Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01340 and BACOVA_01341 are separated by 35 nucleotides BACOVA_01341 and BACOVA_01342 overlap by 4 nucleotides BACOVA_01342 and BACOVA_01343 are separated by 73 nucleotides BACOVA_01343 and BACOVA_01344 are separated by 37 nucleotides
BACOVA_01340: BACOVA_01340 - DNA-binding helix-turn-helix protein, at 4,110 to 4,460
_01340
BACOVA_01341: BACOVA_01341 - hypothetical protein, at 4,496 to 4,828
_01341
BACOVA_01342: BACOVA_01342 - hypothetical protein, at 4,825 to 5,463
_01342
BACOVA_01343: BACOVA_01343 - ABC transporter, ATP-binding protein, at 5,537 to 6,310
_01343
BACOVA_01344: BACOVA_01344 - ABC transporter, substrate-binding protein, at 6,348 to 7,271
_01344
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1 at 3.825 kb on - strand at 3.907 kb on - strand at 3.927 kb on + strand at 3.958 kb on + strand at 3.961 kb on + strand at 3.962 kb on - strand at 4.022 kb on + strand at 4.025 kb on + strand at 4.025 kb on + strand at 4.026 kb on - strand at 4.042 kb on - strand at 4.098 kb on - strand at 4.098 kb on - strand at 4.098 kb on - strand at 4.140 kb on + strand at 4.164 kb on - strand, within BACOVA_01340 at 4.184 kb on + strand, within BACOVA_01340 at 4.192 kb on + strand, within BACOVA_01340 at 4.197 kb on - strand, within BACOVA_01340 at 4.235 kb on + strand, within BACOVA_01340 at 4.236 kb on - strand, within BACOVA_01340 at 4.238 kb on + strand, within BACOVA_01340 at 4.238 kb on + strand, within BACOVA_01340 at 4.241 kb on + strand, within BACOVA_01340 at 4.262 kb on + strand, within BACOVA_01340 at 4.326 kb on - strand, within BACOVA_01340 at 4.348 kb on + strand, within BACOVA_01340 at 4.349 kb on - strand, within BACOVA_01340 at 4.365 kb on - strand, within BACOVA_01340 at 4.367 kb on - strand, within BACOVA_01340 at 4.379 kb on + strand, within BACOVA_01340 at 4.379 kb on + strand, within BACOVA_01340 at 4.379 kb on + strand, within BACOVA_01340 at 4.384 kb on + strand, within BACOVA_01340 at 4.384 kb on + strand, within BACOVA_01340 at 4.385 kb on - strand, within BACOVA_01340 at 4.462 kb on + strand at 4.462 kb on + strand at 4.480 kb on + strand at 4.484 kb on - strand at 4.490 kb on + strand at 4.495 kb on + strand at 4.495 kb on + strand at 4.495 kb on + strand at 4.496 kb on - strand at 4.496 kb on - strand at 4.496 kb on - strand at 4.496 kb on - strand at 4.496 kb on - strand at 4.752 kb on - strand, within BACOVA_01341 at 4.798 kb on + strand at 4.818 kb on + strand at 4.818 kb on + strand at 4.819 kb on - strand at 4.824 kb on + strand at 4.825 kb on - strand at 4.895 kb on - strand, within BACOVA_01342 at 4.963 kb on - strand, within BACOVA_01342 at 4.985 kb on + strand, within BACOVA_01342 at 5.069 kb on + strand, within BACOVA_01342 at 5.069 kb on + strand, within BACOVA_01342 at 5.070 kb on - strand, within BACOVA_01342 at 5.083 kb on + strand, within BACOVA_01342 at 5.084 kb on - strand, within BACOVA_01342 at 5.084 kb on - strand, within BACOVA_01342 at 5.114 kb on - strand, within BACOVA_01342 at 5.128 kb on + strand, within BACOVA_01342 at 5.223 kb on + strand, within BACOVA_01342 at 5.242 kb on + strand, within BACOVA_01342 at 5.243 kb on - strand, within BACOVA_01342 at 5.246 kb on - strand, within BACOVA_01342 at 5.265 kb on - strand, within BACOVA_01342 at 5.306 kb on + strand, within BACOVA_01342 at 5.306 kb on + strand, within BACOVA_01342 at 5.307 kb on - strand, within BACOVA_01342 at 5.355 kb on + strand, within BACOVA_01342 at 5.355 kb on + strand, within BACOVA_01342 at 5.358 kb on + strand, within BACOVA_01342 at 5.361 kb on + strand, within BACOVA_01342 at 5.410 kb on + strand at 5.411 kb on - strand at 5.411 kb on - strand at 5.432 kb on + strand at 5.440 kb on + strand at 5.440 kb on + strand at 5.441 kb on - strand at 5.441 kb on - strand at 5.441 kb on - strand at 5.445 kb on - strand at 5.445 kb on - strand at 5.505 kb on - strand at 5.505 kb on - strand at 5.515 kb on - strand at 5.532 kb on + strand at 5.533 kb on - strand at 5.538 kb on + strand at 5.539 kb on - strand at 5.581 kb on + strand at 5.581 kb on + strand at 5.658 kb on + strand, within BACOVA_01343 at 5.658 kb on + strand, within BACOVA_01343 at 5.659 kb on - strand, within BACOVA_01343 at 5.694 kb on - strand, within BACOVA_01343 at 5.694 kb on - strand, within BACOVA_01343 at 5.706 kb on - strand, within BACOVA_01343 at 5.802 kb on + strand, within BACOVA_01343 at 5.802 kb on + strand, within BACOVA_01343 at 5.803 kb on - strand, within BACOVA_01343 at 5.849 kb on - strand, within BACOVA_01343 at 5.996 kb on + strand, within BACOVA_01343 at 5.996 kb on + strand, within BACOVA_01343 at 6.002 kb on + strand, within BACOVA_01343 at 6.003 kb on - strand, within BACOVA_01343 at 6.003 kb on - strand, within BACOVA_01343 at 6.050 kb on + strand, within BACOVA_01343 at 6.052 kb on + strand, within BACOVA_01343 at 6.060 kb on + strand, within BACOVA_01343 at 6.072 kb on + strand, within BACOVA_01343 at 6.073 kb on - strand, within BACOVA_01343 at 6.097 kb on + strand, within BACOVA_01343 at 6.119 kb on - strand, within BACOVA_01343 at 6.127 kb on + strand, within BACOVA_01343 at 6.128 kb on - strand, within BACOVA_01343 at 6.172 kb on + strand, within BACOVA_01343 at 6.172 kb on + strand, within BACOVA_01343 at 6.172 kb on - strand, within BACOVA_01343 at 6.173 kb on - strand, within BACOVA_01343 at 6.203 kb on + strand, within BACOVA_01343 at 6.204 kb on - strand, within BACOVA_01343 at 6.204 kb on - strand, within BACOVA_01343 at 6.204 kb on - strand, within BACOVA_01343 at 6.205 kb on + strand, within BACOVA_01343 at 6.205 kb on + strand, within BACOVA_01343 at 6.208 kb on + strand, within BACOVA_01343 at 6.209 kb on - strand, within BACOVA_01343 at 6.209 kb on - strand, within BACOVA_01343 at 6.228 kb on + strand, within BACOVA_01343 at 6.228 kb on + strand, within BACOVA_01343 at 6.229 kb on - strand, within BACOVA_01343 at 6.229 kb on - strand, within BACOVA_01343 at 6.236 kb on + strand at 6.236 kb on + strand at 6.236 kb on + strand at 6.237 kb on - strand at 6.343 kb on + strand at 6.350 kb on - strand at 6.412 kb on + strand at 6.412 kb on + strand at 6.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 3,825 - +0.2 3,907 - -0.1 3,927 + -0.0 3,958 + -0.2 3,961 + +0.3 3,962 - +0.1 4,022 + -0.7 4,025 + -0.6 4,025 + -0.2 4,026 - +0.3 4,042 - +0.3 4,098 - -0.5 4,098 - +0.9 4,098 - +0.6 4,140 + -0.3 4,164 - BACOVA_01340 0.15 +0.1 4,184 + BACOVA_01340 0.21 +0.7 4,192 + BACOVA_01340 0.23 +0.1 4,197 - BACOVA_01340 0.25 -0.4 4,235 + BACOVA_01340 0.36 -0.3 4,236 - BACOVA_01340 0.36 +0.8 4,238 + BACOVA_01340 0.36 -0.1 4,238 + BACOVA_01340 0.36 -0.1 4,241 + BACOVA_01340 0.37 +0.3 4,262 + BACOVA_01340 0.43 -0.8 4,326 - BACOVA_01340 0.62 -0.1 4,348 + BACOVA_01340 0.68 +0.8 4,349 - BACOVA_01340 0.68 -0.7 4,365 - BACOVA_01340 0.73 -0.2 4,367 - BACOVA_01340 0.73 -0.3 4,379 + BACOVA_01340 0.77 +0.2 4,379 + BACOVA_01340 0.77 +1.1 4,379 + BACOVA_01340 0.77 -0.2 4,384 + BACOVA_01340 0.78 -0.8 4,384 + BACOVA_01340 0.78 -0.6 4,385 - BACOVA_01340 0.78 -0.2 4,462 + +0.3 4,462 + -0.0 4,480 + +1.1 4,484 - +0.3 4,490 + -0.3 4,495 + -0.4 4,495 + -1.2 4,495 + -1.5 4,496 - -0.1 4,496 - +0.0 4,496 - +0.8 4,496 - -0.2 4,496 - +0.8 4,752 - BACOVA_01341 0.77 +0.5 4,798 + -0.5 4,818 + +0.1 4,818 + +0.1 4,819 - -0.2 4,824 + -0.3 4,825 - -0.3 4,895 - BACOVA_01342 0.11 -0.9 4,963 - BACOVA_01342 0.22 -1.5 4,985 + BACOVA_01342 0.25 -0.2 5,069 + BACOVA_01342 0.38 +0.3 5,069 + BACOVA_01342 0.38 +0.6 5,070 - BACOVA_01342 0.38 -1.5 5,083 + BACOVA_01342 0.40 +0.5 5,084 - BACOVA_01342 0.41 -1.6 5,084 - BACOVA_01342 0.41 -0.2 5,114 - BACOVA_01342 0.45 -1.2 5,128 + BACOVA_01342 0.47 -1.6 5,223 + BACOVA_01342 0.62 -1.1 5,242 + BACOVA_01342 0.65 -0.0 5,243 - BACOVA_01342 0.65 -0.2 5,246 - BACOVA_01342 0.66 -0.2 5,265 - BACOVA_01342 0.69 +0.2 5,306 + BACOVA_01342 0.75 -0.9 5,306 + BACOVA_01342 0.75 -1.6 5,307 - BACOVA_01342 0.75 +1.1 5,355 + BACOVA_01342 0.83 -1.2 5,355 + BACOVA_01342 0.83 -0.4 5,358 + BACOVA_01342 0.83 -0.3 5,361 + BACOVA_01342 0.84 -0.0 5,410 + -0.7 5,411 - -0.7 5,411 - +0.2 5,432 + +0.2 5,440 + -0.2 5,440 + -0.1 5,441 - -0.3 5,441 - +0.0 5,441 - -0.1 5,445 - -0.5 5,445 - -0.5 5,505 - -0.5 5,505 - -0.2 5,515 - +0.2 5,532 + -0.3 5,533 - +0.8 5,538 + -0.0 5,539 - -0.0 5,581 + +0.1 5,581 + -0.5 5,658 + BACOVA_01343 0.16 -0.2 5,658 + BACOVA_01343 0.16 -0.1 5,659 - BACOVA_01343 0.16 +0.6 5,694 - BACOVA_01343 0.20 -1.6 5,694 - BACOVA_01343 0.20 -0.1 5,706 - BACOVA_01343 0.22 +0.2 5,802 + BACOVA_01343 0.34 -0.0 5,802 + BACOVA_01343 0.34 -0.5 5,803 - BACOVA_01343 0.34 -0.9 5,849 - BACOVA_01343 0.40 +0.8 5,996 + BACOVA_01343 0.59 -0.8 5,996 + BACOVA_01343 0.59 +0.2 6,002 + BACOVA_01343 0.60 -0.1 6,003 - BACOVA_01343 0.60 -0.3 6,003 - BACOVA_01343 0.60 -0.7 6,050 + BACOVA_01343 0.66 +0.8 6,052 + BACOVA_01343 0.67 -0.8 6,060 + BACOVA_01343 0.68 -1.0 6,072 + BACOVA_01343 0.69 -0.0 6,073 - BACOVA_01343 0.69 +0.2 6,097 + BACOVA_01343 0.72 -0.7 6,119 - BACOVA_01343 0.75 -0.2 6,127 + BACOVA_01343 0.76 +0.5 6,128 - BACOVA_01343 0.76 -2.0 6,172 + BACOVA_01343 0.82 +0.1 6,172 + BACOVA_01343 0.82 -0.3 6,172 - BACOVA_01343 0.82 +0.2 6,173 - BACOVA_01343 0.82 -1.2 6,203 + BACOVA_01343 0.86 -0.1 6,204 - BACOVA_01343 0.86 -0.3 6,204 - BACOVA_01343 0.86 +0.3 6,204 - BACOVA_01343 0.86 +0.5 6,205 + BACOVA_01343 0.86 -0.2 6,205 + BACOVA_01343 0.86 -0.4 6,208 + BACOVA_01343 0.87 -0.2 6,209 - BACOVA_01343 0.87 -0.5 6,209 - BACOVA_01343 0.87 +0.5 6,228 + BACOVA_01343 0.89 -0.2 6,228 + BACOVA_01343 0.89 -0.2 6,229 - BACOVA_01343 0.89 +0.5 6,229 - BACOVA_01343 0.89 -1.7 6,236 + -0.2 6,236 + +0.2 6,236 + +0.4 6,237 - -0.2 6,343 + -0.9 6,350 - -0.5 6,412 + +0.8 6,412 + +1.2 6,418 - -0.6
Or see this region's nucleotide sequence