Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00435

Experiment: HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00425 and A4249_RS00430 are separated by 6 nucleotidesA4249_RS00430 and A4249_RS00435 are separated by 87 nucleotidesA4249_RS00435 and A4249_RS00440 are separated by 26 nucleotidesA4249_RS00440 and A4249_RS00445 are separated by 107 nucleotides A4249_RS00425: A4249_RS00425 - VOC family protein, at 72,319 to 72,702 _RS00425 A4249_RS00430: A4249_RS00430 - glutathione S-transferase family protein, at 72,709 to 73,395 _RS00430 A4249_RS00435: A4249_RS00435 - S-formylglutathione hydrolase, at 73,483 to 74,322 _RS00435 A4249_RS00440: A4249_RS00440 - hypothetical protein, at 74,349 to 74,573 _RS00440 A4249_RS00445: A4249_RS00445 - superoxide dismutase, at 74,681 to 75,292 _RS00445 Position (kb) 73 74 75Strain fitness (log2 ratio) -2 -1 0 1 2at 72.649 kb on + strand, within A4249_RS00425at 72.649 kb on + strand, within A4249_RS00425at 72.650 kb on - strand, within A4249_RS00425at 72.650 kb on - strand, within A4249_RS00425at 72.650 kb on - strand, within A4249_RS00425at 72.797 kb on + strand, within A4249_RS00430at 72.827 kb on + strand, within A4249_RS00430at 72.828 kb on - strand, within A4249_RS00430at 72.828 kb on - strand, within A4249_RS00430at 72.845 kb on + strand, within A4249_RS00430at 72.846 kb on - strand, within A4249_RS00430at 72.846 kb on - strand, within A4249_RS00430at 72.853 kb on + strand, within A4249_RS00430at 72.853 kb on + strand, within A4249_RS00430at 72.853 kb on + strand, within A4249_RS00430at 72.853 kb on + strand, within A4249_RS00430at 72.854 kb on - strand, within A4249_RS00430at 72.854 kb on - strand, within A4249_RS00430at 72.854 kb on - strand, within A4249_RS00430at 72.854 kb on - strand, within A4249_RS00430at 73.095 kb on - strand, within A4249_RS00430at 73.095 kb on - strand, within A4249_RS00430at 73.095 kb on - strand, within A4249_RS00430at 73.095 kb on - strand, within A4249_RS00430at 73.095 kb on - strand, within A4249_RS00430at 73.295 kb on + strand, within A4249_RS00430at 73.295 kb on + strand, within A4249_RS00430at 73.295 kb on + strand, within A4249_RS00430at 73.296 kb on - strand, within A4249_RS00430at 73.296 kb on - strand, within A4249_RS00430at 73.296 kb on - strand, within A4249_RS00430at 73.430 kb on + strandat 73.430 kb on + strandat 73.430 kb on + strandat 73.430 kb on + strandat 73.430 kb on + strandat 73.431 kb on - strandat 73.431 kb on - strandat 73.472 kb on - strandat 73.534 kb on + strandat 73.534 kb on + strandat 73.534 kb on + strandat 73.535 kb on - strandat 73.535 kb on - strandat 73.535 kb on - strandat 73.653 kb on + strand, within A4249_RS00435at 73.678 kb on + strand, within A4249_RS00435at 73.678 kb on + strand, within A4249_RS00435at 73.678 kb on + strand, within A4249_RS00435at 73.679 kb on - strand, within A4249_RS00435at 73.679 kb on - strand, within A4249_RS00435at 73.762 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.789 kb on + strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.790 kb on - strand, within A4249_RS00435at 73.840 kb on + strand, within A4249_RS00435at 73.840 kb on + strand, within A4249_RS00435at 73.840 kb on + strand, within A4249_RS00435at 73.840 kb on + strand, within A4249_RS00435at 73.840 kb on + strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 73.841 kb on - strand, within A4249_RS00435at 74.041 kb on + strand, within A4249_RS00435at 74.042 kb on - strand, within A4249_RS00435at 74.042 kb on - strand, within A4249_RS00435at 74.042 kb on - strand, within A4249_RS00435at 74.042 kb on - strand, within A4249_RS00435at 74.119 kb on + strand, within A4249_RS00435at 74.119 kb on + strand, within A4249_RS00435at 74.119 kb on + strand, within A4249_RS00435at 74.119 kb on + strand, within A4249_RS00435at 74.120 kb on - strand, within A4249_RS00435at 74.120 kb on - strand, within A4249_RS00435at 74.120 kb on - strand, within A4249_RS00435at 74.232 kb on + strand, within A4249_RS00435at 74.232 kb on + strand, within A4249_RS00435at 74.233 kb on - strand, within A4249_RS00435at 74.233 kb on - strand, within A4249_RS00435at 74.234 kb on + strand, within A4249_RS00435at 74.234 kb on + strand, within A4249_RS00435at 74.234 kb on + strand, within A4249_RS00435at 74.235 kb on - strand, within A4249_RS00435at 74.235 kb on - strand, within A4249_RS00435at 74.257 kb on + strandat 74.257 kb on + strandat 74.257 kb on + strandat 74.257 kb on + strandat 74.257 kb on + strandat 74.257 kb on + strandat 74.257 kb on + strandat 74.257 kb on + strandat 74.258 kb on - strandat 74.258 kb on - strandat 74.258 kb on - strandat 74.337 kb on + strandat 74.337 kb on + strandat 74.337 kb on + strandat 74.337 kb on + strandat 74.337 kb on + strandat 74.337 kb on + strandat 74.337 kb on + strandat 74.338 kb on - strandat 74.338 kb on - strandat 74.338 kb on - strandat 74.406 kb on + strand, within A4249_RS00440at 74.407 kb on - strand, within A4249_RS00440at 74.588 kb on + strandat 74.588 kb on + strandat 74.588 kb on + strandat 74.589 kb on - strandat 74.589 kb on - strandat 74.639 kb on + strandat 74.639 kb on + strandat 74.639 kb on + strandat 74.639 kb on + strandat 74.639 kb on + strandat 75.290 kb on + strandat 75.290 kb on + strandat 75.290 kb on + strandat 75.290 kb on + strandat 75.290 kb on + strandat 75.290 kb on + strandat 75.291 kb on - strandat 75.300 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C)
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72,649 + A4249_RS00425 0.86 +0.8
72,649 + A4249_RS00425 0.86 -0.2
72,650 - A4249_RS00425 0.86 -0.7
72,650 - A4249_RS00425 0.86 -0.5
72,650 - A4249_RS00425 0.86 +0.1
72,797 + A4249_RS00430 0.13 +0.6
72,827 + A4249_RS00430 0.17 -0.3
72,828 - A4249_RS00430 0.17 +1.3
72,828 - A4249_RS00430 0.17 -0.7
72,845 + A4249_RS00430 0.20 -0.3
72,846 - A4249_RS00430 0.20 +0.5
72,846 - A4249_RS00430 0.20 +0.0
72,853 + A4249_RS00430 0.21 +0.0
72,853 + A4249_RS00430 0.21 -0.0
72,853 + A4249_RS00430 0.21 +0.0
72,853 + A4249_RS00430 0.21 +0.5
72,854 - A4249_RS00430 0.21 +0.1
72,854 - A4249_RS00430 0.21 -0.5
72,854 - A4249_RS00430 0.21 -2.4
72,854 - A4249_RS00430 0.21 -0.8
73,095 - A4249_RS00430 0.56 -0.1
73,095 - A4249_RS00430 0.56 -0.1
73,095 - A4249_RS00430 0.56 -0.3
73,095 - A4249_RS00430 0.56 -0.1
73,095 - A4249_RS00430 0.56 +1.7
73,295 + A4249_RS00430 0.85 -0.5
73,295 + A4249_RS00430 0.85 -0.2
73,295 + A4249_RS00430 0.85 -1.0
73,296 - A4249_RS00430 0.85 -0.3
73,296 - A4249_RS00430 0.85 +1.3
73,296 - A4249_RS00430 0.85 -1.3
73,430 + -0.5
73,430 + +1.1
73,430 + -0.3
73,430 + +0.7
73,430 + +0.2
73,431 - -0.6
73,431 - -0.5
73,472 - +0.4
73,534 + -1.4
73,534 + +0.4
73,534 + -1.9
73,535 - -0.4
73,535 - -0.0
73,535 - +2.1
73,653 + A4249_RS00435 0.20 +0.1
73,678 + A4249_RS00435 0.23 -0.5
73,678 + A4249_RS00435 0.23 -0.7
73,678 + A4249_RS00435 0.23 -0.4
73,679 - A4249_RS00435 0.23 -0.2
73,679 - A4249_RS00435 0.23 -0.9
73,762 + A4249_RS00435 0.33 -1.1
73,789 + A4249_RS00435 0.36 -0.8
73,789 + A4249_RS00435 0.36 +0.6
73,789 + A4249_RS00435 0.36 +0.3
73,789 + A4249_RS00435 0.36 -0.1
73,789 + A4249_RS00435 0.36 -0.6
73,789 + A4249_RS00435 0.36 -0.1
73,789 + A4249_RS00435 0.36 -1.1
73,789 + A4249_RS00435 0.36 -0.3
73,789 + A4249_RS00435 0.36 +0.2
73,789 + A4249_RS00435 0.36 +0.2
73,789 + A4249_RS00435 0.36 -0.3
73,789 + A4249_RS00435 0.36 +0.5
73,789 + A4249_RS00435 0.36 -0.0
73,789 + A4249_RS00435 0.36 +0.4
73,789 + A4249_RS00435 0.36 -0.7
73,790 - A4249_RS00435 0.37 -0.4
73,790 - A4249_RS00435 0.37 +0.4
73,790 - A4249_RS00435 0.37 +0.3
73,790 - A4249_RS00435 0.37 +0.2
73,790 - A4249_RS00435 0.37 +1.0
73,790 - A4249_RS00435 0.37 -0.3
73,790 - A4249_RS00435 0.37 -0.1
73,790 - A4249_RS00435 0.37 -1.6
73,790 - A4249_RS00435 0.37 -0.3
73,790 - A4249_RS00435 0.37 +0.3
73,790 - A4249_RS00435 0.37 -0.5
73,840 + A4249_RS00435 0.42 +0.2
73,840 + A4249_RS00435 0.42 +0.0
73,840 + A4249_RS00435 0.42 +0.2
73,840 + A4249_RS00435 0.42 +1.2
73,840 + A4249_RS00435 0.42 +0.0
73,841 - A4249_RS00435 0.43 +0.8
73,841 - A4249_RS00435 0.43 +1.1
73,841 - A4249_RS00435 0.43 +1.0
73,841 - A4249_RS00435 0.43 -0.4
73,841 - A4249_RS00435 0.43 -1.6
73,841 - A4249_RS00435 0.43 -0.6
73,841 - A4249_RS00435 0.43 -1.0
73,841 - A4249_RS00435 0.43 -0.5
73,841 - A4249_RS00435 0.43 -2.7
73,841 - A4249_RS00435 0.43 +0.2
73,841 - A4249_RS00435 0.43 -0.7
73,841 - A4249_RS00435 0.43 -0.2
74,041 + A4249_RS00435 0.66 -0.4
74,042 - A4249_RS00435 0.67 +0.6
74,042 - A4249_RS00435 0.67 +0.0
74,042 - A4249_RS00435 0.67 -1.5
74,042 - A4249_RS00435 0.67 +0.5
74,119 + A4249_RS00435 0.76 -0.3
74,119 + A4249_RS00435 0.76 -0.3
74,119 + A4249_RS00435 0.76 +1.5
74,119 + A4249_RS00435 0.76 +0.3
74,120 - A4249_RS00435 0.76 -0.6
74,120 - A4249_RS00435 0.76 +0.1
74,120 - A4249_RS00435 0.76 -1.0
74,232 + A4249_RS00435 0.89 -0.4
74,232 + A4249_RS00435 0.89 +0.7
74,233 - A4249_RS00435 0.89 +0.5
74,233 - A4249_RS00435 0.89 -0.3
74,234 + A4249_RS00435 0.89 -1.4
74,234 + A4249_RS00435 0.89 +0.7
74,234 + A4249_RS00435 0.89 +0.3
74,235 - A4249_RS00435 0.90 -0.4
74,235 - A4249_RS00435 0.90 -0.4
74,257 + +0.2
74,257 + -0.1
74,257 + -0.4
74,257 + -0.4
74,257 + +0.6
74,257 + -0.6
74,257 + -0.2
74,257 + -0.0
74,258 - -0.2
74,258 - -0.6
74,258 - -0.3
74,337 + +0.5
74,337 + -0.4
74,337 + +0.5
74,337 + +1.1
74,337 + +0.0
74,337 + -0.3
74,337 + -0.2
74,338 - +0.7
74,338 - -0.5
74,338 - +0.5
74,406 + A4249_RS00440 0.25 -0.3
74,407 - A4249_RS00440 0.26 -0.4
74,588 + -0.7
74,588 + -0.4
74,588 + +0.5
74,589 - -0.1
74,589 - +0.5
74,639 + -0.6
74,639 + +0.5
74,639 + +0.5
74,639 + +0.5
74,639 + -0.9
75,290 + +0.5
75,290 + -0.5
75,290 + +0.5
75,290 + -0.8
75,290 + +0.1
75,290 + +0.6
75,291 - +0.5
75,300 - -0.7

Or see this region's nucleotide sequence