Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05414

Experiment: NAG 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05412 and BACOVA_05413 overlap by 4 nucleotidesBACOVA_05413 and BACOVA_05414 overlap by 53 nucleotidesBACOVA_05414 and BACOVA_05415 are separated by 101 nucleotidesBACOVA_05415 and BACOVA_05416 overlap by 17 nucleotides BACOVA_05412: BACOVA_05412 - hypothetical protein, at 891,842 to 892,195 _05412 BACOVA_05413: BACOVA_05413 - VirE N-terminal domain protein, at 892,192 to 892,791 _05413 BACOVA_05414: BACOVA_05414 - primase C terminal 2 (PriCT-2), at 892,739 to 894,544 _05414 BACOVA_05415: BACOVA_05415 - hypothetical protein, at 894,646 to 895,014 _05415 BACOVA_05416: BACOVA_05416 - relaxase/mobilization nuclease domain protein, at 894,998 to 895,897 _05416 Position (kb) 892 893 894 895Strain fitness (log2 ratio) -2 -1 0 1 2at 891.785 kb on - strandat 891.785 kb on - strandat 891.796 kb on - strandat 891.810 kb on - strandat 891.891 kb on - strand, within BACOVA_05412at 891.916 kb on - strand, within BACOVA_05412at 891.944 kb on - strand, within BACOVA_05412at 891.979 kb on - strand, within BACOVA_05412at 891.979 kb on - strand, within BACOVA_05412at 892.000 kb on - strand, within BACOVA_05412at 892.000 kb on - strand, within BACOVA_05412at 892.060 kb on - strand, within BACOVA_05412at 892.060 kb on - strand, within BACOVA_05412at 892.064 kb on - strand, within BACOVA_05412at 892.129 kb on + strand, within BACOVA_05412at 892.211 kb on - strandat 892.211 kb on - strandat 892.211 kb on - strandat 892.211 kb on - strandat 892.265 kb on + strand, within BACOVA_05413at 892.266 kb on - strand, within BACOVA_05413at 892.266 kb on - strand, within BACOVA_05413at 892.266 kb on - strand, within BACOVA_05413at 892.270 kb on - strand, within BACOVA_05413at 892.270 kb on - strand, within BACOVA_05413at 892.289 kb on - strand, within BACOVA_05413at 892.363 kb on + strand, within BACOVA_05413at 892.535 kb on + strand, within BACOVA_05413at 892.535 kb on + strand, within BACOVA_05413at 892.574 kb on + strand, within BACOVA_05413at 892.703 kb on - strand, within BACOVA_05413at 892.718 kb on - strand, within BACOVA_05413at 892.718 kb on - strand, within BACOVA_05413at 892.718 kb on - strand, within BACOVA_05413at 892.720 kb on - strand, within BACOVA_05413at 892.720 kb on - strand, within BACOVA_05413at 892.808 kb on - strandat 892.808 kb on - strandat 892.808 kb on - strandat 892.817 kb on - strandat 892.825 kb on + strandat 892.827 kb on + strandat 892.828 kb on - strandat 892.828 kb on - strandat 892.829 kb on + strandat 892.829 kb on + strandat 892.830 kb on - strandat 892.832 kb on - strandat 892.832 kb on - strandat 892.840 kb on - strandat 892.892 kb on - strandat 892.892 kb on - strandat 892.905 kb on - strandat 892.906 kb on + strandat 892.971 kb on - strand, within BACOVA_05414at 892.971 kb on - strand, within BACOVA_05414at 893.002 kb on + strand, within BACOVA_05414at 893.033 kb on + strand, within BACOVA_05414at 893.033 kb on + strand, within BACOVA_05414at 893.034 kb on - strand, within BACOVA_05414at 893.034 kb on - strand, within BACOVA_05414at 893.062 kb on + strand, within BACOVA_05414at 893.170 kb on + strand, within BACOVA_05414at 893.258 kb on - strand, within BACOVA_05414at 893.290 kb on - strand, within BACOVA_05414at 893.330 kb on - strand, within BACOVA_05414at 893.330 kb on - strand, within BACOVA_05414at 893.373 kb on + strand, within BACOVA_05414at 893.424 kb on + strand, within BACOVA_05414at 893.425 kb on - strand, within BACOVA_05414at 893.515 kb on + strand, within BACOVA_05414at 893.516 kb on - strand, within BACOVA_05414at 893.570 kb on - strand, within BACOVA_05414at 893.590 kb on + strand, within BACOVA_05414at 893.591 kb on - strand, within BACOVA_05414at 893.771 kb on + strand, within BACOVA_05414at 893.782 kb on - strand, within BACOVA_05414at 893.829 kb on + strand, within BACOVA_05414at 893.829 kb on + strand, within BACOVA_05414at 893.830 kb on - strand, within BACOVA_05414at 893.883 kb on - strand, within BACOVA_05414at 893.885 kb on - strand, within BACOVA_05414at 894.056 kb on - strand, within BACOVA_05414at 894.120 kb on + strand, within BACOVA_05414at 894.152 kb on - strand, within BACOVA_05414at 894.153 kb on + strand, within BACOVA_05414at 894.154 kb on - strand, within BACOVA_05414at 894.154 kb on - strand, within BACOVA_05414at 894.266 kb on - strand, within BACOVA_05414at 894.366 kb on - strandat 894.366 kb on - strandat 894.389 kb on - strandat 894.392 kb on - strandat 894.423 kb on - strandat 894.439 kb on - strandat 894.514 kb on - strandat 894.524 kb on - strandat 894.563 kb on - strandat 894.563 kb on - strandat 894.641 kb on + strandat 894.641 kb on + strandat 894.646 kb on - strandat 894.737 kb on - strand, within BACOVA_05415at 894.739 kb on - strand, within BACOVA_05415at 894.742 kb on + strand, within BACOVA_05415at 894.743 kb on - strand, within BACOVA_05415at 894.743 kb on - strand, within BACOVA_05415at 894.743 kb on - strand, within BACOVA_05415at 894.743 kb on - strand, within BACOVA_05415at 894.829 kb on - strand, within BACOVA_05415at 894.829 kb on - strand, within BACOVA_05415at 894.880 kb on - strand, within BACOVA_05415at 894.914 kb on - strand, within BACOVA_05415at 894.949 kb on - strand, within BACOVA_05415at 894.949 kb on - strand, within BACOVA_05415at 894.949 kb on - strand, within BACOVA_05415at 894.952 kb on - strand, within BACOVA_05415at 894.953 kb on + strand, within BACOVA_05415at 894.984 kb on - strandat 894.984 kb on - strandat 895.039 kb on - strandat 895.083 kb on + strandat 895.083 kb on + strandat 895.083 kb on + strandat 895.094 kb on + strand, within BACOVA_05416at 895.095 kb on - strand, within BACOVA_05416at 895.095 kb on - strand, within BACOVA_05416at 895.095 kb on - strand, within BACOVA_05416at 895.120 kb on + strand, within BACOVA_05416at 895.120 kb on + strand, within BACOVA_05416at 895.121 kb on - strand, within BACOVA_05416at 895.216 kb on + strand, within BACOVA_05416at 895.250 kb on - strand, within BACOVA_05416at 895.250 kb on - strand, within BACOVA_05416at 895.310 kb on + strand, within BACOVA_05416at 895.311 kb on - strand, within BACOVA_05416at 895.312 kb on + strand, within BACOVA_05416at 895.312 kb on + strand, within BACOVA_05416at 895.313 kb on - strand, within BACOVA_05416at 895.313 kb on - strand, within BACOVA_05416at 895.354 kb on + strand, within BACOVA_05416at 895.356 kb on + strand, within BACOVA_05416at 895.357 kb on - strand, within BACOVA_05416at 895.375 kb on + strand, within BACOVA_05416at 895.385 kb on - strand, within BACOVA_05416at 895.504 kb on - strand, within BACOVA_05416at 895.527 kb on - strand, within BACOVA_05416at 895.529 kb on - strand, within BACOVA_05416

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mM (C)
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891,785 - -2.6
891,785 - -1.1
891,796 - -0.9
891,810 - +0.3
891,891 - BACOVA_05412 0.14 +0.7
891,916 - BACOVA_05412 0.21 -0.7
891,944 - BACOVA_05412 0.29 +0.4
891,979 - BACOVA_05412 0.39 +1.7
891,979 - BACOVA_05412 0.39 +0.5
892,000 - BACOVA_05412 0.45 -0.3
892,000 - BACOVA_05412 0.45 +0.2
892,060 - BACOVA_05412 0.62 +0.3
892,060 - BACOVA_05412 0.62 -0.1
892,064 - BACOVA_05412 0.63 +0.6
892,129 + BACOVA_05412 0.81 +0.1
892,211 - +0.1
892,211 - -0.3
892,211 - -2.3
892,211 - -0.8
892,265 + BACOVA_05413 0.12 +0.1
892,266 - BACOVA_05413 0.12 -0.1
892,266 - BACOVA_05413 0.12 -0.6
892,266 - BACOVA_05413 0.12 -1.5
892,270 - BACOVA_05413 0.13 -0.3
892,270 - BACOVA_05413 0.13 +1.1
892,289 - BACOVA_05413 0.16 -1.2
892,363 + BACOVA_05413 0.28 -0.7
892,535 + BACOVA_05413 0.57 +0.1
892,535 + BACOVA_05413 0.57 +1.2
892,574 + BACOVA_05413 0.64 +0.7
892,703 - BACOVA_05413 0.85 -1.3
892,718 - BACOVA_05413 0.88 -0.5
892,718 - BACOVA_05413 0.88 +1.0
892,718 - BACOVA_05413 0.88 -0.2
892,720 - BACOVA_05413 0.88 -1.7
892,720 - BACOVA_05413 0.88 -0.6
892,808 - -1.3
892,808 - -0.8
892,808 - -0.3
892,817 - +1.4
892,825 + +1.3
892,827 + -1.5
892,828 - -0.4
892,828 - +0.7
892,829 + +0.4
892,829 + +1.0
892,830 - +0.7
892,832 - -0.6
892,832 - +2.7
892,840 - +0.1
892,892 - -2.7
892,892 - +0.7
892,905 - +1.3
892,906 + +1.2
892,971 - BACOVA_05414 0.13 +0.0
892,971 - BACOVA_05414 0.13 -1.7
893,002 + BACOVA_05414 0.15 +0.1
893,033 + BACOVA_05414 0.16 -0.1
893,033 + BACOVA_05414 0.16 -0.7
893,034 - BACOVA_05414 0.16 +2.7
893,034 - BACOVA_05414 0.16 +0.2
893,062 + BACOVA_05414 0.18 -0.9
893,170 + BACOVA_05414 0.24 -0.5
893,258 - BACOVA_05414 0.29 -0.6
893,290 - BACOVA_05414 0.31 +0.1
893,330 - BACOVA_05414 0.33 -0.9
893,330 - BACOVA_05414 0.33 -0.2
893,373 + BACOVA_05414 0.35 -1.0
893,424 + BACOVA_05414 0.38 -0.3
893,425 - BACOVA_05414 0.38 -0.4
893,515 + BACOVA_05414 0.43 +0.3
893,516 - BACOVA_05414 0.43 -1.2
893,570 - BACOVA_05414 0.46 +0.7
893,590 + BACOVA_05414 0.47 -0.2
893,591 - BACOVA_05414 0.47 -0.3
893,771 + BACOVA_05414 0.57 -0.2
893,782 - BACOVA_05414 0.58 -0.5
893,829 + BACOVA_05414 0.60 +1.7
893,829 + BACOVA_05414 0.60 -0.7
893,830 - BACOVA_05414 0.60 +0.1
893,883 - BACOVA_05414 0.63 +0.7
893,885 - BACOVA_05414 0.63 -0.9
894,056 - BACOVA_05414 0.73 -1.0
894,120 + BACOVA_05414 0.76 -1.3
894,152 - BACOVA_05414 0.78 +0.7
894,153 + BACOVA_05414 0.78 +1.7
894,154 - BACOVA_05414 0.78 -0.8
894,154 - BACOVA_05414 0.78 -1.4
894,266 - BACOVA_05414 0.85 -0.1
894,366 - -0.8
894,366 - -0.9
894,389 - -0.7
894,392 - +0.1
894,423 - -1.9
894,439 - +0.1
894,514 - -0.1
894,524 - -1.5
894,563 - -0.6
894,563 - +0.3
894,641 + +2.6
894,641 + +1.1
894,646 - +0.8
894,737 - BACOVA_05415 0.25 -1.0
894,739 - BACOVA_05415 0.25 +0.3
894,742 + BACOVA_05415 0.26 -1.8
894,743 - BACOVA_05415 0.26 -0.4
894,743 - BACOVA_05415 0.26 -1.9
894,743 - BACOVA_05415 0.26 +2.6
894,743 - BACOVA_05415 0.26 +0.5
894,829 - BACOVA_05415 0.50 +0.4
894,829 - BACOVA_05415 0.50 -0.2
894,880 - BACOVA_05415 0.63 -0.8
894,914 - BACOVA_05415 0.73 +0.2
894,949 - BACOVA_05415 0.82 -0.1
894,949 - BACOVA_05415 0.82 +0.0
894,949 - BACOVA_05415 0.82 -1.2
894,952 - BACOVA_05415 0.83 -2.2
894,953 + BACOVA_05415 0.83 -1.2
894,984 - +0.0
894,984 - +2.2
895,039 - -0.0
895,083 + +0.1
895,083 + -1.7
895,083 + +0.6
895,094 + BACOVA_05416 0.11 +0.3
895,095 - BACOVA_05416 0.11 +0.9
895,095 - BACOVA_05416 0.11 +1.1
895,095 - BACOVA_05416 0.11 +1.1
895,120 + BACOVA_05416 0.14 +0.3
895,120 + BACOVA_05416 0.14 -0.3
895,121 - BACOVA_05416 0.14 -0.4
895,216 + BACOVA_05416 0.24 -1.9
895,250 - BACOVA_05416 0.28 -1.5
895,250 - BACOVA_05416 0.28 +1.2
895,310 + BACOVA_05416 0.35 +0.6
895,311 - BACOVA_05416 0.35 +1.4
895,312 + BACOVA_05416 0.35 +0.5
895,312 + BACOVA_05416 0.35 -0.7
895,313 - BACOVA_05416 0.35 -0.2
895,313 - BACOVA_05416 0.35 +0.3
895,354 + BACOVA_05416 0.40 +1.1
895,356 + BACOVA_05416 0.40 +0.3
895,357 - BACOVA_05416 0.40 +0.1
895,375 + BACOVA_05416 0.42 +0.1
895,385 - BACOVA_05416 0.43 +0.0
895,504 - BACOVA_05416 0.56 -1.1
895,527 - BACOVA_05416 0.59 -0.2
895,529 - BACOVA_05416 0.59 +0.3

Or see this region's nucleotide sequence