Experiment: D-Maltose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05349 and BACOVA_05350 are separated by 21 nucleotides BACOVA_05350 and BACOVA_05351 are separated by 44 nucleotides BACOVA_05351 and BACOVA_05354 are separated by 82 nucleotides BACOVA_05354 and BACOVA_05352 overlap by 202 nucleotides BACOVA_05352 and BACOVA_05353 are separated by 59 nucleotides BACOVA_05353 and BACOVA_05355 overlap by 50 nucleotides BACOVA_05355 and BACOVA_05356 are separated by 155 nucleotides
BACOVA_05349: BACOVA_05349 - efflux transporter, RND family, MFP subunit, at 838,652 to 839,731
_05349
BACOVA_05350: BACOVA_05350 - outer membrane efflux protein, at 839,753 to 841,237
_05350
BACOVA_05351: BACOVA_05351 - hypothetical protein, at 841,282 to 841,401
_05351
BACOVA_05354: BACOVA_05354 - hypothetical protein, at 841,484 to 841,726
_05354
BACOVA_05352: BACOVA_05352 - hypothetical protein, at 841,525 to 841,665
_05352
BACOVA_05353: BACOVA_05353 - hypothetical protein, at 841,725 to 841,874
_05353
BACOVA_05355: BACOVA_05355 - hypothetical protein, at 841,825 to 841,956
_05355
BACOVA_05356: BACOVA_05356 - hypothetical protein, at 842,112 to 843,113
_05356
Position (kb) 839
840
841
842 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 838.771 kb on + strand, within BACOVA_05349 at 838.774 kb on + strand, within BACOVA_05349 at 838.774 kb on + strand, within BACOVA_05349 at 838.781 kb on - strand, within BACOVA_05349 at 838.781 kb on - strand, within BACOVA_05349 at 838.819 kb on + strand, within BACOVA_05349 at 838.822 kb on - strand, within BACOVA_05349 at 838.932 kb on - strand, within BACOVA_05349 at 838.932 kb on - strand, within BACOVA_05349 at 838.940 kb on - strand, within BACOVA_05349 at 838.943 kb on - strand, within BACOVA_05349 at 838.945 kb on - strand, within BACOVA_05349 at 838.948 kb on + strand, within BACOVA_05349 at 838.949 kb on - strand, within BACOVA_05349 at 838.952 kb on + strand, within BACOVA_05349 at 838.953 kb on - strand, within BACOVA_05349 at 839.096 kb on + strand, within BACOVA_05349 at 839.099 kb on + strand, within BACOVA_05349 at 839.099 kb on + strand, within BACOVA_05349 at 839.144 kb on + strand, within BACOVA_05349 at 839.166 kb on + strand, within BACOVA_05349 at 839.167 kb on - strand, within BACOVA_05349 at 839.168 kb on + strand, within BACOVA_05349 at 839.169 kb on - strand, within BACOVA_05349 at 839.169 kb on - strand, within BACOVA_05349 at 839.217 kb on + strand, within BACOVA_05349 at 839.224 kb on + strand, within BACOVA_05349 at 839.225 kb on - strand, within BACOVA_05349 at 839.250 kb on - strand, within BACOVA_05349 at 839.290 kb on + strand, within BACOVA_05349 at 839.353 kb on + strand, within BACOVA_05349 at 839.353 kb on + strand, within BACOVA_05349 at 839.461 kb on + strand, within BACOVA_05349 at 839.462 kb on - strand, within BACOVA_05349 at 839.475 kb on - strand, within BACOVA_05349 at 839.475 kb on - strand, within BACOVA_05349 at 839.476 kb on + strand, within BACOVA_05349 at 839.491 kb on + strand, within BACOVA_05349 at 839.514 kb on - strand, within BACOVA_05349 at 839.548 kb on + strand, within BACOVA_05349 at 839.548 kb on + strand, within BACOVA_05349 at 839.553 kb on - strand, within BACOVA_05349 at 839.585 kb on + strand, within BACOVA_05349 at 839.586 kb on - strand, within BACOVA_05349 at 839.602 kb on + strand, within BACOVA_05349 at 839.603 kb on - strand, within BACOVA_05349 at 839.713 kb on - strand at 839.731 kb on + strand at 839.755 kb on - strand at 839.788 kb on + strand at 839.812 kb on - strand at 839.814 kb on - strand at 839.868 kb on - strand at 839.869 kb on + strand at 839.869 kb on + strand at 839.870 kb on - strand at 839.870 kb on - strand at 839.870 kb on - strand at 839.870 kb on - strand at 839.872 kb on - strand at 839.959 kb on + strand, within BACOVA_05350 at 839.960 kb on - strand, within BACOVA_05350 at 839.960 kb on - strand, within BACOVA_05350 at 839.964 kb on + strand, within BACOVA_05350 at 839.999 kb on + strand, within BACOVA_05350 at 840.040 kb on + strand, within BACOVA_05350 at 840.041 kb on - strand, within BACOVA_05350 at 840.050 kb on - strand, within BACOVA_05350 at 840.197 kb on + strand, within BACOVA_05350 at 840.205 kb on - strand, within BACOVA_05350 at 840.205 kb on - strand, within BACOVA_05350 at 840.293 kb on + strand, within BACOVA_05350 at 840.354 kb on - strand, within BACOVA_05350 at 840.362 kb on - strand, within BACOVA_05350 at 840.368 kb on + strand, within BACOVA_05350 at 840.369 kb on - strand, within BACOVA_05350 at 840.402 kb on - strand, within BACOVA_05350 at 840.416 kb on + strand, within BACOVA_05350 at 840.416 kb on + strand, within BACOVA_05350 at 840.497 kb on - strand, within BACOVA_05350 at 840.507 kb on - strand, within BACOVA_05350 at 840.539 kb on + strand, within BACOVA_05350 at 840.543 kb on - strand, within BACOVA_05350 at 840.590 kb on - strand, within BACOVA_05350 at 840.594 kb on + strand, within BACOVA_05350 at 840.595 kb on - strand, within BACOVA_05350 at 840.676 kb on + strand, within BACOVA_05350 at 840.677 kb on - strand, within BACOVA_05350 at 840.689 kb on + strand, within BACOVA_05350 at 840.691 kb on + strand, within BACOVA_05350 at 840.691 kb on + strand, within BACOVA_05350 at 840.711 kb on + strand, within BACOVA_05350 at 840.714 kb on - strand, within BACOVA_05350 at 840.732 kb on + strand, within BACOVA_05350 at 840.765 kb on - strand, within BACOVA_05350 at 840.772 kb on + strand, within BACOVA_05350 at 840.773 kb on - strand, within BACOVA_05350 at 840.783 kb on - strand, within BACOVA_05350 at 840.795 kb on + strand, within BACOVA_05350 at 840.805 kb on + strand, within BACOVA_05350 at 840.805 kb on + strand, within BACOVA_05350 at 840.805 kb on + strand, within BACOVA_05350 at 840.806 kb on - strand, within BACOVA_05350 at 840.822 kb on + strand, within BACOVA_05350 at 840.823 kb on - strand, within BACOVA_05350 at 840.871 kb on + strand, within BACOVA_05350 at 840.871 kb on + strand, within BACOVA_05350 at 840.871 kb on + strand, within BACOVA_05350 at 840.871 kb on + strand, within BACOVA_05350 at 840.871 kb on + strand, within BACOVA_05350 at 840.871 kb on + strand, within BACOVA_05350 at 840.884 kb on - strand, within BACOVA_05350 at 840.902 kb on - strand, within BACOVA_05350 at 840.911 kb on + strand, within BACOVA_05350 at 840.920 kb on - strand, within BACOVA_05350 at 840.920 kb on - strand, within BACOVA_05350 at 840.929 kb on - strand, within BACOVA_05350 at 840.931 kb on + strand, within BACOVA_05350 at 840.932 kb on - strand, within BACOVA_05350 at 840.954 kb on + strand, within BACOVA_05350 at 840.993 kb on - strand, within BACOVA_05350 at 840.993 kb on - strand, within BACOVA_05350 at 841.006 kb on - strand, within BACOVA_05350 at 841.006 kb on - strand, within BACOVA_05350 at 841.031 kb on - strand, within BACOVA_05350 at 841.056 kb on + strand, within BACOVA_05350 at 841.074 kb on + strand, within BACOVA_05350 at 841.074 kb on + strand, within BACOVA_05350 at 841.154 kb on + strand at 841.156 kb on + strand at 841.157 kb on - strand at 841.193 kb on - strand at 841.199 kb on + strand at 841.199 kb on + strand at 841.208 kb on + strand at 841.220 kb on + strand at 841.220 kb on + strand at 841.220 kb on + strand at 841.221 kb on - strand at 841.223 kb on + strand at 841.224 kb on - strand at 841.224 kb on - strand at 841.270 kb on - strand at 841.333 kb on - strand, within BACOVA_05351 at 841.356 kb on - strand, within BACOVA_05351 at 841.356 kb on - strand, within BACOVA_05351 at 841.363 kb on + strand, within BACOVA_05351 at 841.369 kb on - strand, within BACOVA_05351 at 841.418 kb on + strand at 841.420 kb on + strand at 841.421 kb on - strand at 841.507 kb on + strand at 841.610 kb on + strand at 841.615 kb on + strand at 841.615 kb on + strand at 841.615 kb on + strand at 841.616 kb on - strand at 841.687 kb on - strand at 841.695 kb on + strand at 841.704 kb on - strand at 841.742 kb on + strand, within BACOVA_05353 at 841.748 kb on - strand, within BACOVA_05353 at 841.748 kb on - strand, within BACOVA_05353 at 841.763 kb on + strand, within BACOVA_05353 at 841.777 kb on + strand, within BACOVA_05353 at 841.778 kb on - strand, within BACOVA_05353 at 841.854 kb on - strand at 841.889 kb on - strand, within BACOVA_05355 at 841.987 kb on - strand at 842.042 kb on + strand at 842.081 kb on + strand at 842.087 kb on + strand at 842.088 kb on - strand at 842.130 kb on - strand at 842.162 kb on + strand at 842.162 kb on + strand at 842.163 kb on - strand at 842.177 kb on + strand at 842.178 kb on - strand at 842.180 kb on - strand at 842.183 kb on - strand at 842.224 kb on - strand, within BACOVA_05356 at 842.230 kb on + strand, within BACOVA_05356 at 842.231 kb on - strand, within BACOVA_05356
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mM (C) remove 838,771 + BACOVA_05349 0.11 +0.1 838,774 + BACOVA_05349 0.11 +0.3 838,774 + BACOVA_05349 0.11 -0.2 838,781 - BACOVA_05349 0.12 +1.1 838,781 - BACOVA_05349 0.12 +0.7 838,819 + BACOVA_05349 0.15 -0.4 838,822 - BACOVA_05349 0.16 +0.1 838,932 - BACOVA_05349 0.26 -0.3 838,932 - BACOVA_05349 0.26 -0.6 838,940 - BACOVA_05349 0.27 -0.1 838,943 - BACOVA_05349 0.27 -0.6 838,945 - BACOVA_05349 0.27 -1.3 838,948 + BACOVA_05349 0.27 +0.7 838,949 - BACOVA_05349 0.28 +0.3 838,952 + BACOVA_05349 0.28 +1.3 838,953 - BACOVA_05349 0.28 -0.5 839,096 + BACOVA_05349 0.41 -0.3 839,099 + BACOVA_05349 0.41 +1.1 839,099 + BACOVA_05349 0.41 +0.4 839,144 + BACOVA_05349 0.46 -0.0 839,166 + BACOVA_05349 0.48 +0.7 839,167 - BACOVA_05349 0.48 +0.3 839,168 + BACOVA_05349 0.48 -0.0 839,169 - BACOVA_05349 0.48 -0.0 839,169 - BACOVA_05349 0.48 +0.7 839,217 + BACOVA_05349 0.52 -0.2 839,224 + BACOVA_05349 0.53 +0.1 839,225 - BACOVA_05349 0.53 -0.3 839,250 - BACOVA_05349 0.55 -0.3 839,290 + BACOVA_05349 0.59 -0.3 839,353 + BACOVA_05349 0.65 +1.4 839,353 + BACOVA_05349 0.65 -0.1 839,461 + BACOVA_05349 0.75 -0.6 839,462 - BACOVA_05349 0.75 -0.2 839,475 - BACOVA_05349 0.76 +0.1 839,475 - BACOVA_05349 0.76 -0.3 839,476 + BACOVA_05349 0.76 +0.7 839,491 + BACOVA_05349 0.78 +0.2 839,514 - BACOVA_05349 0.80 -1.6 839,548 + BACOVA_05349 0.83 +0.1 839,548 + BACOVA_05349 0.83 -0.0 839,553 - BACOVA_05349 0.83 +0.4 839,585 + BACOVA_05349 0.86 -1.2 839,586 - BACOVA_05349 0.86 -0.4 839,602 + BACOVA_05349 0.88 +0.2 839,603 - BACOVA_05349 0.88 -0.3 839,713 - +0.5 839,731 + +0.9 839,755 - -0.7 839,788 + -0.5 839,812 - -0.3 839,814 - -0.3 839,868 - +0.7 839,869 + +0.3 839,869 + +0.1 839,870 - -2.0 839,870 - +0.7 839,870 - -1.6 839,870 - -0.5 839,872 - -0.8 839,959 + BACOVA_05350 0.14 -0.6 839,960 - BACOVA_05350 0.14 -1.5 839,960 - BACOVA_05350 0.14 -0.7 839,964 + BACOVA_05350 0.14 -1.3 839,999 + BACOVA_05350 0.17 -0.9 840,040 + BACOVA_05350 0.19 +0.2 840,041 - BACOVA_05350 0.19 +0.7 840,050 - BACOVA_05350 0.20 +0.2 840,197 + BACOVA_05350 0.30 -0.2 840,205 - BACOVA_05350 0.30 -0.4 840,205 - BACOVA_05350 0.30 +0.4 840,293 + BACOVA_05350 0.36 +0.4 840,354 - BACOVA_05350 0.40 -0.9 840,362 - BACOVA_05350 0.41 -0.9 840,368 + BACOVA_05350 0.41 -0.4 840,369 - BACOVA_05350 0.41 -0.9 840,402 - BACOVA_05350 0.44 -0.3 840,416 + BACOVA_05350 0.45 +0.4 840,416 + BACOVA_05350 0.45 +0.1 840,497 - BACOVA_05350 0.50 -0.3 840,507 - BACOVA_05350 0.51 -1.1 840,539 + BACOVA_05350 0.53 -2.0 840,543 - BACOVA_05350 0.53 +0.1 840,590 - BACOVA_05350 0.56 -0.4 840,594 + BACOVA_05350 0.57 +0.1 840,595 - BACOVA_05350 0.57 -0.2 840,676 + BACOVA_05350 0.62 -0.8 840,677 - BACOVA_05350 0.62 -0.3 840,689 + BACOVA_05350 0.63 -1.0 840,691 + BACOVA_05350 0.63 -0.8 840,691 + BACOVA_05350 0.63 +0.3 840,711 + BACOVA_05350 0.65 +0.7 840,714 - BACOVA_05350 0.65 -0.6 840,732 + BACOVA_05350 0.66 -0.5 840,765 - BACOVA_05350 0.68 +1.7 840,772 + BACOVA_05350 0.69 -0.1 840,773 - BACOVA_05350 0.69 +0.3 840,783 - BACOVA_05350 0.69 +0.6 840,795 + BACOVA_05350 0.70 +0.0 840,805 + BACOVA_05350 0.71 +0.4 840,805 + BACOVA_05350 0.71 -0.1 840,805 + BACOVA_05350 0.71 +0.7 840,806 - BACOVA_05350 0.71 +0.1 840,822 + BACOVA_05350 0.72 +0.2 840,823 - BACOVA_05350 0.72 +0.8 840,871 + BACOVA_05350 0.75 -0.8 840,871 + BACOVA_05350 0.75 -0.3 840,871 + BACOVA_05350 0.75 -1.5 840,871 + BACOVA_05350 0.75 +0.4 840,871 + BACOVA_05350 0.75 +0.0 840,871 + BACOVA_05350 0.75 +0.5 840,884 - BACOVA_05350 0.76 -1.0 840,902 - BACOVA_05350 0.77 -0.0 840,911 + BACOVA_05350 0.78 -0.7 840,920 - BACOVA_05350 0.79 -0.3 840,920 - BACOVA_05350 0.79 -0.9 840,929 - BACOVA_05350 0.79 -0.8 840,931 + BACOVA_05350 0.79 +0.4 840,932 - BACOVA_05350 0.79 +0.7 840,954 + BACOVA_05350 0.81 -0.5 840,993 - BACOVA_05350 0.84 -1.7 840,993 - BACOVA_05350 0.84 -2.0 841,006 - BACOVA_05350 0.84 +1.1 841,006 - BACOVA_05350 0.84 -0.9 841,031 - BACOVA_05350 0.86 -0.5 841,056 + BACOVA_05350 0.88 -0.9 841,074 + BACOVA_05350 0.89 -0.3 841,074 + BACOVA_05350 0.89 -0.2 841,154 + -0.8 841,156 + -0.7 841,157 - +1.4 841,193 - +0.6 841,199 + +1.3 841,199 + +0.5 841,208 + -0.7 841,220 + +0.3 841,220 + +0.7 841,220 + -0.3 841,221 - -0.9 841,223 + -0.7 841,224 - -0.3 841,224 - -0.7 841,270 - +0.3 841,333 - BACOVA_05351 0.42 -1.1 841,356 - BACOVA_05351 0.62 -1.1 841,356 - BACOVA_05351 0.62 -0.9 841,363 + BACOVA_05351 0.68 -0.8 841,369 - BACOVA_05351 0.72 +0.7 841,418 + -0.4 841,420 + -0.0 841,421 - -1.1 841,507 + -0.4 841,610 + +0.7 841,615 + +0.7 841,615 + -1.9 841,615 + -0.4 841,616 - -1.1 841,687 - -1.5 841,695 + -0.6 841,704 - +1.9 841,742 + BACOVA_05353 0.11 +0.6 841,748 - BACOVA_05353 0.15 +0.4 841,748 - BACOVA_05353 0.15 -1.1 841,763 + BACOVA_05353 0.25 +0.1 841,777 + BACOVA_05353 0.35 -1.6 841,778 - BACOVA_05353 0.35 -0.7 841,854 - -0.0 841,889 - BACOVA_05355 0.48 +0.2 841,987 - +0.7 842,042 + +0.6 842,081 + -0.1 842,087 + -0.8 842,088 - -0.1 842,130 - -0.3 842,162 + -1.2 842,162 + -0.3 842,163 - +0.6 842,177 + +0.1 842,178 - -4.7 842,180 - -0.7 842,183 - +0.3 842,224 - BACOVA_05356 0.11 -0.6 842,230 + BACOVA_05356 0.12 +0.7 842,231 - BACOVA_05356 0.12 +0.9
Or see this region's nucleotide sequence