Experiment: D-Raffinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03839 and BACOVA_03840 overlap by 11 nucleotides BACOVA_03840 and BACOVA_03841 are separated by 354 nucleotides BACOVA_03841 and BACOVA_03842 are separated by 29 nucleotides BACOVA_03842 and BACOVA_03843 are separated by 160 nucleotides
BACOVA_03839: BACOVA_03839 - inner membrane protein CreD, at 187,990 to 189,342
_03839
BACOVA_03840: BACOVA_03840 - hypothetical protein, at 189,332 to 189,445
_03840
BACOVA_03841: BACOVA_03841 - acetyltransferase, GNAT family, at 189,800 to 190,243
_03841
BACOVA_03842: BACOVA_03842 - transcriptional regulator, HxlR family, at 190,273 to 190,623
_03842
BACOVA_03843: BACOVA_03843 - DJ-1/PfpI family protein, at 190,784 to 191,317
_03843
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.807 kb on + strand, within BACOVA_03839 at 188.824 kb on + strand, within BACOVA_03839 at 188.846 kb on - strand, within BACOVA_03839 at 188.918 kb on - strand, within BACOVA_03839 at 188.963 kb on + strand, within BACOVA_03839 at 189.029 kb on - strand, within BACOVA_03839 at 189.032 kb on + strand, within BACOVA_03839 at 189.032 kb on + strand, within BACOVA_03839 at 189.039 kb on - strand, within BACOVA_03839 at 189.039 kb on - strand, within BACOVA_03839 at 189.039 kb on - strand, within BACOVA_03839 at 189.061 kb on + strand, within BACOVA_03839 at 189.062 kb on - strand, within BACOVA_03839 at 189.062 kb on - strand, within BACOVA_03839 at 189.117 kb on - strand, within BACOVA_03839 at 189.132 kb on + strand, within BACOVA_03839 at 189.132 kb on + strand, within BACOVA_03839 at 189.133 kb on - strand, within BACOVA_03839 at 189.135 kb on + strand, within BACOVA_03839 at 189.136 kb on - strand, within BACOVA_03839 at 189.138 kb on - strand, within BACOVA_03839 at 189.154 kb on - strand, within BACOVA_03839 at 189.154 kb on - strand, within BACOVA_03839 at 189.154 kb on - strand, within BACOVA_03839 at 189.188 kb on + strand, within BACOVA_03839 at 189.189 kb on - strand, within BACOVA_03839 at 189.210 kb on + strand at 189.211 kb on - strand at 189.219 kb on + strand at 189.220 kb on - strand at 189.223 kb on + strand at 189.223 kb on + strand at 189.275 kb on + strand at 189.276 kb on - strand at 189.300 kb on - strand at 189.300 kb on - strand at 189.307 kb on + strand at 189.323 kb on + strand at 189.324 kb on - strand at 189.411 kb on - strand, within BACOVA_03840 at 189.457 kb on - strand at 189.472 kb on - strand at 189.477 kb on + strand at 189.480 kb on + strand at 189.480 kb on + strand at 189.481 kb on - strand at 189.481 kb on - strand at 189.486 kb on + strand at 189.488 kb on + strand at 189.489 kb on - strand at 189.489 kb on - strand at 189.489 kb on - strand at 189.489 kb on - strand at 189.494 kb on - strand at 189.579 kb on - strand at 189.610 kb on + strand at 189.610 kb on + strand at 189.610 kb on + strand at 189.628 kb on - strand at 189.643 kb on + strand at 189.643 kb on + strand at 189.649 kb on + strand at 189.668 kb on - strand at 189.697 kb on + strand at 189.698 kb on - strand at 189.698 kb on - strand at 189.702 kb on + strand at 189.711 kb on - strand at 189.713 kb on - strand at 189.716 kb on + strand at 189.732 kb on - strand at 189.819 kb on + strand at 189.819 kb on + strand at 189.819 kb on + strand at 189.819 kb on + strand at 189.820 kb on - strand at 189.820 kb on - strand at 189.821 kb on + strand at 189.821 kb on + strand at 189.822 kb on - strand at 189.827 kb on - strand at 189.853 kb on - strand, within BACOVA_03841 at 189.868 kb on - strand, within BACOVA_03841 at 189.868 kb on - strand, within BACOVA_03841 at 189.945 kb on - strand, within BACOVA_03841 at 189.956 kb on - strand, within BACOVA_03841 at 189.988 kb on - strand, within BACOVA_03841 at 189.991 kb on - strand, within BACOVA_03841 at 190.057 kb on + strand, within BACOVA_03841 at 190.057 kb on + strand, within BACOVA_03841 at 190.071 kb on + strand, within BACOVA_03841 at 190.075 kb on + strand, within BACOVA_03841 at 190.097 kb on + strand, within BACOVA_03841 at 190.126 kb on - strand, within BACOVA_03841 at 190.194 kb on - strand, within BACOVA_03841 at 190.235 kb on + strand at 190.244 kb on - strand at 190.305 kb on + strand at 190.312 kb on - strand, within BACOVA_03842 at 190.344 kb on + strand, within BACOVA_03842 at 190.382 kb on + strand, within BACOVA_03842 at 190.383 kb on - strand, within BACOVA_03842 at 190.411 kb on + strand, within BACOVA_03842 at 190.446 kb on + strand, within BACOVA_03842 at 190.446 kb on + strand, within BACOVA_03842 at 190.456 kb on + strand, within BACOVA_03842 at 190.486 kb on + strand, within BACOVA_03842 at 190.500 kb on + strand, within BACOVA_03842 at 190.501 kb on - strand, within BACOVA_03842 at 190.536 kb on + strand, within BACOVA_03842 at 190.539 kb on + strand, within BACOVA_03842 at 190.539 kb on + strand, within BACOVA_03842 at 190.540 kb on - strand, within BACOVA_03842 at 190.540 kb on - strand, within BACOVA_03842 at 190.664 kb on - strand at 190.674 kb on - strand at 190.693 kb on - strand at 190.784 kb on - strand at 190.843 kb on - strand, within BACOVA_03843 at 190.851 kb on - strand, within BACOVA_03843 at 190.885 kb on + strand, within BACOVA_03843 at 190.885 kb on + strand, within BACOVA_03843 at 190.919 kb on - strand, within BACOVA_03843 at 190.964 kb on - strand, within BACOVA_03843 at 191.022 kb on + strand, within BACOVA_03843 at 191.029 kb on - strand, within BACOVA_03843 at 191.029 kb on - strand, within BACOVA_03843 at 191.055 kb on - strand, within BACOVA_03843 at 191.061 kb on + strand, within BACOVA_03843 at 191.061 kb on + strand, within BACOVA_03843 at 191.173 kb on - strand, within BACOVA_03843 at 191.191 kb on + strand, within BACOVA_03843 at 191.218 kb on + strand, within BACOVA_03843 at 191.225 kb on - strand, within BACOVA_03843 at 191.238 kb on + strand, within BACOVA_03843 at 191.239 kb on - strand, within BACOVA_03843
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 10 mM (C) remove 188,807 + BACOVA_03839 0.60 -0.7 188,824 + BACOVA_03839 0.62 +1.1 188,846 - BACOVA_03839 0.63 +0.7 188,918 - BACOVA_03839 0.69 -1.4 188,963 + BACOVA_03839 0.72 +0.3 189,029 - BACOVA_03839 0.77 +0.2 189,032 + BACOVA_03839 0.77 -0.3 189,032 + BACOVA_03839 0.77 -0.2 189,039 - BACOVA_03839 0.78 +0.1 189,039 - BACOVA_03839 0.78 +0.4 189,039 - BACOVA_03839 0.78 +0.5 189,061 + BACOVA_03839 0.79 -0.1 189,062 - BACOVA_03839 0.79 +0.9 189,062 - BACOVA_03839 0.79 -0.3 189,117 - BACOVA_03839 0.83 -0.2 189,132 + BACOVA_03839 0.84 +1.5 189,132 + BACOVA_03839 0.84 +2.0 189,133 - BACOVA_03839 0.84 +1.3 189,135 + BACOVA_03839 0.85 +0.3 189,136 - BACOVA_03839 0.85 +0.4 189,138 - BACOVA_03839 0.85 +0.4 189,154 - BACOVA_03839 0.86 +0.9 189,154 - BACOVA_03839 0.86 -0.4 189,154 - BACOVA_03839 0.86 +0.5 189,188 + BACOVA_03839 0.89 +0.2 189,189 - BACOVA_03839 0.89 -0.7 189,210 + +0.2 189,211 - +0.5 189,219 + -0.6 189,220 - +0.1 189,223 + +0.9 189,223 + -0.5 189,275 + -0.1 189,276 - -0.7 189,300 - +0.2 189,300 - -0.7 189,307 + -0.8 189,323 + +0.9 189,324 - +0.5 189,411 - BACOVA_03840 0.69 -1.6 189,457 - +0.4 189,472 - -0.2 189,477 + -0.6 189,480 + +0.9 189,480 + +0.2 189,481 - +0.3 189,481 - +1.7 189,486 + +0.6 189,488 + +1.5 189,489 - -1.4 189,489 - -0.5 189,489 - -0.2 189,489 - +0.3 189,494 - -0.4 189,579 - +1.0 189,610 + +0.8 189,610 + -1.1 189,610 + +1.6 189,628 - +0.8 189,643 + -0.0 189,643 + -0.1 189,649 + -0.7 189,668 - +0.3 189,697 + +0.9 189,698 - +0.2 189,698 - +0.3 189,702 + +1.3 189,711 - -1.0 189,713 - +0.1 189,716 + -0.9 189,732 - +0.1 189,819 + -0.2 189,819 + -0.1 189,819 + -0.5 189,819 + +0.3 189,820 - -0.9 189,820 - -0.4 189,821 + +0.6 189,821 + +0.7 189,822 - -1.0 189,827 - +0.3 189,853 - BACOVA_03841 0.12 -0.4 189,868 - BACOVA_03841 0.15 +0.3 189,868 - BACOVA_03841 0.15 +0.5 189,945 - BACOVA_03841 0.33 -0.3 189,956 - BACOVA_03841 0.35 +0.3 189,988 - BACOVA_03841 0.42 -0.7 189,991 - BACOVA_03841 0.43 -0.4 190,057 + BACOVA_03841 0.58 -0.0 190,057 + BACOVA_03841 0.58 -0.0 190,071 + BACOVA_03841 0.61 -0.3 190,075 + BACOVA_03841 0.62 -0.3 190,097 + BACOVA_03841 0.67 -0.1 190,126 - BACOVA_03841 0.73 -0.7 190,194 - BACOVA_03841 0.89 -0.3 190,235 + +0.9 190,244 - -0.6 190,305 + +0.4 190,312 - BACOVA_03842 0.11 +0.5 190,344 + BACOVA_03842 0.20 -0.8 190,382 + BACOVA_03842 0.31 -0.3 190,383 - BACOVA_03842 0.31 -0.1 190,411 + BACOVA_03842 0.39 -0.9 190,446 + BACOVA_03842 0.49 -0.5 190,446 + BACOVA_03842 0.49 -0.4 190,456 + BACOVA_03842 0.52 -0.7 190,486 + BACOVA_03842 0.61 -1.4 190,500 + BACOVA_03842 0.65 -0.0 190,501 - BACOVA_03842 0.65 +0.1 190,536 + BACOVA_03842 0.75 -0.7 190,539 + BACOVA_03842 0.76 +1.6 190,539 + BACOVA_03842 0.76 -0.1 190,540 - BACOVA_03842 0.76 -2.3 190,540 - BACOVA_03842 0.76 +0.2 190,664 - +0.1 190,674 - +0.4 190,693 - +1.2 190,784 - -0.4 190,843 - BACOVA_03843 0.11 -0.1 190,851 - BACOVA_03843 0.13 -0.8 190,885 + BACOVA_03843 0.19 -0.3 190,885 + BACOVA_03843 0.19 +0.8 190,919 - BACOVA_03843 0.25 +0.2 190,964 - BACOVA_03843 0.34 +0.7 191,022 + BACOVA_03843 0.45 +0.2 191,029 - BACOVA_03843 0.46 +0.5 191,029 - BACOVA_03843 0.46 +1.3 191,055 - BACOVA_03843 0.51 -1.4 191,061 + BACOVA_03843 0.52 +1.2 191,061 + BACOVA_03843 0.52 -0.4 191,173 - BACOVA_03843 0.73 -0.3 191,191 + BACOVA_03843 0.76 +0.4 191,218 + BACOVA_03843 0.81 +0.8 191,225 - BACOVA_03843 0.83 -0.8 191,238 + BACOVA_03843 0.85 -0.2 191,239 - BACOVA_03843 0.85 +0.4
Or see this region's nucleotide sequence