Experiment: NAG 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04182 and BACOVA_04183 are separated by 119 nucleotides BACOVA_04183 and BACOVA_04184 overlap by 4 nucleotides BACOVA_04184 and BACOVA_04185 overlap by 14 nucleotides
BACOVA_04182: BACOVA_04182 - PKD domain protein, at 55,355 to 56,926
_04182
BACOVA_04183: BACOVA_04183 - hypothetical protein, at 57,046 to 57,228
_04183
BACOVA_04184: BACOVA_04184 - BNR/Asp-box repeat protein, at 57,225 to 58,385
_04184
BACOVA_04185: BACOVA_04185 - SusD family protein, at 58,372 to 59,826
_04185
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 56.261 kb on + strand, within BACOVA_04182 at 56.272 kb on + strand, within BACOVA_04182 at 56.272 kb on + strand, within BACOVA_04182 at 56.274 kb on + strand, within BACOVA_04182 at 56.274 kb on + strand, within BACOVA_04182 at 56.275 kb on - strand, within BACOVA_04182 at 56.287 kb on - strand, within BACOVA_04182 at 56.287 kb on - strand, within BACOVA_04182 at 56.347 kb on + strand, within BACOVA_04182 at 56.350 kb on - strand, within BACOVA_04182 at 56.360 kb on + strand, within BACOVA_04182 at 56.401 kb on + strand, within BACOVA_04182 at 56.407 kb on + strand, within BACOVA_04182 at 56.455 kb on + strand, within BACOVA_04182 at 56.516 kb on - strand, within BACOVA_04182 at 56.536 kb on + strand, within BACOVA_04182 at 56.540 kb on - strand, within BACOVA_04182 at 56.540 kb on - strand, within BACOVA_04182 at 56.557 kb on + strand, within BACOVA_04182 at 56.558 kb on - strand, within BACOVA_04182 at 56.585 kb on + strand, within BACOVA_04182 at 56.586 kb on - strand, within BACOVA_04182 at 56.609 kb on - strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.640 kb on + strand, within BACOVA_04182 at 56.687 kb on - strand, within BACOVA_04182 at 56.691 kb on + strand, within BACOVA_04182 at 56.691 kb on + strand, within BACOVA_04182 at 56.712 kb on - strand, within BACOVA_04182 at 56.759 kb on - strand, within BACOVA_04182 at 56.774 kb on - strand at 56.774 kb on - strand at 56.777 kb on - strand at 56.843 kb on + strand at 56.879 kb on + strand at 56.879 kb on + strand at 56.879 kb on + strand at 56.883 kb on - strand at 56.935 kb on + strand at 56.936 kb on - strand at 56.936 kb on - strand at 57.047 kb on + strand at 57.048 kb on - strand at 57.075 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.079 kb on + strand, within BACOVA_04183 at 57.080 kb on - strand, within BACOVA_04183 at 57.080 kb on - strand, within BACOVA_04183 at 57.080 kb on - strand, within BACOVA_04183 at 57.086 kb on + strand, within BACOVA_04183 at 57.111 kb on + strand, within BACOVA_04183 at 57.128 kb on - strand, within BACOVA_04183 at 57.136 kb on - strand, within BACOVA_04183 at 57.136 kb on - strand, within BACOVA_04183 at 57.136 kb on - strand, within BACOVA_04183 at 57.139 kb on + strand, within BACOVA_04183 at 57.148 kb on + strand, within BACOVA_04183 at 57.154 kb on + strand, within BACOVA_04183 at 57.208 kb on + strand, within BACOVA_04183 at 57.212 kb on + strand at 57.212 kb on + strand at 57.212 kb on + strand at 57.213 kb on - strand at 57.213 kb on - strand at 57.296 kb on - strand at 57.297 kb on + strand at 57.298 kb on - strand at 57.298 kb on - strand at 57.300 kb on - strand at 57.358 kb on + strand, within BACOVA_04184 at 57.365 kb on + strand, within BACOVA_04184 at 57.366 kb on - strand, within BACOVA_04184 at 57.407 kb on + strand, within BACOVA_04184 at 57.411 kb on - strand, within BACOVA_04184 at 57.416 kb on + strand, within BACOVA_04184 at 57.419 kb on + strand, within BACOVA_04184 at 57.420 kb on - strand, within BACOVA_04184 at 57.423 kb on - strand, within BACOVA_04184 at 57.423 kb on - strand, within BACOVA_04184 at 57.468 kb on + strand, within BACOVA_04184 at 57.469 kb on - strand, within BACOVA_04184 at 57.474 kb on + strand, within BACOVA_04184 at 57.475 kb on - strand, within BACOVA_04184 at 57.477 kb on + strand, within BACOVA_04184 at 57.477 kb on + strand, within BACOVA_04184 at 57.480 kb on - strand, within BACOVA_04184 at 57.482 kb on + strand, within BACOVA_04184 at 57.483 kb on - strand, within BACOVA_04184 at 57.494 kb on + strand, within BACOVA_04184 at 57.537 kb on + strand, within BACOVA_04184 at 57.537 kb on + strand, within BACOVA_04184 at 57.539 kb on + strand, within BACOVA_04184 at 57.539 kb on + strand, within BACOVA_04184 at 57.540 kb on - strand, within BACOVA_04184 at 57.540 kb on - strand, within BACOVA_04184 at 57.554 kb on + strand, within BACOVA_04184 at 57.557 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.700 kb on + strand, within BACOVA_04184 at 57.704 kb on + strand, within BACOVA_04184 at 57.704 kb on + strand, within BACOVA_04184 at 57.723 kb on + strand, within BACOVA_04184 at 57.743 kb on + strand, within BACOVA_04184 at 57.747 kb on - strand, within BACOVA_04184 at 57.751 kb on + strand, within BACOVA_04184 at 57.752 kb on - strand, within BACOVA_04184 at 57.765 kb on + strand, within BACOVA_04184 at 57.901 kb on + strand, within BACOVA_04184 at 57.906 kb on - strand, within BACOVA_04184 at 57.907 kb on + strand, within BACOVA_04184 at 57.908 kb on - strand, within BACOVA_04184 at 57.910 kb on + strand, within BACOVA_04184 at 57.910 kb on + strand, within BACOVA_04184 at 57.998 kb on + strand, within BACOVA_04184 at 58.062 kb on + strand, within BACOVA_04184 at 58.071 kb on - strand, within BACOVA_04184 at 58.116 kb on + strand, within BACOVA_04184 at 58.117 kb on - strand, within BACOVA_04184 at 58.171 kb on - strand, within BACOVA_04184 at 58.175 kb on + strand, within BACOVA_04184 at 58.176 kb on - strand, within BACOVA_04184 at 58.178 kb on + strand, within BACOVA_04184 at 58.203 kb on + strand, within BACOVA_04184 at 58.204 kb on - strand, within BACOVA_04184 at 58.208 kb on + strand, within BACOVA_04184 at 58.208 kb on + strand, within BACOVA_04184 at 58.209 kb on - strand, within BACOVA_04184 at 58.219 kb on + strand, within BACOVA_04184 at 58.239 kb on - strand, within BACOVA_04184 at 58.240 kb on + strand, within BACOVA_04184 at 58.240 kb on + strand, within BACOVA_04184 at 58.241 kb on - strand, within BACOVA_04184 at 58.246 kb on + strand, within BACOVA_04184 at 58.247 kb on - strand, within BACOVA_04184 at 58.299 kb on - strand at 58.338 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.357 kb on - strand at 58.358 kb on + strand at 58.358 kb on + strand at 58.358 kb on + strand at 58.359 kb on - strand at 58.359 kb on - strand at 58.413 kb on + strand at 58.414 kb on - strand at 58.417 kb on - strand at 58.417 kb on - strand at 58.447 kb on + strand at 58.459 kb on - strand at 58.461 kb on + strand at 58.471 kb on - strand at 58.471 kb on - strand at 58.503 kb on - strand at 58.503 kb on - strand at 58.510 kb on + strand at 58.510 kb on + strand at 58.510 kb on + strand at 58.511 kb on - strand at 58.566 kb on - strand, within BACOVA_04185 at 58.567 kb on + strand, within BACOVA_04185 at 58.567 kb on + strand, within BACOVA_04185 at 58.620 kb on + strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.635 kb on + strand, within BACOVA_04185 at 58.636 kb on - strand, within BACOVA_04185 at 58.639 kb on + strand, within BACOVA_04185 at 58.666 kb on + strand, within BACOVA_04185 at 58.706 kb on + strand, within BACOVA_04185 at 58.727 kb on + strand, within BACOVA_04185 at 58.752 kb on + strand, within BACOVA_04185 at 58.767 kb on - strand, within BACOVA_04185 at 58.770 kb on + strand, within BACOVA_04185 at 58.771 kb on - strand, within BACOVA_04185 at 58.842 kb on + strand, within BACOVA_04185 at 58.842 kb on + strand, within BACOVA_04185 at 58.843 kb on - strand, within BACOVA_04185 at 58.852 kb on - strand, within BACOVA_04185 at 58.873 kb on - strand, within BACOVA_04185 at 58.890 kb on - strand, within BACOVA_04185 at 58.926 kb on + strand, within BACOVA_04185 at 58.949 kb on + strand, within BACOVA_04185 at 58.987 kb on + strand, within BACOVA_04185 at 59.014 kb on - strand, within BACOVA_04185 at 59.057 kb on - strand, within BACOVA_04185 at 59.076 kb on + strand, within BACOVA_04185 at 59.076 kb on + strand, within BACOVA_04185 at 59.077 kb on - strand, within BACOVA_04185 at 59.077 kb on - strand, within BACOVA_04185 at 59.079 kb on + strand, within BACOVA_04185 at 59.089 kb on - strand, within BACOVA_04185 at 59.121 kb on + strand, within BACOVA_04185 at 59.122 kb on - strand, within BACOVA_04185 at 59.122 kb on - strand, within BACOVA_04185 at 59.145 kb on + strand, within BACOVA_04185 at 59.219 kb on + strand, within BACOVA_04185 at 59.302 kb on + strand, within BACOVA_04185 at 59.303 kb on - strand, within BACOVA_04185 at 59.342 kb on - strand, within BACOVA_04185 at 59.353 kb on - strand, within BACOVA_04185 at 59.380 kb on + strand, within BACOVA_04185 at 59.381 kb on - strand, within BACOVA_04185 at 59.382 kb on + strand, within BACOVA_04185
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mM (C) remove 56,261 + BACOVA_04182 0.58 -0.4 56,272 + BACOVA_04182 0.58 -0.6 56,272 + BACOVA_04182 0.58 -0.6 56,274 + BACOVA_04182 0.58 -1.2 56,274 + BACOVA_04182 0.58 -0.3 56,275 - BACOVA_04182 0.59 -0.4 56,287 - BACOVA_04182 0.59 +1.1 56,287 - BACOVA_04182 0.59 +0.3 56,347 + BACOVA_04182 0.63 -1.2 56,350 - BACOVA_04182 0.63 +0.9 56,360 + BACOVA_04182 0.64 -0.4 56,401 + BACOVA_04182 0.67 -1.1 56,407 + BACOVA_04182 0.67 +0.9 56,455 + BACOVA_04182 0.70 +1.1 56,516 - BACOVA_04182 0.74 -0.7 56,536 + BACOVA_04182 0.75 -0.1 56,540 - BACOVA_04182 0.75 +1.1 56,540 - BACOVA_04182 0.75 -1.5 56,557 + BACOVA_04182 0.76 -0.2 56,558 - BACOVA_04182 0.77 -0.3 56,585 + BACOVA_04182 0.78 +0.3 56,586 - BACOVA_04182 0.78 -0.8 56,609 - BACOVA_04182 0.80 +0.9 56,611 + BACOVA_04182 0.80 +1.2 56,611 + BACOVA_04182 0.80 +0.3 56,611 + BACOVA_04182 0.80 -0.7 56,611 + BACOVA_04182 0.80 +2.2 56,611 + BACOVA_04182 0.80 +0.1 56,611 + BACOVA_04182 0.80 -1.4 56,611 + BACOVA_04182 0.80 -1.2 56,611 + BACOVA_04182 0.80 -1.4 56,640 + BACOVA_04182 0.82 +0.1 56,687 - BACOVA_04182 0.85 -1.5 56,691 + BACOVA_04182 0.85 -0.7 56,691 + BACOVA_04182 0.85 +0.5 56,712 - BACOVA_04182 0.86 -0.4 56,759 - BACOVA_04182 0.89 -0.8 56,774 - +1.6 56,774 - +0.2 56,777 - +0.1 56,843 + +0.3 56,879 + +0.5 56,879 + +0.9 56,879 + +0.2 56,883 - -1.4 56,935 + +2.2 56,936 - -0.9 56,936 - -1.7 57,047 + +0.4 57,048 - -0.2 57,075 + BACOVA_04183 0.16 -1.9 57,077 + BACOVA_04183 0.17 +0.9 57,077 + BACOVA_04183 0.17 +1.5 57,077 + BACOVA_04183 0.17 -0.5 57,077 + BACOVA_04183 0.17 +0.9 57,077 + BACOVA_04183 0.17 +1.6 57,079 + BACOVA_04183 0.18 +0.5 57,080 - BACOVA_04183 0.19 +1.6 57,080 - BACOVA_04183 0.19 -0.7 57,080 - BACOVA_04183 0.19 +0.1 57,086 + BACOVA_04183 0.22 +3.6 57,111 + BACOVA_04183 0.36 +0.4 57,128 - BACOVA_04183 0.45 +0.2 57,136 - BACOVA_04183 0.49 +0.1 57,136 - BACOVA_04183 0.49 +1.6 57,136 - BACOVA_04183 0.49 -0.2 57,139 + BACOVA_04183 0.51 -0.9 57,148 + BACOVA_04183 0.56 -0.2 57,154 + BACOVA_04183 0.59 -0.5 57,208 + BACOVA_04183 0.89 +0.2 57,212 + -0.8 57,212 + -0.5 57,212 + -1.4 57,213 - -0.3 57,213 - +3.1 57,296 - -0.9 57,297 + +2.6 57,298 - +0.4 57,298 - +1.1 57,300 - +0.1 57,358 + BACOVA_04184 0.11 +0.8 57,365 + BACOVA_04184 0.12 -0.3 57,366 - BACOVA_04184 0.12 -1.8 57,407 + BACOVA_04184 0.16 +1.6 57,411 - BACOVA_04184 0.16 +1.2 57,416 + BACOVA_04184 0.16 -0.9 57,419 + BACOVA_04184 0.17 -0.4 57,420 - BACOVA_04184 0.17 -0.4 57,423 - BACOVA_04184 0.17 +0.1 57,423 - BACOVA_04184 0.17 +0.2 57,468 + BACOVA_04184 0.21 +1.6 57,469 - BACOVA_04184 0.21 +0.1 57,474 + BACOVA_04184 0.21 +0.1 57,475 - BACOVA_04184 0.22 +0.1 57,477 + BACOVA_04184 0.22 +0.6 57,477 + BACOVA_04184 0.22 -0.1 57,480 - BACOVA_04184 0.22 +0.1 57,482 + BACOVA_04184 0.22 -1.2 57,483 - BACOVA_04184 0.22 +0.9 57,494 + BACOVA_04184 0.23 -0.0 57,537 + BACOVA_04184 0.27 +1.1 57,537 + BACOVA_04184 0.27 +0.6 57,539 + BACOVA_04184 0.27 -0.5 57,539 + BACOVA_04184 0.27 +0.2 57,540 - BACOVA_04184 0.27 +0.6 57,540 - BACOVA_04184 0.27 +0.6 57,554 + BACOVA_04184 0.28 -0.7 57,557 + BACOVA_04184 0.29 -1.2 57,603 + BACOVA_04184 0.33 -1.0 57,603 + BACOVA_04184 0.33 -0.4 57,603 + BACOVA_04184 0.33 -0.4 57,700 + BACOVA_04184 0.41 +0.4 57,704 + BACOVA_04184 0.41 -0.2 57,704 + BACOVA_04184 0.41 -0.4 57,723 + BACOVA_04184 0.43 +0.4 57,743 + BACOVA_04184 0.45 -0.1 57,747 - BACOVA_04184 0.45 +1.2 57,751 + BACOVA_04184 0.45 -0.4 57,752 - BACOVA_04184 0.45 -1.5 57,765 + BACOVA_04184 0.47 -1.1 57,901 + BACOVA_04184 0.58 -0.9 57,906 - BACOVA_04184 0.59 -0.4 57,907 + BACOVA_04184 0.59 -0.2 57,908 - BACOVA_04184 0.59 +1.6 57,910 + BACOVA_04184 0.59 -0.8 57,910 + BACOVA_04184 0.59 -1.2 57,998 + BACOVA_04184 0.67 -0.2 58,062 + BACOVA_04184 0.72 +0.6 58,071 - BACOVA_04184 0.73 +0.9 58,116 + BACOVA_04184 0.77 -3.3 58,117 - BACOVA_04184 0.77 -1.2 58,171 - BACOVA_04184 0.81 +0.8 58,175 + BACOVA_04184 0.82 -0.6 58,176 - BACOVA_04184 0.82 -0.8 58,178 + BACOVA_04184 0.82 +0.1 58,203 + BACOVA_04184 0.84 -0.2 58,204 - BACOVA_04184 0.84 +0.6 58,208 + BACOVA_04184 0.85 -0.4 58,208 + BACOVA_04184 0.85 -1.1 58,209 - BACOVA_04184 0.85 +0.6 58,219 + BACOVA_04184 0.86 +3.2 58,239 - BACOVA_04184 0.87 +0.6 58,240 + BACOVA_04184 0.87 -0.4 58,240 + BACOVA_04184 0.87 -0.0 58,241 - BACOVA_04184 0.88 -0.1 58,246 + BACOVA_04184 0.88 -1.2 58,247 - BACOVA_04184 0.88 -0.2 58,299 - +0.1 58,338 + -0.1 58,356 + -1.8 58,356 + -0.2 58,357 - +0.8 58,358 + +1.0 58,358 + -0.1 58,358 + +0.6 58,359 - +0.6 58,359 - -0.7 58,413 + -0.1 58,414 - -0.2 58,417 - +0.1 58,417 - -1.2 58,447 + -0.4 58,459 - -1.2 58,461 + -0.9 58,471 - -2.2 58,471 - +0.3 58,503 - -0.7 58,503 - -0.4 58,510 + +0.2 58,510 + +0.3 58,510 + +0.1 58,511 - -0.7 58,566 - BACOVA_04185 0.13 +1.6 58,567 + BACOVA_04185 0.13 -1.2 58,567 + BACOVA_04185 0.13 -0.7 58,620 + BACOVA_04185 0.17 +0.6 58,632 - BACOVA_04185 0.18 -0.7 58,632 - BACOVA_04185 0.18 -0.7 58,632 - BACOVA_04185 0.18 +0.0 58,635 + BACOVA_04185 0.18 -0.1 58,636 - BACOVA_04185 0.18 +1.4 58,639 + BACOVA_04185 0.18 +0.1 58,666 + BACOVA_04185 0.20 +0.3 58,706 + BACOVA_04185 0.23 +0.3 58,727 + BACOVA_04185 0.24 -1.7 58,752 + BACOVA_04185 0.26 +0.9 58,767 - BACOVA_04185 0.27 -0.2 58,770 + BACOVA_04185 0.27 -0.2 58,771 - BACOVA_04185 0.27 +0.6 58,842 + BACOVA_04185 0.32 +0.1 58,842 + BACOVA_04185 0.32 -0.9 58,843 - BACOVA_04185 0.32 +0.5 58,852 - BACOVA_04185 0.33 -1.0 58,873 - BACOVA_04185 0.34 -0.1 58,890 - BACOVA_04185 0.36 -0.5 58,926 + BACOVA_04185 0.38 +0.3 58,949 + BACOVA_04185 0.40 -0.9 58,987 + BACOVA_04185 0.42 +0.2 59,014 - BACOVA_04185 0.44 +0.8 59,057 - BACOVA_04185 0.47 +0.3 59,076 + BACOVA_04185 0.48 +0.1 59,076 + BACOVA_04185 0.48 +0.9 59,077 - BACOVA_04185 0.48 +0.9 59,077 - BACOVA_04185 0.48 -0.4 59,079 + BACOVA_04185 0.49 +0.3 59,089 - BACOVA_04185 0.49 -0.4 59,121 + BACOVA_04185 0.51 -0.3 59,122 - BACOVA_04185 0.52 +0.2 59,122 - BACOVA_04185 0.52 +1.3 59,145 + BACOVA_04185 0.53 -0.5 59,219 + BACOVA_04185 0.58 -0.7 59,302 + BACOVA_04185 0.64 -0.9 59,303 - BACOVA_04185 0.64 -1.2 59,342 - BACOVA_04185 0.67 +0.4 59,353 - BACOVA_04185 0.67 +0.1 59,380 + BACOVA_04185 0.69 +0.3 59,381 - BACOVA_04185 0.69 -0.9 59,382 + BACOVA_04185 0.69 -1.4
Or see this region's nucleotide sequence