Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00965

Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00960 and A4249_RS00965 are separated by 100 nucleotidesA4249_RS00965 and A4249_RS00970 overlap by 1 nucleotides A4249_RS00960: A4249_RS00960 - fasciclin domain-containing protein, at 178,954 to 179,850 _RS00960 A4249_RS00965: A4249_RS00965 - glycine--tRNA ligase subunit alpha, at 179,951 to 180,844 _RS00965 A4249_RS00970: A4249_RS00970 - glycine--tRNA ligase subunit beta, at 180,844 to 183,009 _RS00970 Position (kb) 179 180 181Strain fitness (log2 ratio) -1 0 1at 179.389 kb on + strand, within A4249_RS00960at 179.389 kb on + strand, within A4249_RS00960at 179.389 kb on + strand, within A4249_RS00960at 179.389 kb on + strand, within A4249_RS00960at 179.389 kb on + strand, within A4249_RS00960at 179.389 kb on + strand, within A4249_RS00960at 179.389 kb on + strand, within A4249_RS00960at 179.389 kb on + strand, within A4249_RS00960at 179.389 kb on + strand, within A4249_RS00960at 179.390 kb on - strand, within A4249_RS00960at 179.390 kb on - strand, within A4249_RS00960at 179.390 kb on - strand, within A4249_RS00960at 179.390 kb on - strand, within A4249_RS00960at 179.390 kb on - strand, within A4249_RS00960at 179.390 kb on - strand, within A4249_RS00960at 179.390 kb on - strand, within A4249_RS00960at 179.447 kb on + strand, within A4249_RS00960at 179.448 kb on - strand, within A4249_RS00960at 179.908 kb on - strandat 179.908 kb on - strandat 180.815 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
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179,389 + A4249_RS00960 0.48 +0.0
179,389 + A4249_RS00960 0.48 -0.7
179,389 + A4249_RS00960 0.48 +0.2
179,389 + A4249_RS00960 0.48 +0.4
179,389 + A4249_RS00960 0.48 -0.9
179,389 + A4249_RS00960 0.48 +1.1
179,389 + A4249_RS00960 0.48 -0.4
179,389 + A4249_RS00960 0.48 +1.1
179,389 + A4249_RS00960 0.48 -0.5
179,390 - A4249_RS00960 0.49 -0.3
179,390 - A4249_RS00960 0.49 +0.5
179,390 - A4249_RS00960 0.49 +0.1
179,390 - A4249_RS00960 0.49 -0.2
179,390 - A4249_RS00960 0.49 +0.5
179,390 - A4249_RS00960 0.49 -0.5
179,390 - A4249_RS00960 0.49 -0.6
179,447 + A4249_RS00960 0.55 +0.3
179,448 - A4249_RS00960 0.55 -0.1
179,908 - -0.5
179,908 - -0.4
180,815 + +0.2

Or see this region's nucleotide sequence