Experiment: D-Raffinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01253 and BACOVA_01254 are separated by 15 nucleotides BACOVA_01254 and BACOVA_01255 are separated by 66 nucleotides BACOVA_01255 and BACOVA_01256 are separated by 75 nucleotides
BACOVA_01253: BACOVA_01253 - cytochrome C biogenesis protein transmembrane region, at 38,281 to 40,338
_01253
BACOVA_01254: BACOVA_01254 - stress responsive A/B barrel domain protein, at 40,354 to 40,653
_01254
BACOVA_01255: BACOVA_01255 - uridine kinase, at 40,720 to 41,373
_01255
BACOVA_01256: BACOVA_01256 - transglycosylase SLT domain protein, at 41,449 to 42,789
_01256
Position (kb) 40
41 Strain fitness (log2 ratio) -2
-1
0
1 at 40.365 kb on - strand at 40.510 kb on - strand, within BACOVA_01254 at 40.634 kb on - strand at 40.637 kb on - strand at 40.682 kb on - strand at 40.684 kb on - strand at 40.713 kb on - strand at 40.716 kb on - strand at 40.719 kb on - strand at 40.748 kb on - strand at 40.749 kb on + strand at 40.756 kb on - strand at 40.756 kb on - strand at 40.767 kb on - strand at 40.778 kb on + strand at 40.778 kb on + strand at 40.778 kb on + strand at 40.778 kb on + strand at 40.850 kb on + strand, within BACOVA_01255 at 40.854 kb on - strand, within BACOVA_01255 at 40.873 kb on + strand, within BACOVA_01255 at 40.887 kb on + strand, within BACOVA_01255 at 40.888 kb on - strand, within BACOVA_01255 at 40.918 kb on - strand, within BACOVA_01255 at 41.011 kb on + strand, within BACOVA_01255 at 41.017 kb on + strand, within BACOVA_01255 at 41.018 kb on - strand, within BACOVA_01255 at 41.053 kb on - strand, within BACOVA_01255 at 41.096 kb on + strand, within BACOVA_01255 at 41.097 kb on - strand, within BACOVA_01255 at 41.097 kb on - strand, within BACOVA_01255 at 41.103 kb on + strand, within BACOVA_01255 at 41.118 kb on + strand, within BACOVA_01255 at 41.119 kb on - strand, within BACOVA_01255 at 41.230 kb on + strand, within BACOVA_01255 at 41.232 kb on + strand, within BACOVA_01255 at 41.233 kb on - strand, within BACOVA_01255 at 41.233 kb on - strand, within BACOVA_01255 at 41.233 kb on - strand, within BACOVA_01255 at 41.251 kb on - strand, within BACOVA_01255 at 41.285 kb on - strand, within BACOVA_01255 at 41.329 kb on - strand at 41.329 kb on - strand at 41.329 kb on - strand at 41.329 kb on - strand at 41.334 kb on + strand at 41.335 kb on - strand at 41.336 kb on + strand at 41.343 kb on + strand at 41.343 kb on + strand at 41.344 kb on - strand at 41.419 kb on - strand at 41.426 kb on + strand at 41.439 kb on - strand at 41.449 kb on - strand at 41.475 kb on + strand at 41.521 kb on - strand at 41.546 kb on + strand at 41.547 kb on - strand at 41.547 kb on - strand at 41.548 kb on + strand at 41.548 kb on + strand at 41.548 kb on + strand at 41.549 kb on - strand at 41.549 kb on - strand at 41.549 kb on - strand at 41.551 kb on - strand at 41.563 kb on + strand at 41.564 kb on - strand at 41.564 kb on - strand at 41.607 kb on + strand, within BACOVA_01256 at 41.644 kb on - strand, within BACOVA_01256
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 10 mM (C) remove 40,365 - -0.1 40,510 - BACOVA_01254 0.52 +1.2 40,634 - -2.1 40,637 - -0.7 40,682 - -1.1 40,684 - +0.1 40,713 - -0.7 40,716 - -0.1 40,719 - -1.7 40,748 - -0.6 40,749 + -1.1 40,756 - -2.5 40,756 - +0.1 40,767 - -0.5 40,778 + +1.1 40,778 + -1.8 40,778 + -0.1 40,778 + -1.1 40,850 + BACOVA_01255 0.20 -1.4 40,854 - BACOVA_01255 0.20 -1.9 40,873 + BACOVA_01255 0.23 -0.3 40,887 + BACOVA_01255 0.26 -1.5 40,888 - BACOVA_01255 0.26 -1.4 40,918 - BACOVA_01255 0.30 -0.1 41,011 + BACOVA_01255 0.44 +0.0 41,017 + BACOVA_01255 0.45 -1.1 41,018 - BACOVA_01255 0.46 -0.7 41,053 - BACOVA_01255 0.51 -0.7 41,096 + BACOVA_01255 0.57 +1.0 41,097 - BACOVA_01255 0.58 -0.1 41,097 - BACOVA_01255 0.58 -2.1 41,103 + BACOVA_01255 0.59 +0.1 41,118 + BACOVA_01255 0.61 +1.6 41,119 - BACOVA_01255 0.61 +0.2 41,230 + BACOVA_01255 0.78 -0.7 41,232 + BACOVA_01255 0.78 +0.3 41,233 - BACOVA_01255 0.78 -0.2 41,233 - BACOVA_01255 0.78 -0.1 41,233 - BACOVA_01255 0.78 -0.3 41,251 - BACOVA_01255 0.81 -1.1 41,285 - BACOVA_01255 0.86 -1.7 41,329 - -0.5 41,329 - +1.7 41,329 - -0.7 41,329 - +0.3 41,334 + -2.0 41,335 - -0.7 41,336 + -0.7 41,343 + -0.0 41,343 + +0.0 41,344 - -0.5 41,419 - -0.4 41,426 + -0.2 41,439 - +0.4 41,449 - -0.9 41,475 + -0.9 41,521 - -0.4 41,546 + -2.2 41,547 - -0.1 41,547 - -0.9 41,548 + -0.1 41,548 + +0.1 41,548 + +0.9 41,549 - +0.6 41,549 - +0.3 41,549 - -0.2 41,551 - +0.5 41,563 + -0.1 41,564 - -1.4 41,564 - -0.5 41,607 + BACOVA_01256 0.12 -0.8 41,644 - BACOVA_01256 0.15 -1.1
Or see this region's nucleotide sequence