Experiment: NAG 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05502 and BACOVA_05503 are separated by 30 nucleotides BACOVA_05503 and BACOVA_05504 are separated by 170 nucleotides BACOVA_05504 and BACOVA_05505 are separated by 22 nucleotides
BACOVA_05502: BACOVA_05502 - site-specific recombinase, phage integrase family, at 1,011,684 to 1,012,421
_05502
BACOVA_05503: BACOVA_05503 - hypothetical protein, at 1,012,452 to 1,012,586
_05503
BACOVA_05504: BACOVA_05504 - transcription termination/antitermination factor NusG, at 1,012,757 to 1,013,338
_05504
BACOVA_05505: BACOVA_05505 - polysaccharide biosynthesis/export protein, at 1,013,361 to 1,015,775
_05505
Position (kb)
1012
1013 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1011.531 kb on - strand at 1011.645 kb on + strand at 1011.645 kb on + strand at 1011.646 kb on - strand at 1011.682 kb on - strand at 1011.684 kb on - strand at 1011.684 kb on - strand at 1011.684 kb on - strand at 1011.684 kb on - strand at 1011.690 kb on - strand at 1011.738 kb on + strand at 1011.766 kb on - strand, within BACOVA_05502 at 1011.767 kb on + strand, within BACOVA_05502 at 1011.767 kb on + strand, within BACOVA_05502 at 1011.767 kb on + strand, within BACOVA_05502 at 1011.767 kb on + strand, within BACOVA_05502 at 1011.819 kb on - strand, within BACOVA_05502 at 1011.829 kb on - strand, within BACOVA_05502 at 1012.024 kb on + strand, within BACOVA_05502 at 1012.132 kb on - strand, within BACOVA_05502 at 1012.155 kb on - strand, within BACOVA_05502 at 1012.212 kb on + strand, within BACOVA_05502 at 1012.299 kb on - strand, within BACOVA_05502 at 1012.301 kb on - strand, within BACOVA_05502 at 1012.510 kb on + strand, within BACOVA_05503 at 1012.534 kb on - strand, within BACOVA_05503 at 1012.544 kb on + strand, within BACOVA_05503 at 1012.572 kb on + strand, within BACOVA_05503 at 1012.572 kb on + strand, within BACOVA_05503 at 1012.572 kb on + strand, within BACOVA_05503 at 1012.591 kb on + strand at 1012.592 kb on - strand at 1012.602 kb on + strand at 1012.633 kb on - strand at 1012.679 kb on - strand at 1012.690 kb on - strand at 1012.695 kb on - strand at 1012.706 kb on - strand at 1012.706 kb on - strand at 1012.709 kb on + strand at 1012.709 kb on + strand at 1012.709 kb on + strand at 1012.710 kb on - strand at 1012.712 kb on + strand at 1012.765 kb on - strand at 1012.876 kb on - strand, within BACOVA_05504 at 1012.955 kb on - strand, within BACOVA_05504 at 1013.150 kb on - strand, within BACOVA_05504 at 1013.242 kb on + strand, within BACOVA_05504 at 1013.265 kb on + strand, within BACOVA_05504 at 1013.270 kb on - strand, within BACOVA_05504 at 1013.294 kb on - strand at 1013.299 kb on + strand at 1013.310 kb on + strand at 1013.310 kb on + strand at 1013.549 kb on + strand at 1013.550 kb on - strand at 1013.550 kb on - strand at 1013.557 kb on + strand at 1013.583 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mM (C) remove 1,011,531 - -0.5 1,011,645 + -0.7 1,011,645 + +0.4 1,011,646 - +0.6 1,011,682 - +0.1 1,011,684 - -0.8 1,011,684 - -0.7 1,011,684 - -1.0 1,011,684 - +0.1 1,011,690 - -2.6 1,011,738 + -0.0 1,011,766 - BACOVA_05502 0.11 -0.4 1,011,767 + BACOVA_05502 0.11 -1.3 1,011,767 + BACOVA_05502 0.11 -0.6 1,011,767 + BACOVA_05502 0.11 -1.7 1,011,767 + BACOVA_05502 0.11 +0.1 1,011,819 - BACOVA_05502 0.18 -0.6 1,011,829 - BACOVA_05502 0.20 -1.4 1,012,024 + BACOVA_05502 0.46 -0.7 1,012,132 - BACOVA_05502 0.61 +0.2 1,012,155 - BACOVA_05502 0.64 +2.0 1,012,212 + BACOVA_05502 0.72 +0.8 1,012,299 - BACOVA_05502 0.83 +0.1 1,012,301 - BACOVA_05502 0.84 -0.7 1,012,510 + BACOVA_05503 0.43 +0.7 1,012,534 - BACOVA_05503 0.61 +0.1 1,012,544 + BACOVA_05503 0.68 +2.2 1,012,572 + BACOVA_05503 0.89 +0.4 1,012,572 + BACOVA_05503 0.89 +0.9 1,012,572 + BACOVA_05503 0.89 -0.7 1,012,591 + +1.6 1,012,592 - +0.0 1,012,602 + +2.0 1,012,633 - -0.3 1,012,679 - -0.4 1,012,690 - -0.2 1,012,695 - +0.8 1,012,706 - -0.6 1,012,706 - +0.5 1,012,709 + +0.5 1,012,709 + +0.5 1,012,709 + -0.2 1,012,710 - -0.3 1,012,712 + +0.2 1,012,765 - -0.1 1,012,876 - BACOVA_05504 0.20 -0.3 1,012,955 - BACOVA_05504 0.34 +1.0 1,013,150 - BACOVA_05504 0.68 +0.4 1,013,242 + BACOVA_05504 0.83 +0.4 1,013,265 + BACOVA_05504 0.87 +0.5 1,013,270 - BACOVA_05504 0.88 +0.9 1,013,294 - -1.6 1,013,299 + +0.6 1,013,310 + +0.0 1,013,310 + +0.6 1,013,549 + -0.5 1,013,550 - -0.6 1,013,550 - +0.5 1,013,557 + -1.2 1,013,583 - -1.8
Or see this region's nucleotide sequence