Experiment: Beta-Lactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01054 and BACOVA_01055 overlap by 4 nucleotides BACOVA_01055 and BACOVA_01056 are separated by 53 nucleotides BACOVA_01056 and BACOVA_01057 are separated by 14 nucleotides
BACOVA_01054: BACOVA_01054 - hypothetical protein, at 261,662 to 262,873
_01054
BACOVA_01055: BACOVA_01055 - hypothetical protein, at 262,870 to 264,504
_01055
BACOVA_01056: BACOVA_01056 - hypothetical protein, at 264,558 to 264,764
_01056
BACOVA_01057: BACOVA_01057 - hypothetical protein, at 264,779 to 266,002
_01057
Position (kb) 262
263
264
265 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.888 kb on + strand, within BACOVA_01054 at 261.888 kb on + strand, within BACOVA_01054 at 261.889 kb on - strand, within BACOVA_01054 at 261.899 kb on + strand, within BACOVA_01054 at 261.899 kb on + strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.900 kb on - strand, within BACOVA_01054 at 261.923 kb on - strand, within BACOVA_01054 at 261.923 kb on - strand, within BACOVA_01054 at 261.945 kb on - strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.957 kb on + strand, within BACOVA_01054 at 261.958 kb on - strand, within BACOVA_01054 at 261.991 kb on - strand, within BACOVA_01054 at 261.991 kb on - strand, within BACOVA_01054 at 262.034 kb on - strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.035 kb on + strand, within BACOVA_01054 at 262.036 kb on - strand, within BACOVA_01054 at 262.085 kb on - strand, within BACOVA_01054 at 262.099 kb on + strand, within BACOVA_01054 at 262.105 kb on - strand, within BACOVA_01054 at 262.129 kb on + strand, within BACOVA_01054 at 262.134 kb on - strand, within BACOVA_01054 at 262.136 kb on + strand, within BACOVA_01054 at 262.136 kb on + strand, within BACOVA_01054 at 262.191 kb on - strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.225 kb on + strand, within BACOVA_01054 at 262.226 kb on - strand, within BACOVA_01054 at 262.234 kb on + strand, within BACOVA_01054 at 262.235 kb on - strand, within BACOVA_01054 at 262.239 kb on - strand, within BACOVA_01054 at 262.276 kb on + strand, within BACOVA_01054 at 262.352 kb on + strand, within BACOVA_01054 at 262.388 kb on + strand, within BACOVA_01054 at 262.395 kb on + strand, within BACOVA_01054 at 262.398 kb on + strand, within BACOVA_01054 at 262.415 kb on + strand, within BACOVA_01054 at 262.450 kb on + strand, within BACOVA_01054 at 262.451 kb on - strand, within BACOVA_01054 at 262.452 kb on + strand, within BACOVA_01054 at 262.534 kb on - strand, within BACOVA_01054 at 262.537 kb on - strand, within BACOVA_01054 at 262.537 kb on - strand, within BACOVA_01054 at 262.642 kb on - strand, within BACOVA_01054 at 262.657 kb on + strand, within BACOVA_01054 at 262.658 kb on - strand, within BACOVA_01054 at 262.663 kb on - strand, within BACOVA_01054 at 262.663 kb on - strand, within BACOVA_01054 at 262.679 kb on - strand, within BACOVA_01054 at 262.703 kb on + strand, within BACOVA_01054 at 262.705 kb on + strand, within BACOVA_01054 at 262.706 kb on - strand, within BACOVA_01054 at 262.743 kb on - strand, within BACOVA_01054 at 262.779 kb on + strand at 262.779 kb on + strand at 262.779 kb on + strand at 262.780 kb on - strand at 262.806 kb on + strand at 262.818 kb on - strand at 262.819 kb on + strand at 262.820 kb on - strand at 262.820 kb on - strand at 262.822 kb on + strand at 262.823 kb on - strand at 262.823 kb on - strand at 262.838 kb on - strand at 262.848 kb on + strand at 262.866 kb on + strand at 262.867 kb on - strand at 262.869 kb on + strand at 262.870 kb on - strand at 262.870 kb on - strand at 262.886 kb on + strand at 262.914 kb on - strand at 262.938 kb on - strand at 262.993 kb on + strand at 262.993 kb on + strand at 263.015 kb on + strand at 263.097 kb on + strand, within BACOVA_01055 at 263.098 kb on - strand, within BACOVA_01055 at 263.098 kb on - strand, within BACOVA_01055 at 263.100 kb on + strand, within BACOVA_01055 at 263.101 kb on - strand, within BACOVA_01055 at 263.121 kb on + strand, within BACOVA_01055 at 263.121 kb on + strand, within BACOVA_01055 at 263.122 kb on - strand, within BACOVA_01055 at 263.122 kb on - strand, within BACOVA_01055 at 263.192 kb on + strand, within BACOVA_01055 at 263.193 kb on - strand, within BACOVA_01055 at 263.193 kb on - strand, within BACOVA_01055 at 263.197 kb on - strand, within BACOVA_01055 at 263.204 kb on + strand, within BACOVA_01055 at 263.208 kb on + strand, within BACOVA_01055 at 263.209 kb on + strand, within BACOVA_01055 at 263.232 kb on - strand, within BACOVA_01055 at 263.246 kb on - strand, within BACOVA_01055 at 263.256 kb on + strand, within BACOVA_01055 at 263.295 kb on - strand, within BACOVA_01055 at 263.322 kb on - strand, within BACOVA_01055 at 263.330 kb on - strand, within BACOVA_01055 at 263.336 kb on + strand, within BACOVA_01055 at 263.336 kb on + strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.337 kb on - strand, within BACOVA_01055 at 263.343 kb on + strand, within BACOVA_01055 at 263.370 kb on + strand, within BACOVA_01055 at 263.371 kb on - strand, within BACOVA_01055 at 263.371 kb on - strand, within BACOVA_01055 at 263.380 kb on + strand, within BACOVA_01055 at 263.380 kb on + strand, within BACOVA_01055 at 263.381 kb on - strand, within BACOVA_01055 at 263.381 kb on - strand, within BACOVA_01055 at 263.393 kb on + strand, within BACOVA_01055 at 263.394 kb on - strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.414 kb on + strand, within BACOVA_01055 at 263.494 kb on + strand, within BACOVA_01055 at 263.495 kb on - strand, within BACOVA_01055 at 263.625 kb on - strand, within BACOVA_01055 at 263.639 kb on - strand, within BACOVA_01055 at 263.641 kb on - strand, within BACOVA_01055 at 263.641 kb on - strand, within BACOVA_01055 at 263.645 kb on - strand, within BACOVA_01055 at 263.666 kb on + strand, within BACOVA_01055 at 263.668 kb on + strand, within BACOVA_01055 at 263.668 kb on + strand, within BACOVA_01055 at 263.748 kb on + strand, within BACOVA_01055 at 263.748 kb on + strand, within BACOVA_01055 at 263.749 kb on - strand, within BACOVA_01055 at 263.749 kb on - strand, within BACOVA_01055 at 263.758 kb on + strand, within BACOVA_01055 at 263.759 kb on - strand, within BACOVA_01055 at 263.807 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.817 kb on + strand, within BACOVA_01055 at 263.818 kb on - strand, within BACOVA_01055 at 263.828 kb on - strand, within BACOVA_01055 at 263.886 kb on + strand, within BACOVA_01055 at 263.887 kb on - strand, within BACOVA_01055 at 263.892 kb on + strand, within BACOVA_01055 at 263.897 kb on + strand, within BACOVA_01055 at 263.898 kb on - strand, within BACOVA_01055 at 263.898 kb on - strand, within BACOVA_01055 at 263.898 kb on - strand, within BACOVA_01055 at 263.915 kb on + strand, within BACOVA_01055 at 263.915 kb on + strand, within BACOVA_01055 at 263.930 kb on + strand, within BACOVA_01055 at 263.931 kb on - strand, within BACOVA_01055 at 263.931 kb on - strand, within BACOVA_01055 at 263.931 kb on - strand, within BACOVA_01055 at 263.931 kb on - strand, within BACOVA_01055 at 263.941 kb on + strand, within BACOVA_01055 at 263.941 kb on + strand, within BACOVA_01055 at 263.942 kb on - strand, within BACOVA_01055 at 263.943 kb on + strand, within BACOVA_01055 at 263.943 kb on + strand, within BACOVA_01055 at 263.943 kb on + strand, within BACOVA_01055 at 263.944 kb on - strand, within BACOVA_01055 at 264.009 kb on + strand, within BACOVA_01055 at 264.018 kb on + strand, within BACOVA_01055 at 264.026 kb on + strand, within BACOVA_01055 at 264.026 kb on + strand, within BACOVA_01055 at 264.027 kb on - strand, within BACOVA_01055 at 264.027 kb on - strand, within BACOVA_01055 at 264.094 kb on - strand, within BACOVA_01055 at 264.223 kb on + strand, within BACOVA_01055 at 264.224 kb on - strand, within BACOVA_01055 at 264.312 kb on - strand, within BACOVA_01055 at 264.312 kb on - strand, within BACOVA_01055 at 264.312 kb on - strand, within BACOVA_01055 at 264.315 kb on - strand, within BACOVA_01055 at 264.315 kb on - strand, within BACOVA_01055 at 264.340 kb on + strand, within BACOVA_01055 at 264.367 kb on + strand at 264.399 kb on - strand at 264.407 kb on - strand at 264.407 kb on - strand at 264.420 kb on + strand at 264.421 kb on - strand at 264.433 kb on - strand at 264.433 kb on - strand at 264.455 kb on + strand at 264.456 kb on - strand at 264.456 kb on - strand at 264.483 kb on + strand at 264.483 kb on - strand at 264.483 kb on - strand at 264.507 kb on + strand at 264.507 kb on + strand at 264.507 kb on + strand at 264.508 kb on - strand at 264.511 kb on + strand at 264.512 kb on - strand at 264.512 kb on - strand at 264.512 kb on - strand at 264.515 kb on + strand at 264.567 kb on - strand at 264.574 kb on + strand at 264.574 kb on + strand at 264.577 kb on - strand at 264.578 kb on + strand at 264.578 kb on + strand at 264.587 kb on - strand, within BACOVA_01056 at 264.612 kb on - strand, within BACOVA_01056 at 264.686 kb on + strand, within BACOVA_01056 at 264.695 kb on + strand, within BACOVA_01056 at 264.696 kb on - strand, within BACOVA_01056 at 264.746 kb on + strand at 264.746 kb on + strand at 264.746 kb on + strand at 264.746 kb on + strand at 264.767 kb on + strand at 264.768 kb on - strand at 264.772 kb on + strand at 264.772 kb on + strand at 264.775 kb on - strand at 264.777 kb on - strand at 264.781 kb on - strand at 264.800 kb on - strand at 264.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mM (C) remove 261,888 + BACOVA_01054 0.19 +0.7 261,888 + BACOVA_01054 0.19 +0.2 261,889 - BACOVA_01054 0.19 +0.4 261,899 + BACOVA_01054 0.20 +0.8 261,899 + BACOVA_01054 0.20 -0.2 261,900 - BACOVA_01054 0.20 +0.1 261,900 - BACOVA_01054 0.20 -0.6 261,900 - BACOVA_01054 0.20 -0.5 261,923 - BACOVA_01054 0.22 +0.2 261,923 - BACOVA_01054 0.22 -0.5 261,945 - BACOVA_01054 0.23 +0.2 261,957 + BACOVA_01054 0.24 -0.3 261,957 + BACOVA_01054 0.24 +0.3 261,957 + BACOVA_01054 0.24 +0.0 261,958 - BACOVA_01054 0.24 -0.8 261,991 - BACOVA_01054 0.27 -0.2 261,991 - BACOVA_01054 0.27 -0.5 262,034 - BACOVA_01054 0.31 -0.4 262,035 + BACOVA_01054 0.31 +0.2 262,035 + BACOVA_01054 0.31 +0.3 262,035 + BACOVA_01054 0.31 +0.3 262,035 + BACOVA_01054 0.31 -0.3 262,036 - BACOVA_01054 0.31 +0.1 262,085 - BACOVA_01054 0.35 +0.1 262,099 + BACOVA_01054 0.36 +0.8 262,105 - BACOVA_01054 0.37 -0.8 262,129 + BACOVA_01054 0.39 +0.6 262,134 - BACOVA_01054 0.39 -0.3 262,136 + BACOVA_01054 0.39 +0.6 262,136 + BACOVA_01054 0.39 +0.0 262,191 - BACOVA_01054 0.44 -0.8 262,225 + BACOVA_01054 0.46 +0.1 262,225 + BACOVA_01054 0.46 -0.4 262,225 + BACOVA_01054 0.46 -0.7 262,225 + BACOVA_01054 0.46 -1.5 262,226 - BACOVA_01054 0.47 +1.0 262,234 + BACOVA_01054 0.47 -0.7 262,235 - BACOVA_01054 0.47 -0.6 262,239 - BACOVA_01054 0.48 +0.1 262,276 + BACOVA_01054 0.51 +0.1 262,352 + BACOVA_01054 0.57 +0.3 262,388 + BACOVA_01054 0.60 -0.2 262,395 + BACOVA_01054 0.60 +0.5 262,398 + BACOVA_01054 0.61 -1.7 262,415 + BACOVA_01054 0.62 +1.7 262,450 + BACOVA_01054 0.65 -1.0 262,451 - BACOVA_01054 0.65 -0.9 262,452 + BACOVA_01054 0.65 -0.8 262,534 - BACOVA_01054 0.72 +0.0 262,537 - BACOVA_01054 0.72 -1.5 262,537 - BACOVA_01054 0.72 -1.0 262,642 - BACOVA_01054 0.81 -0.9 262,657 + BACOVA_01054 0.82 +0.6 262,658 - BACOVA_01054 0.82 -0.8 262,663 - BACOVA_01054 0.83 -0.0 262,663 - BACOVA_01054 0.83 -0.0 262,679 - BACOVA_01054 0.84 -0.5 262,703 + BACOVA_01054 0.86 +0.0 262,705 + BACOVA_01054 0.86 -0.1 262,706 - BACOVA_01054 0.86 -0.5 262,743 - BACOVA_01054 0.89 -0.3 262,779 + -0.1 262,779 + -0.1 262,779 + +0.2 262,780 - -0.3 262,806 + +0.3 262,818 - +0.5 262,819 + -0.0 262,820 - -0.2 262,820 - -0.8 262,822 + -0.3 262,823 - -1.0 262,823 - +0.6 262,838 - -0.2 262,848 + -0.5 262,866 + -0.7 262,867 - +0.3 262,869 + -0.1 262,870 - -0.2 262,870 - -0.4 262,886 + +0.8 262,914 - +0.1 262,938 - -0.8 262,993 + +1.1 262,993 + +0.6 263,015 + -0.4 263,097 + BACOVA_01055 0.14 +1.8 263,098 - BACOVA_01055 0.14 -0.4 263,098 - BACOVA_01055 0.14 +0.3 263,100 + BACOVA_01055 0.14 +0.2 263,101 - BACOVA_01055 0.14 -0.3 263,121 + BACOVA_01055 0.15 -0.7 263,121 + BACOVA_01055 0.15 -1.4 263,122 - BACOVA_01055 0.15 +0.1 263,122 - BACOVA_01055 0.15 -1.0 263,192 + BACOVA_01055 0.20 +1.1 263,193 - BACOVA_01055 0.20 +0.6 263,193 - BACOVA_01055 0.20 +1.2 263,197 - BACOVA_01055 0.20 +0.7 263,204 + BACOVA_01055 0.20 +1.6 263,208 + BACOVA_01055 0.21 +0.1 263,209 + BACOVA_01055 0.21 -1.1 263,232 - BACOVA_01055 0.22 -1.1 263,246 - BACOVA_01055 0.23 +0.6 263,256 + BACOVA_01055 0.24 -0.4 263,295 - BACOVA_01055 0.26 +0.2 263,322 - BACOVA_01055 0.28 +0.4 263,330 - BACOVA_01055 0.28 +0.8 263,336 + BACOVA_01055 0.29 -0.4 263,336 + BACOVA_01055 0.29 -0.5 263,337 - BACOVA_01055 0.29 -0.2 263,337 - BACOVA_01055 0.29 +0.0 263,337 - BACOVA_01055 0.29 -0.7 263,343 + BACOVA_01055 0.29 -0.2 263,370 + BACOVA_01055 0.31 +0.2 263,371 - BACOVA_01055 0.31 -0.0 263,371 - BACOVA_01055 0.31 -0.6 263,380 + BACOVA_01055 0.31 -0.4 263,380 + BACOVA_01055 0.31 +1.2 263,381 - BACOVA_01055 0.31 +0.2 263,381 - BACOVA_01055 0.31 +0.2 263,393 + BACOVA_01055 0.32 +1.1 263,394 - BACOVA_01055 0.32 -0.2 263,414 + BACOVA_01055 0.33 +0.3 263,414 + BACOVA_01055 0.33 +0.2 263,414 + BACOVA_01055 0.33 +0.3 263,414 + BACOVA_01055 0.33 -0.1 263,494 + BACOVA_01055 0.38 +0.3 263,495 - BACOVA_01055 0.38 -0.2 263,625 - BACOVA_01055 0.46 +0.2 263,639 - BACOVA_01055 0.47 +1.5 263,641 - BACOVA_01055 0.47 +0.1 263,641 - BACOVA_01055 0.47 +0.9 263,645 - BACOVA_01055 0.47 +0.1 263,666 + BACOVA_01055 0.49 -0.2 263,668 + BACOVA_01055 0.49 +0.0 263,668 + BACOVA_01055 0.49 +0.3 263,748 + BACOVA_01055 0.54 +0.3 263,748 + BACOVA_01055 0.54 +0.4 263,749 - BACOVA_01055 0.54 +1.0 263,749 - BACOVA_01055 0.54 +0.3 263,758 + BACOVA_01055 0.54 -0.4 263,759 - BACOVA_01055 0.54 +1.4 263,807 + BACOVA_01055 0.57 +0.2 263,817 + BACOVA_01055 0.58 +0.3 263,817 + BACOVA_01055 0.58 -0.4 263,817 + BACOVA_01055 0.58 +0.5 263,818 - BACOVA_01055 0.58 +0.8 263,828 - BACOVA_01055 0.59 +0.2 263,886 + BACOVA_01055 0.62 +0.8 263,887 - BACOVA_01055 0.62 -0.7 263,892 + BACOVA_01055 0.63 -0.4 263,897 + BACOVA_01055 0.63 -0.1 263,898 - BACOVA_01055 0.63 -0.6 263,898 - BACOVA_01055 0.63 +0.1 263,898 - BACOVA_01055 0.63 -0.5 263,915 + BACOVA_01055 0.64 -0.6 263,915 + BACOVA_01055 0.64 +0.5 263,930 + BACOVA_01055 0.65 +1.2 263,931 - BACOVA_01055 0.65 -0.2 263,931 - BACOVA_01055 0.65 -0.2 263,931 - BACOVA_01055 0.65 -0.6 263,931 - BACOVA_01055 0.65 -0.3 263,941 + BACOVA_01055 0.66 +0.2 263,941 + BACOVA_01055 0.66 -1.2 263,942 - BACOVA_01055 0.66 -1.2 263,943 + BACOVA_01055 0.66 +0.2 263,943 + BACOVA_01055 0.66 -0.6 263,943 + BACOVA_01055 0.66 +0.2 263,944 - BACOVA_01055 0.66 -0.3 264,009 + BACOVA_01055 0.70 +0.6 264,018 + BACOVA_01055 0.70 +0.2 264,026 + BACOVA_01055 0.71 +0.3 264,026 + BACOVA_01055 0.71 +0.2 264,027 - BACOVA_01055 0.71 -0.3 264,027 - BACOVA_01055 0.71 -0.3 264,094 - BACOVA_01055 0.75 -0.5 264,223 + BACOVA_01055 0.83 -1.5 264,224 - BACOVA_01055 0.83 +0.4 264,312 - BACOVA_01055 0.88 -1.2 264,312 - BACOVA_01055 0.88 +0.3 264,312 - BACOVA_01055 0.88 -1.8 264,315 - BACOVA_01055 0.88 -0.1 264,315 - BACOVA_01055 0.88 -1.4 264,340 + BACOVA_01055 0.90 -0.2 264,367 + +0.1 264,399 - -0.6 264,407 - -1.2 264,407 - -0.9 264,420 + -1.4 264,421 - -0.5 264,433 - -0.7 264,433 - +1.5 264,455 + -0.1 264,456 - -0.8 264,456 - +1.3 264,483 + +1.0 264,483 - -0.7 264,483 - -0.1 264,507 + -0.1 264,507 + +0.4 264,507 + -0.3 264,508 - +0.2 264,511 + +0.8 264,512 - +0.1 264,512 - +1.4 264,512 - +2.0 264,515 + -0.9 264,567 - -0.4 264,574 + -0.4 264,574 + -1.2 264,577 - +0.1 264,578 + +0.8 264,578 + -0.2 264,587 - BACOVA_01056 0.14 +0.2 264,612 - BACOVA_01056 0.26 +0.2 264,686 + BACOVA_01056 0.62 +0.4 264,695 + BACOVA_01056 0.66 -0.8 264,696 - BACOVA_01056 0.67 +0.6 264,746 + -0.5 264,746 + -0.8 264,746 + -1.5 264,746 + -0.9 264,767 + -0.3 264,768 - +0.0 264,772 + -1.2 264,772 + -0.2 264,775 - -0.0 264,777 - -0.8 264,781 - -1.7 264,800 - -0.8 264,800 - +1.2
Or see this region's nucleotide sequence