Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01115 and A4249_RS01120 are separated by 110 nucleotides A4249_RS01120 and A4249_RS01125 are separated by 127 nucleotides A4249_RS01125 and A4249_RS01130 are separated by 22 nucleotides
A4249_RS01115: A4249_RS01115 - LysR substrate-binding domain-containing protein, at 213,976 to 214,860
_RS01115
A4249_RS01120: A4249_RS01120 - uracil-DNA glycosylase, at 214,971 to 215,462
_RS01120
A4249_RS01125: A4249_RS01125 - hypothetical protein, at 215,590 to 216,111
_RS01125
A4249_RS01130: A4249_RS01130 - TDT family transporter, at 216,134 to 217,315
_RS01130
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.028 kb on + strand at 214.029 kb on - strand at 214.029 kb on - strand at 214.029 kb on - strand at 214.359 kb on + strand, within A4249_RS01115 at 214.359 kb on + strand, within A4249_RS01115 at 214.360 kb on - strand, within A4249_RS01115 at 214.360 kb on - strand, within A4249_RS01115 at 214.360 kb on - strand, within A4249_RS01115 at 214.964 kb on + strand at 214.965 kb on - strand at 214.988 kb on + strand at 214.988 kb on + strand at 214.988 kb on + strand at 214.988 kb on + strand at 214.989 kb on - strand at 214.989 kb on - strand at 214.989 kb on - strand at 214.989 kb on - strand at 215.248 kb on + strand, within A4249_RS01120 at 215.248 kb on + strand, within A4249_RS01120 at 215.249 kb on - strand, within A4249_RS01120 at 215.249 kb on - strand, within A4249_RS01120 at 215.291 kb on - strand, within A4249_RS01120 at 215.291 kb on - strand, within A4249_RS01120 at 215.672 kb on + strand, within A4249_RS01125 at 215.672 kb on + strand, within A4249_RS01125 at 215.673 kb on - strand, within A4249_RS01125 at 215.806 kb on + strand, within A4249_RS01125 at 215.806 kb on + strand, within A4249_RS01125 at 215.807 kb on - strand, within A4249_RS01125 at 215.934 kb on + strand, within A4249_RS01125 at 215.935 kb on - strand, within A4249_RS01125 at 216.091 kb on + strand at 216.092 kb on - strand at 216.092 kb on - strand at 216.092 kb on - strand at 216.126 kb on - strand at 216.371 kb on + strand, within A4249_RS01130 at 216.371 kb on + strand, within A4249_RS01130 at 216.372 kb on - strand, within A4249_RS01130
Per-strain Table
Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) remove 214,028 + +0.6 214,029 - +2.2 214,029 - -0.8 214,029 - +1.5 214,359 + A4249_RS01115 0.43 +0.5 214,359 + A4249_RS01115 0.43 -0.0 214,360 - A4249_RS01115 0.43 -0.5 214,360 - A4249_RS01115 0.43 -0.3 214,360 - A4249_RS01115 0.43 -2.0 214,964 + +0.5 214,965 - -0.9 214,988 + -1.5 214,988 + +0.0 214,988 + -1.2 214,988 + +1.7 214,989 - -0.3 214,989 - -1.8 214,989 - -0.3 214,989 - -0.1 215,248 + A4249_RS01120 0.56 -0.4 215,248 + A4249_RS01120 0.56 +0.3 215,249 - A4249_RS01120 0.57 +0.1 215,249 - A4249_RS01120 0.57 -0.8 215,291 - A4249_RS01120 0.65 -0.4 215,291 - A4249_RS01120 0.65 -2.0 215,672 + A4249_RS01125 0.16 -0.1 215,672 + A4249_RS01125 0.16 -1.1 215,673 - A4249_RS01125 0.16 +0.5 215,806 + A4249_RS01125 0.41 +0.0 215,806 + A4249_RS01125 0.41 +0.8 215,807 - A4249_RS01125 0.42 -0.3 215,934 + A4249_RS01125 0.66 -1.1 215,935 - A4249_RS01125 0.66 +0.0 216,091 + +0.6 216,092 - -0.9 216,092 - +0.7 216,092 - -1.1 216,126 - +0.9 216,371 + A4249_RS01130 0.20 -0.3 216,371 + A4249_RS01130 0.20 -0.3 216,372 - A4249_RS01130 0.20 -0.1
Or see this region's nucleotide sequence