Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04650

Experiment: NAG 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04648 and BACOVA_04649 are separated by 1 nucleotidesBACOVA_04649 and BACOVA_04650 are separated by 50 nucleotidesBACOVA_04650 and BACOVA_04651 are separated by 17 nucleotidesBACOVA_04651 and BACOVA_04652 overlap by 20 nucleotidesBACOVA_04652 and BACOVA_04653 are separated by 45 nucleotidesBACOVA_04653 and BACOVA_04654 are separated by 51 nucleotides BACOVA_04648: BACOVA_04648 - BRO family, N-terminal domain protein, at 39,070 to 39,879 _04648 BACOVA_04649: BACOVA_04649 - hypothetical protein, at 39,881 to 40,216 _04649 BACOVA_04650: BACOVA_04650 - hypothetical protein, at 40,267 to 41,439 _04650 BACOVA_04651: BACOVA_04651 - hypothetical protein, at 41,457 to 41,705 _04651 BACOVA_04652: BACOVA_04652 - DNA binding domain, excisionase family, at 41,686 to 42,000 _04652 BACOVA_04653: BACOVA_04653 - DNA binding domain, excisionase family, at 42,046 to 42,276 _04653 BACOVA_04654: BACOVA_04654 - hypothetical protein, at 42,328 to 42,450 _04654 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2 3at 39.308 kb on - strand, within BACOVA_04648at 39.308 kb on - strand, within BACOVA_04648at 39.662 kb on - strand, within BACOVA_04648at 39.744 kb on + strand, within BACOVA_04648at 40.096 kb on + strand, within BACOVA_04649at 40.150 kb on + strand, within BACOVA_04649at 40.150 kb on + strand, within BACOVA_04649at 40.150 kb on + strand, within BACOVA_04649at 40.154 kb on + strand, within BACOVA_04649at 40.222 kb on + strandat 40.230 kb on + strandat 40.230 kb on + strandat 40.230 kb on + strandat 40.249 kb on + strandat 40.260 kb on + strandat 40.330 kb on + strandat 40.355 kb on - strandat 40.469 kb on + strand, within BACOVA_04650at 40.469 kb on + strand, within BACOVA_04650at 41.039 kb on - strand, within BACOVA_04650at 41.053 kb on - strand, within BACOVA_04650at 41.053 kb on - strand, within BACOVA_04650at 41.246 kb on + strand, within BACOVA_04650at 41.246 kb on + strand, within BACOVA_04650at 41.272 kb on - strand, within BACOVA_04650at 41.359 kb on - strandat 41.453 kb on - strandat 41.458 kb on + strandat 41.465 kb on + strandat 41.469 kb on + strandat 41.469 kb on + strandat 41.469 kb on + strandat 41.469 kb on + strandat 41.516 kb on + strand, within BACOVA_04651at 41.651 kb on + strand, within BACOVA_04651at 41.687 kb on + strandat 41.734 kb on + strand, within BACOVA_04652at 41.737 kb on + strand, within BACOVA_04652at 41.846 kb on + strand, within BACOVA_04652at 41.877 kb on + strand, within BACOVA_04652at 41.879 kb on + strand, within BACOVA_04652at 41.896 kb on + strand, within BACOVA_04652at 41.909 kb on - strand, within BACOVA_04652at 41.947 kb on + strand, within BACOVA_04652at 41.986 kb on - strandat 42.051 kb on + strandat 42.073 kb on + strand, within BACOVA_04653at 42.165 kb on - strand, within BACOVA_04653at 42.217 kb on + strand, within BACOVA_04653at 42.218 kb on - strand, within BACOVA_04653at 42.232 kb on + strand, within BACOVA_04653at 42.264 kb on + strandat 42.285 kb on - strandat 42.285 kb on - strandat 42.285 kb on - strandat 42.297 kb on + strandat 42.301 kb on - strandat 42.317 kb on - strandat 42.338 kb on + strandat 42.391 kb on + strand, within BACOVA_04654at 42.433 kb on + strand, within BACOVA_04654

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mM (C)
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39,308 - BACOVA_04648 0.29 -2.4
39,308 - BACOVA_04648 0.29 +1.5
39,662 - BACOVA_04648 0.73 -0.3
39,744 + BACOVA_04648 0.83 +2.1
40,096 + BACOVA_04649 0.64 -1.4
40,150 + BACOVA_04649 0.80 -0.7
40,150 + BACOVA_04649 0.80 +1.0
40,150 + BACOVA_04649 0.80 +0.1
40,154 + BACOVA_04649 0.81 +3.3
40,222 + -0.6
40,230 + +0.5
40,230 + -0.1
40,230 + -1.0
40,249 + +0.1
40,260 + +0.8
40,330 + +0.1
40,355 - +1.0
40,469 + BACOVA_04650 0.17 +1.7
40,469 + BACOVA_04650 0.17 +0.7
41,039 - BACOVA_04650 0.66 -2.0
41,053 - BACOVA_04650 0.67 +0.4
41,053 - BACOVA_04650 0.67 +0.4
41,246 + BACOVA_04650 0.83 +3.7
41,246 + BACOVA_04650 0.83 +1.5
41,272 - BACOVA_04650 0.86 -0.6
41,359 - +1.7
41,453 - +0.1
41,458 + +0.5
41,465 + -1.7
41,469 + -0.3
41,469 + -0.3
41,469 + +0.7
41,469 + -0.1
41,516 + BACOVA_04651 0.24 -0.7
41,651 + BACOVA_04651 0.78 -1.1
41,687 + -0.8
41,734 + BACOVA_04652 0.15 -0.0
41,737 + BACOVA_04652 0.16 -1.1
41,846 + BACOVA_04652 0.51 -1.7
41,877 + BACOVA_04652 0.61 +0.6
41,879 + BACOVA_04652 0.61 -1.3
41,896 + BACOVA_04652 0.67 -0.3
41,909 - BACOVA_04652 0.71 -0.1
41,947 + BACOVA_04652 0.83 -0.2
41,986 - -0.3
42,051 + -0.9
42,073 + BACOVA_04653 0.12 +1.2
42,165 - BACOVA_04653 0.52 +1.7
42,217 + BACOVA_04653 0.74 +0.4
42,218 - BACOVA_04653 0.74 -0.3
42,232 + BACOVA_04653 0.81 +0.7
42,264 + -0.0
42,285 - +1.7
42,285 - +0.7
42,285 - -1.1
42,297 + -1.0
42,301 - +0.7
42,317 - +0.1
42,338 + -1.0
42,391 + BACOVA_04654 0.51 -0.8
42,433 + BACOVA_04654 0.85 +1.1

Or see this region's nucleotide sequence