Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02204

Experiment: D-Raffinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02200 and BACOVA_02201 are separated by 5 nucleotidesBACOVA_02201 and BACOVA_02202 are separated by 91 nucleotidesBACOVA_02202 and BACOVA_02204 are separated by 112 nucleotidesBACOVA_02204 and BACOVA_02203 overlap by 2 nucleotidesBACOVA_02203 and BACOVA_02205 are separated by 27 nucleotides BACOVA_02200: BACOVA_02200 - transcriptional regulator, AsnC family, at 560,747 to 561,325 _02200 BACOVA_02201: BACOVA_02201 - hypothetical protein, at 561,331 to 561,642 _02201 BACOVA_02202: BACOVA_02202 - tRNA-Met, at 561,734 to 561,807 _02202 BACOVA_02204: BACOVA_02204 - Cof-like hydrolase, at 561,920 to 562,681 _02204 BACOVA_02203: BACOVA_02203 - hypothetical protein, at 562,680 to 562,832 _02203 BACOVA_02205: BACOVA_02205 - Sigma-70 region 2, at 562,860 to 563,363 _02205 Position (kb) 561 562 563Strain fitness (log2 ratio) -2 -1 0 1 2at 561.061 kb on + strand, within BACOVA_02200at 561.062 kb on + strand, within BACOVA_02200at 561.157 kb on + strand, within BACOVA_02200at 561.189 kb on - strand, within BACOVA_02200at 561.253 kb on - strand, within BACOVA_02200at 561.324 kb on - strandat 561.349 kb on + strandat 561.366 kb on - strand, within BACOVA_02201at 561.366 kb on - strand, within BACOVA_02201at 561.434 kb on - strand, within BACOVA_02201at 561.459 kb on - strand, within BACOVA_02201at 561.497 kb on + strand, within BACOVA_02201at 561.498 kb on - strand, within BACOVA_02201at 561.507 kb on + strand, within BACOVA_02201at 561.518 kb on + strand, within BACOVA_02201at 561.518 kb on + strand, within BACOVA_02201at 561.518 kb on + strand, within BACOVA_02201at 561.519 kb on - strand, within BACOVA_02201at 561.519 kb on - strand, within BACOVA_02201at 561.519 kb on - strand, within BACOVA_02201at 561.519 kb on - strand, within BACOVA_02201at 561.519 kb on - strand, within BACOVA_02201at 561.527 kb on + strand, within BACOVA_02201at 561.631 kb on + strandat 561.632 kb on - strandat 561.634 kb on - strandat 561.640 kb on + strandat 561.641 kb on - strandat 561.696 kb on + strandat 561.851 kb on + strandat 561.852 kb on - strandat 561.854 kb on - strandat 561.864 kb on + strandat 561.906 kb on + strandat 561.912 kb on + strandat 561.919 kb on - strandat 561.919 kb on - strandat 561.921 kb on + strandat 561.922 kb on - strandat 561.979 kb on + strandat 562.061 kb on - strand, within BACOVA_02204at 562.144 kb on + strand, within BACOVA_02204at 562.175 kb on + strand, within BACOVA_02204at 562.193 kb on + strand, within BACOVA_02204at 562.221 kb on - strand, within BACOVA_02204at 562.221 kb on - strand, within BACOVA_02204at 562.284 kb on - strand, within BACOVA_02204at 562.284 kb on - strand, within BACOVA_02204at 562.298 kb on + strand, within BACOVA_02204at 562.436 kb on - strand, within BACOVA_02204at 562.466 kb on + strand, within BACOVA_02204at 562.467 kb on - strand, within BACOVA_02204at 562.484 kb on + strand, within BACOVA_02204at 562.524 kb on + strand, within BACOVA_02204at 562.525 kb on - strand, within BACOVA_02204at 562.538 kb on + strand, within BACOVA_02204at 562.538 kb on + strand, within BACOVA_02204at 562.538 kb on + strand, within BACOVA_02204at 562.539 kb on - strand, within BACOVA_02204at 562.571 kb on - strand, within BACOVA_02204at 562.671 kb on - strandat 562.692 kb on - strandat 562.697 kb on - strand, within BACOVA_02203at 562.706 kb on - strand, within BACOVA_02203at 562.760 kb on - strand, within BACOVA_02203at 562.767 kb on - strand, within BACOVA_02203at 562.767 kb on - strand, within BACOVA_02203at 562.768 kb on + strand, within BACOVA_02203at 562.768 kb on + strand, within BACOVA_02203at 562.768 kb on + strand, within BACOVA_02203at 562.769 kb on - strand, within BACOVA_02203at 562.781 kb on + strand, within BACOVA_02203at 562.781 kb on + strand, within BACOVA_02203at 562.782 kb on - strand, within BACOVA_02203at 562.821 kb on + strandat 562.821 kb on + strandat 562.822 kb on - strandat 562.823 kb on + strandat 562.824 kb on - strandat 562.824 kb on - strandat 562.824 kb on - strandat 562.827 kb on + strandat 562.827 kb on + strandat 562.828 kb on - strandat 562.828 kb on - strandat 562.828 kb on - strandat 562.834 kb on - strandat 562.850 kb on + strandat 562.851 kb on - strandat 562.854 kb on + strandat 562.862 kb on - strandat 562.888 kb on - strandat 562.908 kb on + strandat 562.925 kb on + strand, within BACOVA_02205at 562.963 kb on + strand, within BACOVA_02205at 562.985 kb on + strand, within BACOVA_02205at 562.985 kb on + strand, within BACOVA_02205at 563.002 kb on + strand, within BACOVA_02205at 563.003 kb on + strand, within BACOVA_02205at 563.050 kb on + strand, within BACOVA_02205at 563.152 kb on + strand, within BACOVA_02205at 563.157 kb on - strand, within BACOVA_02205at 563.162 kb on + strand, within BACOVA_02205at 563.178 kb on + strand, within BACOVA_02205at 563.180 kb on + strand, within BACOVA_02205at 563.181 kb on - strand, within BACOVA_02205at 563.185 kb on + strand, within BACOVA_02205at 563.185 kb on + strand, within BACOVA_02205at 563.186 kb on - strand, within BACOVA_02205at 563.186 kb on - strand, within BACOVA_02205at 563.186 kb on - strand, within BACOVA_02205at 563.218 kb on + strand, within BACOVA_02205at 563.218 kb on + strand, within BACOVA_02205at 563.219 kb on - strand, within BACOVA_02205at 563.314 kb on - strandat 563.314 kb on - strandat 563.325 kb on + strandat 563.326 kb on - strandat 563.332 kb on - strandat 563.332 kb on - strandat 563.332 kb on - strandat 563.332 kb on - strandat 563.364 kb on - strandat 563.366 kb on - strandat 563.366 kb on - strandat 563.371 kb on - strandat 563.388 kb on - strandat 563.399 kb on + strandat 563.492 kb on + strandat 563.492 kb on + strandat 563.493 kb on - strandat 563.509 kb on + strandat 563.509 kb on + strandat 563.536 kb on - strandat 563.600 kb on + strandat 563.631 kb on + strandat 563.631 kb on + strandat 563.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose 10 mM (C)
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561,061 + BACOVA_02200 0.54 -1.9
561,062 + BACOVA_02200 0.54 -1.9
561,157 + BACOVA_02200 0.71 -2.6
561,189 - BACOVA_02200 0.76 -0.3
561,253 - BACOVA_02200 0.87 +0.1
561,324 - -0.6
561,349 + +0.3
561,366 - BACOVA_02201 0.11 +0.3
561,366 - BACOVA_02201 0.11 +0.4
561,434 - BACOVA_02201 0.33 -0.2
561,459 - BACOVA_02201 0.41 -0.2
561,497 + BACOVA_02201 0.53 -0.1
561,498 - BACOVA_02201 0.54 -0.1
561,507 + BACOVA_02201 0.56 -0.7
561,518 + BACOVA_02201 0.60 +0.5
561,518 + BACOVA_02201 0.60 +0.2
561,518 + BACOVA_02201 0.60 +0.2
561,519 - BACOVA_02201 0.60 +0.2
561,519 - BACOVA_02201 0.60 +0.6
561,519 - BACOVA_02201 0.60 +0.1
561,519 - BACOVA_02201 0.60 +0.8
561,519 - BACOVA_02201 0.60 +0.9
561,527 + BACOVA_02201 0.63 +0.6
561,631 + +0.1
561,632 - -0.2
561,634 - +0.6
561,640 + -0.4
561,641 - +0.6
561,696 + +0.1
561,851 + +0.5
561,852 - +2.0
561,854 - +0.2
561,864 + +0.4
561,906 + +0.9
561,912 + +0.4
561,919 - -0.0
561,919 - +1.8
561,921 + +0.4
561,922 - -0.8
561,979 + +0.5
562,061 - BACOVA_02204 0.19 +1.4
562,144 + BACOVA_02204 0.29 -0.6
562,175 + BACOVA_02204 0.33 +0.2
562,193 + BACOVA_02204 0.36 +0.4
562,221 - BACOVA_02204 0.40 -0.3
562,221 - BACOVA_02204 0.40 +0.6
562,284 - BACOVA_02204 0.48 +0.4
562,284 - BACOVA_02204 0.48 -1.0
562,298 + BACOVA_02204 0.50 -0.2
562,436 - BACOVA_02204 0.68 +0.7
562,466 + BACOVA_02204 0.72 -0.5
562,467 - BACOVA_02204 0.72 +0.9
562,484 + BACOVA_02204 0.74 -0.7
562,524 + BACOVA_02204 0.79 +0.3
562,525 - BACOVA_02204 0.79 +0.6
562,538 + BACOVA_02204 0.81 +0.3
562,538 + BACOVA_02204 0.81 +1.7
562,538 + BACOVA_02204 0.81 +0.3
562,539 - BACOVA_02204 0.81 -0.3
562,571 - BACOVA_02204 0.85 +0.7
562,671 - -0.4
562,692 - +0.6
562,697 - BACOVA_02203 0.11 +0.1
562,706 - BACOVA_02203 0.17 -0.9
562,760 - BACOVA_02203 0.52 +0.0
562,767 - BACOVA_02203 0.57 -1.9
562,767 - BACOVA_02203 0.57 -0.9
562,768 + BACOVA_02203 0.58 -1.0
562,768 + BACOVA_02203 0.58 -0.9
562,768 + BACOVA_02203 0.58 -0.5
562,769 - BACOVA_02203 0.58 +0.4
562,781 + BACOVA_02203 0.66 -0.1
562,781 + BACOVA_02203 0.66 +0.1
562,782 - BACOVA_02203 0.67 -1.4
562,821 + -0.2
562,821 + -0.2
562,822 - +0.4
562,823 + +0.1
562,824 - -0.2
562,824 - -0.2
562,824 - -0.6
562,827 + -0.5
562,827 + +0.0
562,828 - -0.5
562,828 - -0.0
562,828 - -0.6
562,834 - +0.6
562,850 + +1.0
562,851 - -1.2
562,854 + +0.5
562,862 - +0.7
562,888 - -0.3
562,908 + -0.3
562,925 + BACOVA_02205 0.13 +0.2
562,963 + BACOVA_02205 0.20 +0.7
562,985 + BACOVA_02205 0.25 -0.3
562,985 + BACOVA_02205 0.25 -0.3
563,002 + BACOVA_02205 0.28 -0.9
563,003 + BACOVA_02205 0.28 -0.1
563,050 + BACOVA_02205 0.38 -0.4
563,152 + BACOVA_02205 0.58 +0.7
563,157 - BACOVA_02205 0.59 -0.3
563,162 + BACOVA_02205 0.60 +1.1
563,178 + BACOVA_02205 0.63 -0.5
563,180 + BACOVA_02205 0.63 +0.1
563,181 - BACOVA_02205 0.64 +1.1
563,185 + BACOVA_02205 0.64 -1.0
563,185 + BACOVA_02205 0.64 +0.3
563,186 - BACOVA_02205 0.65 +0.2
563,186 - BACOVA_02205 0.65 +0.3
563,186 - BACOVA_02205 0.65 +0.1
563,218 + BACOVA_02205 0.71 +0.1
563,218 + BACOVA_02205 0.71 +1.3
563,219 - BACOVA_02205 0.71 -0.6
563,314 - +0.0
563,314 - +1.5
563,325 + +0.1
563,326 - -0.1
563,332 - +0.6
563,332 - -0.4
563,332 - +0.1
563,332 - -0.8
563,364 - +0.3
563,366 - +0.3
563,366 - +0.1
563,371 - -0.3
563,388 - -0.5
563,399 + +1.3
563,492 + -0.1
563,492 + +0.3
563,493 - -0.6
563,509 + -0.1
563,509 + -0.2
563,536 - -0.2
563,600 + -0.5
563,631 + -1.6
563,631 + -0.0
563,660 - -0.3

Or see this region's nucleotide sequence