Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01729

Experiment: Sucrose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01727 and BACOVA_01728 are separated by 220 nucleotidesBACOVA_01728 and BACOVA_01729 are separated by 133 nucleotidesBACOVA_01729 and BACOVA_01730 are separated by 29 nucleotidesBACOVA_01730 and BACOVA_01731 are separated by 151 nucleotidesBACOVA_01731 and BACOVA_01732 overlap by 4 nucleotides BACOVA_01727: BACOVA_01727 - putative DNA-binding protein, at 152,458 to 152,946 _01727 BACOVA_01728: BACOVA_01728 - hypothetical protein, at 153,167 to 153,385 _01728 BACOVA_01729: BACOVA_01729 - hypothetical protein, at 153,519 to 155,351 _01729 BACOVA_01730: BACOVA_01730 - VirE N-terminal domain protein, at 155,381 to 156,010 _01730 BACOVA_01731: BACOVA_01731 - hypothetical protein, at 156,162 to 156,311 _01731 BACOVA_01732: BACOVA_01732 - hypothetical protein, at 156,308 to 156,427 _01732 Position (kb) 153 154 155 156Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 152.637 kb on + strand, within BACOVA_01727at 152.770 kb on + strand, within BACOVA_01727at 153.184 kb on - strandat 153.191 kb on + strand, within BACOVA_01728at 153.309 kb on + strand, within BACOVA_01728at 153.309 kb on + strand, within BACOVA_01728at 153.309 kb on + strand, within BACOVA_01728at 153.363 kb on + strand, within BACOVA_01728at 153.363 kb on + strand, within BACOVA_01728at 153.383 kb on + strandat 153.412 kb on + strandat 153.428 kb on - strandat 153.443 kb on + strandat 153.443 kb on + strandat 153.457 kb on - strandat 153.486 kb on - strandat 153.486 kb on - strandat 153.569 kb on - strandat 153.608 kb on + strandat 153.608 kb on + strandat 153.751 kb on - strand, within BACOVA_01729at 153.755 kb on + strand, within BACOVA_01729at 153.945 kb on + strand, within BACOVA_01729at 153.946 kb on - strand, within BACOVA_01729at 153.946 kb on - strand, within BACOVA_01729at 153.968 kb on + strand, within BACOVA_01729at 153.977 kb on + strand, within BACOVA_01729at 154.152 kb on + strand, within BACOVA_01729at 154.152 kb on + strand, within BACOVA_01729at 154.152 kb on + strand, within BACOVA_01729at 154.152 kb on + strand, within BACOVA_01729at 154.153 kb on - strand, within BACOVA_01729at 154.153 kb on - strand, within BACOVA_01729at 154.153 kb on - strand, within BACOVA_01729at 154.215 kb on + strand, within BACOVA_01729at 154.216 kb on - strand, within BACOVA_01729at 154.216 kb on - strand, within BACOVA_01729at 154.216 kb on - strand, within BACOVA_01729at 154.226 kb on + strand, within BACOVA_01729at 154.227 kb on - strand, within BACOVA_01729at 154.227 kb on - strand, within BACOVA_01729at 154.227 kb on - strand, within BACOVA_01729at 154.232 kb on - strand, within BACOVA_01729at 154.469 kb on + strand, within BACOVA_01729at 154.469 kb on + strand, within BACOVA_01729at 154.470 kb on - strand, within BACOVA_01729at 154.497 kb on - strand, within BACOVA_01729at 154.524 kb on - strand, within BACOVA_01729at 154.599 kb on - strand, within BACOVA_01729at 154.599 kb on - strand, within BACOVA_01729at 154.599 kb on - strand, within BACOVA_01729at 154.728 kb on + strand, within BACOVA_01729at 154.728 kb on + strand, within BACOVA_01729at 154.806 kb on + strand, within BACOVA_01729at 154.807 kb on - strand, within BACOVA_01729at 154.986 kb on - strand, within BACOVA_01729at 154.986 kb on - strand, within BACOVA_01729at 154.987 kb on + strand, within BACOVA_01729at 154.987 kb on + strand, within BACOVA_01729at 154.989 kb on + strand, within BACOVA_01729at 154.990 kb on - strand, within BACOVA_01729at 155.079 kb on + strand, within BACOVA_01729at 155.080 kb on - strand, within BACOVA_01729at 155.142 kb on - strand, within BACOVA_01729at 155.183 kb on - strandat 155.266 kb on - strandat 155.270 kb on - strandat 155.279 kb on - strandat 155.331 kb on + strandat 155.364 kb on + strandat 155.371 kb on + strandat 155.378 kb on + strandat 155.460 kb on - strand, within BACOVA_01730at 155.506 kb on - strand, within BACOVA_01730at 155.521 kb on - strand, within BACOVA_01730at 155.540 kb on - strand, within BACOVA_01730at 155.586 kb on + strand, within BACOVA_01730at 155.636 kb on + strand, within BACOVA_01730at 155.681 kb on + strand, within BACOVA_01730at 155.695 kb on - strand, within BACOVA_01730at 155.695 kb on - strand, within BACOVA_01730at 155.717 kb on - strand, within BACOVA_01730at 155.791 kb on - strand, within BACOVA_01730at 155.791 kb on - strand, within BACOVA_01730at 155.791 kb on - strand, within BACOVA_01730at 155.820 kb on - strand, within BACOVA_01730at 155.920 kb on + strand, within BACOVA_01730at 155.936 kb on - strand, within BACOVA_01730at 155.985 kb on + strandat 155.986 kb on - strandat 156.011 kb on - strandat 156.021 kb on - strandat 156.021 kb on - strandat 156.095 kb on + strandat 156.222 kb on - strand, within BACOVA_01731at 156.229 kb on + strand, within BACOVA_01731at 156.242 kb on + strand, within BACOVA_01731at 156.242 kb on + strand, within BACOVA_01731at 156.248 kb on + strand, within BACOVA_01731at 156.257 kb on - strand, within BACOVA_01731at 156.260 kb on + strand, within BACOVA_01731at 156.260 kb on + strand, within BACOVA_01731at 156.261 kb on - strand, within BACOVA_01731at 156.261 kb on - strand, within BACOVA_01731at 156.276 kb on + strand, within BACOVA_01731at 156.320 kb on - strand, within BACOVA_01732

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mM (C)
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152,637 + BACOVA_01727 0.37 -0.5
152,770 + BACOVA_01727 0.64 -0.7
153,184 - -0.5
153,191 + BACOVA_01728 0.11 +0.0
153,309 + BACOVA_01728 0.65 +0.1
153,309 + BACOVA_01728 0.65 +0.2
153,309 + BACOVA_01728 0.65 -0.3
153,363 + BACOVA_01728 0.89 +0.2
153,363 + BACOVA_01728 0.89 +1.0
153,383 + +0.5
153,412 + -0.1
153,428 - +1.6
153,443 + -0.3
153,443 + +0.1
153,457 - -0.8
153,486 - +0.3
153,486 - -0.2
153,569 - +0.3
153,608 + +0.3
153,608 + -0.4
153,751 - BACOVA_01729 0.13 +0.1
153,755 + BACOVA_01729 0.13 -0.0
153,945 + BACOVA_01729 0.23 +1.1
153,946 - BACOVA_01729 0.23 +0.3
153,946 - BACOVA_01729 0.23 -0.8
153,968 + BACOVA_01729 0.24 +0.2
153,977 + BACOVA_01729 0.25 -1.4
154,152 + BACOVA_01729 0.35 -0.1
154,152 + BACOVA_01729 0.35 +1.2
154,152 + BACOVA_01729 0.35 +0.6
154,152 + BACOVA_01729 0.35 +0.3
154,153 - BACOVA_01729 0.35 +0.2
154,153 - BACOVA_01729 0.35 -0.6
154,153 - BACOVA_01729 0.35 +1.2
154,215 + BACOVA_01729 0.38 +1.1
154,216 - BACOVA_01729 0.38 +0.7
154,216 - BACOVA_01729 0.38 -0.1
154,216 - BACOVA_01729 0.38 +0.2
154,226 + BACOVA_01729 0.39 +1.3
154,227 - BACOVA_01729 0.39 -0.1
154,227 - BACOVA_01729 0.39 -0.4
154,227 - BACOVA_01729 0.39 +0.7
154,232 - BACOVA_01729 0.39 +2.6
154,469 + BACOVA_01729 0.52 +0.2
154,469 + BACOVA_01729 0.52 +0.3
154,470 - BACOVA_01729 0.52 +1.1
154,497 - BACOVA_01729 0.53 +0.0
154,524 - BACOVA_01729 0.55 -2.0
154,599 - BACOVA_01729 0.59 -0.1
154,599 - BACOVA_01729 0.59 +0.5
154,599 - BACOVA_01729 0.59 -0.1
154,728 + BACOVA_01729 0.66 +0.2
154,728 + BACOVA_01729 0.66 +0.7
154,806 + BACOVA_01729 0.70 -0.4
154,807 - BACOVA_01729 0.70 +1.4
154,986 - BACOVA_01729 0.80 -0.4
154,986 - BACOVA_01729 0.80 -0.8
154,987 + BACOVA_01729 0.80 +1.4
154,987 + BACOVA_01729 0.80 -0.8
154,989 + BACOVA_01729 0.80 -0.8
154,990 - BACOVA_01729 0.80 +0.1
155,079 + BACOVA_01729 0.85 -0.6
155,080 - BACOVA_01729 0.85 -3.1
155,142 - BACOVA_01729 0.89 -1.0
155,183 - +0.4
155,266 - +1.6
155,270 - -0.4
155,279 - -0.5
155,331 + +1.2
155,364 + +1.0
155,371 + -0.8
155,378 + -0.7
155,460 - BACOVA_01730 0.13 -0.7
155,506 - BACOVA_01730 0.20 -0.3
155,521 - BACOVA_01730 0.22 -1.6
155,540 - BACOVA_01730 0.25 -0.8
155,586 + BACOVA_01730 0.33 +1.5
155,636 + BACOVA_01730 0.40 +0.6
155,681 + BACOVA_01730 0.48 -0.3
155,695 - BACOVA_01730 0.50 -0.8
155,695 - BACOVA_01730 0.50 +1.1
155,717 - BACOVA_01730 0.53 +0.3
155,791 - BACOVA_01730 0.65 +0.7
155,791 - BACOVA_01730 0.65 +1.3
155,791 - BACOVA_01730 0.65 +1.2
155,820 - BACOVA_01730 0.70 -0.3
155,920 + BACOVA_01730 0.86 +0.2
155,936 - BACOVA_01730 0.88 +0.3
155,985 + -0.8
155,986 - +0.2
156,011 - -0.6
156,021 - +0.7
156,021 - -1.3
156,095 + +1.6
156,222 - BACOVA_01731 0.40 +1.0
156,229 + BACOVA_01731 0.45 -0.8
156,242 + BACOVA_01731 0.53 -0.8
156,242 + BACOVA_01731 0.53 +0.6
156,248 + BACOVA_01731 0.57 -1.4
156,257 - BACOVA_01731 0.63 -0.8
156,260 + BACOVA_01731 0.65 +0.2
156,260 + BACOVA_01731 0.65 +0.7
156,261 - BACOVA_01731 0.66 +0.7
156,261 - BACOVA_01731 0.66 -0.1
156,276 + BACOVA_01731 0.76 -0.3
156,320 - BACOVA_01732 0.10 -1.2

Or see this region's nucleotide sequence