Experiment: D-Maltose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02983 and BACOVA_02984 are separated by 226 nucleotides BACOVA_02984 and BACOVA_02985 are separated by 101 nucleotides BACOVA_02985 and BACOVA_02986 are separated by 101 nucleotides
BACOVA_02983: BACOVA_02983 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 62,081 to 63,529
_02983
BACOVA_02984: BACOVA_02984 - GMP synthase (glutamine-hydrolyzing) domain protein, at 63,756 to 65,063
_02984
BACOVA_02985: BACOVA_02985 - hypothetical protein, at 65,165 to 65,356
_02985
BACOVA_02986: BACOVA_02986 - site-specific recombinase, phage integrase family, at 65,458 to 66,675
_02986
Position (kb) 63
64
65
66 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 62.756 kb on + strand, within BACOVA_02983 at 62.756 kb on + strand, within BACOVA_02983 at 62.820 kb on + strand, within BACOVA_02983 at 62.830 kb on + strand, within BACOVA_02983 at 62.830 kb on + strand, within BACOVA_02983 at 62.830 kb on + strand, within BACOVA_02983 at 62.831 kb on - strand, within BACOVA_02983 at 62.831 kb on - strand, within BACOVA_02983 at 62.831 kb on - strand, within BACOVA_02983 at 62.831 kb on - strand, within BACOVA_02983 at 62.831 kb on - strand, within BACOVA_02983 at 62.833 kb on - strand, within BACOVA_02983 at 62.935 kb on - strand, within BACOVA_02983 at 62.996 kb on - strand, within BACOVA_02983 at 63.004 kb on + strand, within BACOVA_02983 at 63.043 kb on + strand, within BACOVA_02983 at 63.055 kb on - strand, within BACOVA_02983 at 63.122 kb on - strand, within BACOVA_02983 at 63.127 kb on + strand, within BACOVA_02983 at 63.154 kb on + strand, within BACOVA_02983 at 63.155 kb on - strand, within BACOVA_02983 at 63.240 kb on + strand, within BACOVA_02983 at 63.255 kb on + strand, within BACOVA_02983 at 63.261 kb on - strand, within BACOVA_02983 at 63.323 kb on + strand, within BACOVA_02983 at 63.359 kb on + strand, within BACOVA_02983 at 63.370 kb on + strand, within BACOVA_02983 at 63.430 kb on - strand at 63.433 kb on + strand at 63.433 kb on + strand at 63.433 kb on + strand at 63.433 kb on + strand at 63.466 kb on + strand at 63.478 kb on - strand at 63.484 kb on + strand at 63.544 kb on + strand at 63.544 kb on + strand at 63.545 kb on - strand at 63.581 kb on + strand at 63.581 kb on + strand at 63.581 kb on + strand at 63.582 kb on - strand at 63.609 kb on + strand at 63.612 kb on - strand at 63.663 kb on + strand at 63.666 kb on - strand at 63.687 kb on - strand at 63.711 kb on + strand at 63.712 kb on - strand at 63.718 kb on + strand at 63.719 kb on - strand at 63.722 kb on - strand at 63.727 kb on + strand at 63.732 kb on + strand at 63.732 kb on + strand at 63.732 kb on + strand at 63.792 kb on - strand at 63.803 kb on + strand at 63.803 kb on + strand at 63.804 kb on - strand at 63.833 kb on - strand at 63.841 kb on - strand at 63.843 kb on - strand at 63.852 kb on + strand at 63.852 kb on + strand at 63.871 kb on + strand at 63.898 kb on + strand, within BACOVA_02984 at 63.908 kb on + strand, within BACOVA_02984 at 63.909 kb on - strand, within BACOVA_02984 at 63.929 kb on + strand, within BACOVA_02984 at 63.935 kb on - strand, within BACOVA_02984 at 63.935 kb on - strand, within BACOVA_02984 at 63.951 kb on - strand, within BACOVA_02984 at 63.958 kb on + strand, within BACOVA_02984 at 63.969 kb on - strand, within BACOVA_02984 at 63.969 kb on - strand, within BACOVA_02984 at 63.972 kb on + strand, within BACOVA_02984 at 63.975 kb on - strand, within BACOVA_02984 at 63.975 kb on - strand, within BACOVA_02984 at 64.010 kb on + strand, within BACOVA_02984 at 64.010 kb on + strand, within BACOVA_02984 at 64.011 kb on - strand, within BACOVA_02984 at 64.061 kb on + strand, within BACOVA_02984 at 64.064 kb on - strand, within BACOVA_02984 at 64.100 kb on + strand, within BACOVA_02984 at 64.101 kb on - strand, within BACOVA_02984 at 64.211 kb on + strand, within BACOVA_02984 at 64.212 kb on - strand, within BACOVA_02984 at 64.212 kb on - strand, within BACOVA_02984 at 64.261 kb on + strand, within BACOVA_02984 at 64.267 kb on + strand, within BACOVA_02984 at 64.267 kb on + strand, within BACOVA_02984 at 64.268 kb on - strand, within BACOVA_02984 at 64.268 kb on - strand, within BACOVA_02984 at 64.275 kb on - strand, within BACOVA_02984 at 64.275 kb on - strand, within BACOVA_02984 at 64.357 kb on + strand, within BACOVA_02984 at 64.358 kb on - strand, within BACOVA_02984 at 64.358 kb on - strand, within BACOVA_02984 at 64.363 kb on + strand, within BACOVA_02984 at 64.382 kb on + strand, within BACOVA_02984 at 64.396 kb on + strand, within BACOVA_02984 at 64.499 kb on + strand, within BACOVA_02984 at 64.502 kb on + strand, within BACOVA_02984 at 64.503 kb on - strand, within BACOVA_02984 at 64.503 kb on - strand, within BACOVA_02984 at 64.503 kb on - strand, within BACOVA_02984 at 64.514 kb on + strand, within BACOVA_02984 at 64.541 kb on + strand, within BACOVA_02984 at 64.562 kb on + strand, within BACOVA_02984 at 64.562 kb on + strand, within BACOVA_02984 at 64.563 kb on - strand, within BACOVA_02984 at 64.563 kb on - strand, within BACOVA_02984 at 64.567 kb on + strand, within BACOVA_02984 at 64.567 kb on + strand, within BACOVA_02984 at 64.568 kb on - strand, within BACOVA_02984 at 64.568 kb on - strand, within BACOVA_02984 at 64.589 kb on - strand, within BACOVA_02984 at 64.603 kb on + strand, within BACOVA_02984 at 64.625 kb on + strand, within BACOVA_02984 at 64.657 kb on + strand, within BACOVA_02984 at 64.664 kb on - strand, within BACOVA_02984 at 64.664 kb on - strand, within BACOVA_02984 at 64.714 kb on + strand, within BACOVA_02984 at 64.715 kb on - strand, within BACOVA_02984 at 64.724 kb on - strand, within BACOVA_02984 at 64.724 kb on - strand, within BACOVA_02984 at 64.731 kb on - strand, within BACOVA_02984 at 64.731 kb on - strand, within BACOVA_02984 at 64.731 kb on - strand, within BACOVA_02984 at 64.733 kb on + strand, within BACOVA_02984 at 64.733 kb on + strand, within BACOVA_02984 at 64.808 kb on + strand, within BACOVA_02984 at 64.824 kb on + strand, within BACOVA_02984 at 64.834 kb on + strand, within BACOVA_02984 at 64.925 kb on + strand, within BACOVA_02984 at 64.925 kb on + strand, within BACOVA_02984 at 64.937 kb on + strand at 64.937 kb on + strand at 64.959 kb on - strand at 64.973 kb on - strand at 64.983 kb on - strand at 64.983 kb on - strand at 65.006 kb on - strand at 65.006 kb on - strand at 65.020 kb on - strand at 65.040 kb on - strand at 65.050 kb on + strand at 65.116 kb on + strand at 65.123 kb on - strand at 65.172 kb on + strand at 65.187 kb on + strand, within BACOVA_02985 at 65.293 kb on + strand, within BACOVA_02985 at 65.294 kb on - strand, within BACOVA_02985 at 65.294 kb on - strand, within BACOVA_02985 at 65.296 kb on - strand, within BACOVA_02985 at 65.402 kb on + strand at 65.403 kb on - strand at 65.403 kb on - strand at 65.405 kb on + strand at 65.409 kb on + strand at 65.410 kb on - strand at 65.421 kb on + strand at 65.447 kb on - strand at 65.447 kb on - strand at 65.450 kb on + strand at 65.451 kb on - strand at 65.452 kb on + strand at 65.478 kb on - strand at 65.478 kb on - strand at 65.491 kb on - strand at 65.494 kb on + strand at 65.494 kb on + strand at 65.494 kb on + strand at 65.494 kb on + strand at 65.494 kb on + strand at 65.495 kb on - strand at 65.496 kb on + strand at 65.496 kb on + strand at 65.496 kb on + strand at 65.497 kb on - strand at 65.497 kb on - strand at 65.501 kb on + strand at 65.543 kb on + strand at 65.590 kb on + strand, within BACOVA_02986 at 65.592 kb on + strand, within BACOVA_02986 at 65.592 kb on + strand, within BACOVA_02986 at 65.593 kb on - strand, within BACOVA_02986 at 65.593 kb on - strand, within BACOVA_02986 at 65.593 kb on - strand, within BACOVA_02986 at 65.594 kb on + strand, within BACOVA_02986 at 65.594 kb on + strand, within BACOVA_02986 at 65.595 kb on - strand, within BACOVA_02986 at 65.595 kb on - strand, within BACOVA_02986 at 65.601 kb on - strand, within BACOVA_02986 at 65.602 kb on + strand, within BACOVA_02986 at 65.602 kb on + strand, within BACOVA_02986 at 65.603 kb on - strand, within BACOVA_02986 at 65.658 kb on - strand, within BACOVA_02986 at 65.835 kb on + strand, within BACOVA_02986 at 65.836 kb on - strand, within BACOVA_02986 at 65.846 kb on - strand, within BACOVA_02986 at 65.879 kb on + strand, within BACOVA_02986 at 65.880 kb on - strand, within BACOVA_02986 at 65.880 kb on - strand, within BACOVA_02986 at 65.923 kb on + strand, within BACOVA_02986 at 65.923 kb on + strand, within BACOVA_02986 at 65.925 kb on + strand, within BACOVA_02986 at 65.925 kb on + strand, within BACOVA_02986 at 65.926 kb on - strand, within BACOVA_02986 at 65.928 kb on + strand, within BACOVA_02986 at 65.928 kb on + strand, within BACOVA_02986 at 65.928 kb on + strand, within BACOVA_02986 at 65.933 kb on - strand, within BACOVA_02986 at 65.933 kb on - strand, within BACOVA_02986 at 65.937 kb on + strand, within BACOVA_02986 at 65.938 kb on - strand, within BACOVA_02986 at 65.994 kb on + strand, within BACOVA_02986 at 66.017 kb on + strand, within BACOVA_02986 at 66.022 kb on + strand, within BACOVA_02986 at 66.022 kb on + strand, within BACOVA_02986 at 66.023 kb on - strand, within BACOVA_02986 at 66.023 kb on - strand, within BACOVA_02986 at 66.025 kb on + strand, within BACOVA_02986 at 66.059 kb on + strand, within BACOVA_02986
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mM (C) remove 62,756 + BACOVA_02983 0.47 +1.4 62,756 + BACOVA_02983 0.47 +0.6 62,820 + BACOVA_02983 0.51 +0.8 62,830 + BACOVA_02983 0.52 +0.5 62,830 + BACOVA_02983 0.52 -0.3 62,830 + BACOVA_02983 0.52 +0.8 62,831 - BACOVA_02983 0.52 +0.4 62,831 - BACOVA_02983 0.52 -0.5 62,831 - BACOVA_02983 0.52 -0.1 62,831 - BACOVA_02983 0.52 -0.4 62,831 - BACOVA_02983 0.52 +0.7 62,833 - BACOVA_02983 0.52 -1.0 62,935 - BACOVA_02983 0.59 +0.4 62,996 - BACOVA_02983 0.63 -0.8 63,004 + BACOVA_02983 0.64 +1.6 63,043 + BACOVA_02983 0.66 -0.1 63,055 - BACOVA_02983 0.67 +0.3 63,122 - BACOVA_02983 0.72 -0.4 63,127 + BACOVA_02983 0.72 -0.8 63,154 + BACOVA_02983 0.74 -0.2 63,155 - BACOVA_02983 0.74 +0.0 63,240 + BACOVA_02983 0.80 +0.9 63,255 + BACOVA_02983 0.81 -0.4 63,261 - BACOVA_02983 0.81 -0.6 63,323 + BACOVA_02983 0.86 -0.7 63,359 + BACOVA_02983 0.88 +0.0 63,370 + BACOVA_02983 0.89 -0.4 63,430 - -0.1 63,433 + -1.3 63,433 + +1.3 63,433 + +0.4 63,433 + +0.5 63,466 + -0.2 63,478 - -0.3 63,484 + -0.5 63,544 + -0.3 63,544 + +0.9 63,545 - -1.6 63,581 + -0.4 63,581 + +0.3 63,581 + -1.2 63,582 - -0.4 63,609 + -0.6 63,612 - -0.1 63,663 + +0.6 63,666 - +0.6 63,687 - +0.6 63,711 + -0.5 63,712 - -0.0 63,718 + +0.2 63,719 - +0.2 63,722 - -1.0 63,727 + -0.2 63,732 + +0.4 63,732 + +0.5 63,732 + -0.6 63,792 - -1.0 63,803 + -0.3 63,803 + +0.2 63,804 - -0.4 63,833 - -0.3 63,841 - +0.6 63,843 - +0.4 63,852 + +0.8 63,852 + -0.2 63,871 + +0.0 63,898 + BACOVA_02984 0.11 -0.1 63,908 + BACOVA_02984 0.12 +0.0 63,909 - BACOVA_02984 0.12 +0.8 63,929 + BACOVA_02984 0.13 +0.3 63,935 - BACOVA_02984 0.14 +0.3 63,935 - BACOVA_02984 0.14 -1.4 63,951 - BACOVA_02984 0.15 -0.7 63,958 + BACOVA_02984 0.15 -0.2 63,969 - BACOVA_02984 0.16 +0.8 63,969 - BACOVA_02984 0.16 -1.2 63,972 + BACOVA_02984 0.17 -0.8 63,975 - BACOVA_02984 0.17 +0.9 63,975 - BACOVA_02984 0.17 +0.0 64,010 + BACOVA_02984 0.19 +0.2 64,010 + BACOVA_02984 0.19 -1.3 64,011 - BACOVA_02984 0.19 +0.2 64,061 + BACOVA_02984 0.23 -0.2 64,064 - BACOVA_02984 0.24 +0.1 64,100 + BACOVA_02984 0.26 +0.6 64,101 - BACOVA_02984 0.26 +0.7 64,211 + BACOVA_02984 0.35 +0.2 64,212 - BACOVA_02984 0.35 +0.6 64,212 - BACOVA_02984 0.35 -0.3 64,261 + BACOVA_02984 0.39 +1.6 64,267 + BACOVA_02984 0.39 +0.1 64,267 + BACOVA_02984 0.39 -0.4 64,268 - BACOVA_02984 0.39 +0.3 64,268 - BACOVA_02984 0.39 +0.6 64,275 - BACOVA_02984 0.40 +1.4 64,275 - BACOVA_02984 0.40 -0.6 64,357 + BACOVA_02984 0.46 -0.6 64,358 - BACOVA_02984 0.46 +0.3 64,358 - BACOVA_02984 0.46 +0.4 64,363 + BACOVA_02984 0.46 -0.6 64,382 + BACOVA_02984 0.48 +2.2 64,396 + BACOVA_02984 0.49 +0.4 64,499 + BACOVA_02984 0.57 +1.8 64,502 + BACOVA_02984 0.57 -0.3 64,503 - BACOVA_02984 0.57 +0.5 64,503 - BACOVA_02984 0.57 -0.2 64,503 - BACOVA_02984 0.57 -0.8 64,514 + BACOVA_02984 0.58 -0.9 64,541 + BACOVA_02984 0.60 +0.0 64,562 + BACOVA_02984 0.62 -0.2 64,562 + BACOVA_02984 0.62 -0.7 64,563 - BACOVA_02984 0.62 -1.1 64,563 - BACOVA_02984 0.62 -1.0 64,567 + BACOVA_02984 0.62 +0.6 64,567 + BACOVA_02984 0.62 -0.1 64,568 - BACOVA_02984 0.62 -0.3 64,568 - BACOVA_02984 0.62 +0.3 64,589 - BACOVA_02984 0.64 +0.4 64,603 + BACOVA_02984 0.65 +0.2 64,625 + BACOVA_02984 0.66 -1.2 64,657 + BACOVA_02984 0.69 +1.1 64,664 - BACOVA_02984 0.69 +0.4 64,664 - BACOVA_02984 0.69 -1.0 64,714 + BACOVA_02984 0.73 +0.9 64,715 - BACOVA_02984 0.73 -1.0 64,724 - BACOVA_02984 0.74 +1.1 64,724 - BACOVA_02984 0.74 -0.8 64,731 - BACOVA_02984 0.75 +1.2 64,731 - BACOVA_02984 0.75 -0.6 64,731 - BACOVA_02984 0.75 +0.0 64,733 + BACOVA_02984 0.75 -0.9 64,733 + BACOVA_02984 0.75 -0.1 64,808 + BACOVA_02984 0.80 +1.0 64,824 + BACOVA_02984 0.82 +0.2 64,834 + BACOVA_02984 0.82 +0.6 64,925 + BACOVA_02984 0.89 +0.2 64,925 + BACOVA_02984 0.89 -1.0 64,937 + +0.6 64,937 + -0.5 64,959 - -0.6 64,973 - +0.8 64,983 - +0.1 64,983 - +0.3 65,006 - -0.4 65,006 - -0.2 65,020 - +1.2 65,040 - -0.1 65,050 + -1.6 65,116 + -0.8 65,123 - -0.8 65,172 + -0.1 65,187 + BACOVA_02985 0.11 -0.5 65,293 + BACOVA_02985 0.67 -0.0 65,294 - BACOVA_02985 0.67 -0.6 65,294 - BACOVA_02985 0.67 -1.1 65,296 - BACOVA_02985 0.68 -0.7 65,402 + +0.5 65,403 - -0.4 65,403 - -0.1 65,405 + -0.7 65,409 + +1.6 65,410 - -0.4 65,421 + -0.7 65,447 - +0.7 65,447 - -1.0 65,450 + +1.6 65,451 - +0.1 65,452 + -0.7 65,478 - +1.3 65,478 - -0.2 65,491 - +0.7 65,494 + -0.5 65,494 + +0.3 65,494 + +2.4 65,494 + +0.0 65,494 + -0.6 65,495 - -2.7 65,496 + -0.2 65,496 + -0.2 65,496 + -0.0 65,497 - -0.9 65,497 - -0.7 65,501 + -4.0 65,543 + -0.7 65,590 + BACOVA_02986 0.11 +0.2 65,592 + BACOVA_02986 0.11 -0.6 65,592 + BACOVA_02986 0.11 -0.1 65,593 - BACOVA_02986 0.11 -0.6 65,593 - BACOVA_02986 0.11 +0.2 65,593 - BACOVA_02986 0.11 +0.7 65,594 + BACOVA_02986 0.11 -0.1 65,594 + BACOVA_02986 0.11 +0.2 65,595 - BACOVA_02986 0.11 -0.1 65,595 - BACOVA_02986 0.11 +0.4 65,601 - BACOVA_02986 0.12 +1.2 65,602 + BACOVA_02986 0.12 -0.0 65,602 + BACOVA_02986 0.12 -0.5 65,603 - BACOVA_02986 0.12 -1.0 65,658 - BACOVA_02986 0.16 +0.5 65,835 + BACOVA_02986 0.31 +0.6 65,836 - BACOVA_02986 0.31 +0.0 65,846 - BACOVA_02986 0.32 -0.2 65,879 + BACOVA_02986 0.35 +0.4 65,880 - BACOVA_02986 0.35 -0.2 65,880 - BACOVA_02986 0.35 -0.4 65,923 + BACOVA_02986 0.38 +0.7 65,923 + BACOVA_02986 0.38 +0.2 65,925 + BACOVA_02986 0.38 -0.4 65,925 + BACOVA_02986 0.38 -1.7 65,926 - BACOVA_02986 0.38 -0.2 65,928 + BACOVA_02986 0.39 +0.0 65,928 + BACOVA_02986 0.39 -0.0 65,928 + BACOVA_02986 0.39 -0.4 65,933 - BACOVA_02986 0.39 -0.4 65,933 - BACOVA_02986 0.39 +0.2 65,937 + BACOVA_02986 0.39 +0.8 65,938 - BACOVA_02986 0.39 +0.4 65,994 + BACOVA_02986 0.44 +0.1 66,017 + BACOVA_02986 0.46 +0.0 66,022 + BACOVA_02986 0.46 -1.1 66,022 + BACOVA_02986 0.46 +0.2 66,023 - BACOVA_02986 0.46 -0.0 66,023 - BACOVA_02986 0.46 -0.6 66,025 + BACOVA_02986 0.47 -1.0 66,059 + BACOVA_02986 0.49 +0.8
Or see this region's nucleotide sequence