A4249_RS01280 0.28 +0.2 244,087 - A4249_RS01280 0.37 -0.4 244,087 - A4249_RS01280 0.37 -0.5 244,087 - A4249_RS01280 0.37 -0.2 244,087 - A4249_RS01280 0.37 -1.2 244,087 - A4249_RS01280 0.37 +0.3 244,087 - A4249_RS01280 0.37 -0.0 244,094 + A4249_RS01280 0.37 -1.4 244,094 + A4249_RS01280 0.37 -0.1 244,095 - A4249_RS01280 0.37 -0.6 244,095 - A4249_RS01280 0.37 -2.1 244,236 + A4249_RS01280 0.50 -0.0 244,259 + A4249_RS01280 0.53 -0.3 244,259 + A4249_RS01280 0.53 -0.7 244,259 + A4249_RS01280 0.53 -0.9 244,260 - A4249_RS01280 0.53 +0.3 244,301 + A4249_RS01280 0.56 -1.3 244,301 + A4249_RS01280 0.56 +1.5 244,301 + A4249_RS01280 0.56 +1.3 244,301 + A4249_RS01280 0.56 +0.1 244,301 + A4249_RS01280 0.56 +0.8 244,302 - A4249_RS01280 0.57 +0.3 244,302 - A4249_RS01280 0.57 +0.8 244,302 - A4249_RS01280 0.57 +0.7 244,302 - A4249_RS01280 0.57 -0.2 244,302 - A4249_RS01280 0.57 +0.0 244,302 - A4249_RS01280 0.57 +1.1 244,302 - A4249_RS01280 0.57 +0.7 244,302 - A4249_RS01280 0.57 -0.1 244,302 - A4249_RS01280 0.57 +0.1 244,302 - A4249_RS01280 0.57 +0.9 244,589 + A4249_RS01280 0.83 -0.0 244,589 + A4249_RS01280 0.83 +0.1 244,589 + A4249_RS01280 0.83 -0.7 244,589 + A4249_RS01280 0.83 -0.6 244,589 + A4249_RS01280 0.83 +1.4 244,589 + A4249_RS01280 0.83 -0.1 244,622 + A4249_RS01280 0.86 +0.4 244,622 + A4249_RS01280 0.86 -1.3 244,622 + A4249_RS01280 0.86 +1.2 244,623 - A4249_RS01280 0.86 -0.4 244,623 - A4249_RS01280 0.86 -0.2 244,623 - A4249_RS01280 0.86 -0.2 244,996 + A4249_RS01285 0.33 -0.6 244,996 + A4249_RS01285 0.33 -1.0 244,996 + A4249_RS01285 0.33 -1.1 244,996 + A4249_RS01285 0.33 -0.3 244,997 - A4249_RS01285 0.33 +0.0 244,997 - A4249_RS01285 0.33 +0.3 244,997 - A4249_RS01285 0.33 -1.1 244,997 - A4249_RS01285 0.33 -1.3 245,054 - A4249_RS01285 0.47 +0.2 245,385 - +0.4 245,440 + -0.3 245,441 - +1.1 245,441 - +2.1 245,441 - -0.0 245,891 + A4249_RS01290 0.36 -0.6 245,891 + A4249_RS01290 0.36 -1.5 245,891 + A4249_RS01290 0.36 -1.1 245,891 + A4249_RS01290 0.36 -2.3 245,891 + A4249_RS01290 0.36 +0.8 245,892 - A4249_RS01290 0.37 -0.2 246,255 + A4249_RS01290 0.60 -0.3 246,255 + A4249_RS01290 0.60 +0.3 246,255 + A4249_RS01290 0.60 -0.4 246,256 - A4249_RS01290 0.60 -1.1 246,256 - A4249_RS01290 0.60 -1.1 246,256 - A4249_RS01290 0.60 -1.1 246,256 - A4249_RS01290 0.60 -1.5
Or see this region's nucleotide sequence