Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01329

Experiment: D-Raffinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01328 and BACOVA_01327 overlap by 41 nucleotidesBACOVA_01327 and BACOVA_01329 are separated by 148 nucleotidesBACOVA_01329 and BACOVA_01330 are separated by 208 nucleotides BACOVA_01328: BACOVA_01328 - hypothetical protein, at 133,870 to 135,486 _01328 BACOVA_01327: BACOVA_01327 - hypothetical protein, at 135,446 to 135,574 _01327 BACOVA_01329: BACOVA_01329 - oxidoreductase, aldo/keto reductase family protein, at 135,723 to 136,565 _01329 BACOVA_01330: BACOVA_01330 - hypothetical protein, at 136,774 to 138,726 _01330 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1 2at 134.780 kb on + strand, within BACOVA_01328at 134.780 kb on + strand, within BACOVA_01328at 134.781 kb on - strand, within BACOVA_01328at 134.800 kb on + strand, within BACOVA_01328at 134.801 kb on - strand, within BACOVA_01328at 135.023 kb on - strand, within BACOVA_01328at 135.033 kb on + strand, within BACOVA_01328at 135.034 kb on - strand, within BACOVA_01328at 135.034 kb on - strand, within BACOVA_01328at 135.066 kb on + strand, within BACOVA_01328at 135.093 kb on + strand, within BACOVA_01328at 135.098 kb on - strand, within BACOVA_01328at 135.123 kb on + strand, within BACOVA_01328at 135.124 kb on - strand, within BACOVA_01328at 135.223 kb on + strand, within BACOVA_01328at 135.223 kb on + strand, within BACOVA_01328at 135.223 kb on + strand, within BACOVA_01328at 135.249 kb on + strand, within BACOVA_01328at 135.250 kb on - strand, within BACOVA_01328at 135.294 kb on + strand, within BACOVA_01328at 135.294 kb on + strand, within BACOVA_01328at 135.295 kb on - strand, within BACOVA_01328at 135.349 kb on + strandat 135.349 kb on + strandat 135.349 kb on + strandat 135.350 kb on - strandat 135.350 kb on - strandat 135.350 kb on - strandat 135.353 kb on + strandat 135.354 kb on - strandat 135.403 kb on + strandat 135.403 kb on + strandat 135.451 kb on + strandat 135.463 kb on + strandat 135.464 kb on - strandat 135.477 kb on - strandat 135.481 kb on - strandat 135.508 kb on - strand, within BACOVA_01327at 135.515 kb on + strand, within BACOVA_01327at 135.515 kb on + strand, within BACOVA_01327at 135.557 kb on + strand, within BACOVA_01327at 135.558 kb on - strand, within BACOVA_01327at 135.559 kb on + strand, within BACOVA_01327at 135.618 kb on - strandat 135.623 kb on - strandat 135.626 kb on + strandat 135.651 kb on + strandat 135.660 kb on - strandat 135.713 kb on - strandat 135.733 kb on + strandat 135.814 kb on + strand, within BACOVA_01329at 135.846 kb on - strand, within BACOVA_01329at 135.869 kb on + strand, within BACOVA_01329at 135.884 kb on - strand, within BACOVA_01329at 135.944 kb on - strand, within BACOVA_01329at 135.944 kb on - strand, within BACOVA_01329at 135.974 kb on + strand, within BACOVA_01329at 136.019 kb on + strand, within BACOVA_01329at 136.021 kb on + strand, within BACOVA_01329at 136.028 kb on - strand, within BACOVA_01329at 136.059 kb on + strand, within BACOVA_01329at 136.060 kb on - strand, within BACOVA_01329at 136.069 kb on - strand, within BACOVA_01329at 136.089 kb on + strand, within BACOVA_01329at 136.089 kb on + strand, within BACOVA_01329at 136.090 kb on - strand, within BACOVA_01329at 136.091 kb on + strand, within BACOVA_01329at 136.092 kb on - strand, within BACOVA_01329at 136.092 kb on - strand, within BACOVA_01329at 136.131 kb on + strand, within BACOVA_01329at 136.132 kb on - strand, within BACOVA_01329at 136.132 kb on - strand, within BACOVA_01329at 136.220 kb on - strand, within BACOVA_01329at 136.234 kb on + strand, within BACOVA_01329at 136.245 kb on + strand, within BACOVA_01329at 136.245 kb on + strand, within BACOVA_01329at 136.246 kb on - strand, within BACOVA_01329at 136.250 kb on + strand, within BACOVA_01329at 136.253 kb on + strand, within BACOVA_01329at 136.388 kb on + strand, within BACOVA_01329at 136.389 kb on - strand, within BACOVA_01329at 136.522 kb on - strandat 136.551 kb on - strandat 136.551 kb on - strandat 136.559 kb on + strandat 136.570 kb on - strandat 136.570 kb on - strandat 136.577 kb on - strandat 136.685 kb on - strandat 136.697 kb on + strandat 136.697 kb on + strandat 136.697 kb on + strandat 136.746 kb on + strandat 136.747 kb on - strandat 136.822 kb on + strandat 136.839 kb on + strandat 136.840 kb on - strandat 136.861 kb on - strandat 136.911 kb on - strandat 136.923 kb on + strandat 136.923 kb on + strandat 136.923 kb on + strandat 136.926 kb on - strandat 136.963 kb on - strandat 136.963 kb on - strandat 136.980 kb on + strand, within BACOVA_01330at 137.034 kb on + strand, within BACOVA_01330at 137.036 kb on + strand, within BACOVA_01330at 137.168 kb on + strand, within BACOVA_01330at 137.172 kb on - strand, within BACOVA_01330at 137.238 kb on + strand, within BACOVA_01330at 137.240 kb on + strand, within BACOVA_01330at 137.240 kb on + strand, within BACOVA_01330at 137.240 kb on + strand, within BACOVA_01330at 137.283 kb on + strand, within BACOVA_01330at 137.323 kb on - strand, within BACOVA_01330at 137.344 kb on - strand, within BACOVA_01330at 137.344 kb on - strand, within BACOVA_01330at 137.349 kb on - strand, within BACOVA_01330at 137.349 kb on - strand, within BACOVA_01330at 137.388 kb on + strand, within BACOVA_01330at 137.389 kb on - strand, within BACOVA_01330at 137.389 kb on - strand, within BACOVA_01330at 137.392 kb on + strand, within BACOVA_01330at 137.393 kb on - strand, within BACOVA_01330at 137.393 kb on - strand, within BACOVA_01330at 137.405 kb on + strand, within BACOVA_01330at 137.443 kb on - strand, within BACOVA_01330at 137.457 kb on + strand, within BACOVA_01330at 137.462 kb on - strand, within BACOVA_01330at 137.467 kb on + strand, within BACOVA_01330at 137.507 kb on + strand, within BACOVA_01330at 137.524 kb on - strand, within BACOVA_01330at 137.558 kb on + strand, within BACOVA_01330at 137.559 kb on - strand, within BACOVA_01330at 137.559 kb on - strand, within BACOVA_01330

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose 10 mM (C)
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134,780 + BACOVA_01328 0.56 -0.3
134,780 + BACOVA_01328 0.56 -0.7
134,781 - BACOVA_01328 0.56 -0.1
134,800 + BACOVA_01328 0.58 -0.5
134,801 - BACOVA_01328 0.58 -0.7
135,023 - BACOVA_01328 0.71 +1.4
135,033 + BACOVA_01328 0.72 +0.9
135,034 - BACOVA_01328 0.72 +0.5
135,034 - BACOVA_01328 0.72 -0.0
135,066 + BACOVA_01328 0.74 -0.1
135,093 + BACOVA_01328 0.76 -0.6
135,098 - BACOVA_01328 0.76 +0.6
135,123 + BACOVA_01328 0.77 +0.9
135,124 - BACOVA_01328 0.78 +0.3
135,223 + BACOVA_01328 0.84 +0.3
135,223 + BACOVA_01328 0.84 +0.3
135,223 + BACOVA_01328 0.84 -1.1
135,249 + BACOVA_01328 0.85 -1.1
135,250 - BACOVA_01328 0.85 -0.2
135,294 + BACOVA_01328 0.88 -2.5
135,294 + BACOVA_01328 0.88 -1.6
135,295 - BACOVA_01328 0.88 -1.3
135,349 + -0.1
135,349 + +1.1
135,349 + +0.9
135,350 - -0.2
135,350 - -0.1
135,350 - -0.1
135,353 + +0.6
135,354 - -0.6
135,403 + -0.1
135,403 + -1.1
135,451 + -0.6
135,463 + +2.2
135,464 - -0.1
135,477 - +0.2
135,481 - -0.1
135,508 - BACOVA_01327 0.48 -0.0
135,515 + BACOVA_01327 0.53 +1.0
135,515 + BACOVA_01327 0.53 +1.5
135,557 + BACOVA_01327 0.86 +2.7
135,558 - BACOVA_01327 0.87 -0.1
135,559 + BACOVA_01327 0.88 -0.1
135,618 - +0.9
135,623 - -0.1
135,626 + +0.5
135,651 + -1.5
135,660 - +0.6
135,713 - -0.4
135,733 + +0.0
135,814 + BACOVA_01329 0.11 +0.6
135,846 - BACOVA_01329 0.15 +0.3
135,869 + BACOVA_01329 0.17 +0.5
135,884 - BACOVA_01329 0.19 +0.2
135,944 - BACOVA_01329 0.26 -0.7
135,944 - BACOVA_01329 0.26 -0.8
135,974 + BACOVA_01329 0.30 +0.9
136,019 + BACOVA_01329 0.35 -1.5
136,021 + BACOVA_01329 0.35 +0.9
136,028 - BACOVA_01329 0.36 +0.9
136,059 + BACOVA_01329 0.40 +0.1
136,060 - BACOVA_01329 0.40 -0.1
136,069 - BACOVA_01329 0.41 -0.2
136,089 + BACOVA_01329 0.43 +0.7
136,089 + BACOVA_01329 0.43 -0.7
136,090 - BACOVA_01329 0.44 +0.1
136,091 + BACOVA_01329 0.44 -1.1
136,092 - BACOVA_01329 0.44 +0.3
136,092 - BACOVA_01329 0.44 +2.4
136,131 + BACOVA_01329 0.48 +0.3
136,132 - BACOVA_01329 0.49 -2.0
136,132 - BACOVA_01329 0.49 +1.1
136,220 - BACOVA_01329 0.59 +0.2
136,234 + BACOVA_01329 0.61 -0.5
136,245 + BACOVA_01329 0.62 -0.5
136,245 + BACOVA_01329 0.62 +0.8
136,246 - BACOVA_01329 0.62 +0.3
136,250 + BACOVA_01329 0.63 -0.3
136,253 + BACOVA_01329 0.63 -1.0
136,388 + BACOVA_01329 0.79 +0.3
136,389 - BACOVA_01329 0.79 +0.1
136,522 - -0.4
136,551 - +0.4
136,551 - -0.5
136,559 + -2.6
136,570 - -0.8
136,570 - -1.1
136,577 - +0.3
136,685 - -0.3
136,697 + -0.7
136,697 + -1.2
136,697 + -0.0
136,746 + +0.5
136,747 - +0.2
136,822 + +0.6
136,839 + +1.7
136,840 - +0.2
136,861 - +0.2
136,911 - -0.4
136,923 + -0.1
136,923 + -0.1
136,923 + -0.5
136,926 - -0.1
136,963 - -0.8
136,963 - +0.1
136,980 + BACOVA_01330 0.11 +0.1
137,034 + BACOVA_01330 0.13 +0.7
137,036 + BACOVA_01330 0.13 -1.2
137,168 + BACOVA_01330 0.20 +0.1
137,172 - BACOVA_01330 0.20 -0.2
137,238 + BACOVA_01330 0.24 -0.5
137,240 + BACOVA_01330 0.24 -1.5
137,240 + BACOVA_01330 0.24 +0.1
137,240 + BACOVA_01330 0.24 -0.9
137,283 + BACOVA_01330 0.26 -0.7
137,323 - BACOVA_01330 0.28 +0.4
137,344 - BACOVA_01330 0.29 -1.3
137,344 - BACOVA_01330 0.29 -0.2
137,349 - BACOVA_01330 0.29 -0.1
137,349 - BACOVA_01330 0.29 +0.3
137,388 + BACOVA_01330 0.31 -0.3
137,389 - BACOVA_01330 0.31 -0.5
137,389 - BACOVA_01330 0.31 -0.1
137,392 + BACOVA_01330 0.32 +0.1
137,393 - BACOVA_01330 0.32 -0.1
137,393 - BACOVA_01330 0.32 -0.6
137,405 + BACOVA_01330 0.32 +0.1
137,443 - BACOVA_01330 0.34 +0.7
137,457 + BACOVA_01330 0.35 +0.4
137,462 - BACOVA_01330 0.35 -0.6
137,467 + BACOVA_01330 0.35 +0.9
137,507 + BACOVA_01330 0.38 -1.3
137,524 - BACOVA_01330 0.38 -1.1
137,558 + BACOVA_01330 0.40 -2.1
137,559 - BACOVA_01330 0.40 +0.3
137,559 - BACOVA_01330 0.40 +0.3

Or see this region's nucleotide sequence