Experiment: NAG 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02146 and BACOVA_02147 are separated by 40 nucleotides BACOVA_02147 and BACOVA_02148 are separated by 37 nucleotides BACOVA_02148 and BACOVA_02149 are separated by 88 nucleotides BACOVA_02149 and BACOVA_02150 are separated by 83 nucleotides BACOVA_02150 and BACOVA_02151 are separated by 330 nucleotides BACOVA_02151 and BACOVA_02152 are separated by 94 nucleotides
BACOVA_02146: BACOVA_02146 - hypothetical protein, at 486,542 to 486,700
_02146
BACOVA_02147: BACOVA_02147 - hypothetical protein, at 486,741 to 486,971
_02147
BACOVA_02148: BACOVA_02148 - hypothetical protein, at 487,009 to 487,191
_02148
BACOVA_02149: BACOVA_02149 - hypothetical protein, at 487,280 to 487,504
_02149
BACOVA_02150: BACOVA_02150 - hypothetical protein, at 487,588 to 487,863
_02150
BACOVA_02151: BACOVA_02151 - hypothetical protein, at 488,194 to 488,451
_02151
BACOVA_02152: BACOVA_02152 - resolvase, N-terminal domain protein, at 488,546 to 490,384
_02152
Position (kb) 487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 486.628 kb on + strand, within BACOVA_02146 at 486.655 kb on + strand, within BACOVA_02146 at 486.656 kb on - strand, within BACOVA_02146 at 486.671 kb on - strand, within BACOVA_02146 at 486.671 kb on - strand, within BACOVA_02146 at 486.675 kb on + strand, within BACOVA_02146 at 486.694 kb on - strand at 486.696 kb on + strand at 486.696 kb on + strand at 486.696 kb on + strand at 486.698 kb on + strand at 486.698 kb on + strand at 486.711 kb on + strand at 486.712 kb on - strand at 486.733 kb on + strand at 486.733 kb on + strand at 486.736 kb on + strand at 486.741 kb on - strand at 486.781 kb on + strand, within BACOVA_02147 at 486.782 kb on - strand, within BACOVA_02147 at 486.784 kb on + strand, within BACOVA_02147 at 486.784 kb on + strand, within BACOVA_02147 at 486.787 kb on + strand, within BACOVA_02147 at 486.820 kb on + strand, within BACOVA_02147 at 486.837 kb on - strand, within BACOVA_02147 at 486.839 kb on + strand, within BACOVA_02147 at 486.839 kb on + strand, within BACOVA_02147 at 486.839 kb on + strand, within BACOVA_02147 at 486.840 kb on - strand, within BACOVA_02147 at 486.853 kb on + strand, within BACOVA_02147 at 486.853 kb on + strand, within BACOVA_02147 at 486.888 kb on - strand, within BACOVA_02147 at 486.896 kb on + strand, within BACOVA_02147 at 486.899 kb on - strand, within BACOVA_02147 at 486.910 kb on + strand, within BACOVA_02147 at 486.923 kb on - strand, within BACOVA_02147 at 486.923 kb on - strand, within BACOVA_02147 at 486.923 kb on - strand, within BACOVA_02147 at 486.935 kb on - strand, within BACOVA_02147 at 486.944 kb on + strand, within BACOVA_02147 at 486.945 kb on - strand, within BACOVA_02147 at 486.945 kb on - strand, within BACOVA_02147 at 486.949 kb on + strand at 486.950 kb on - strand at 486.969 kb on + strand at 486.970 kb on - strand at 486.983 kb on + strand at 486.989 kb on - strand at 487.000 kb on - strand at 487.005 kb on - strand at 487.009 kb on - strand at 487.042 kb on - strand, within BACOVA_02148 at 487.044 kb on + strand, within BACOVA_02148 at 487.097 kb on + strand, within BACOVA_02148 at 487.121 kb on + strand, within BACOVA_02148 at 487.121 kb on + strand, within BACOVA_02148 at 487.122 kb on - strand, within BACOVA_02148 at 487.122 kb on - strand, within BACOVA_02148 at 487.125 kb on + strand, within BACOVA_02148 at 487.144 kb on - strand, within BACOVA_02148 at 487.144 kb on - strand, within BACOVA_02148 at 487.144 kb on - strand, within BACOVA_02148 at 487.149 kb on - strand, within BACOVA_02148 at 487.195 kb on + strand at 487.196 kb on - strand at 487.199 kb on - strand at 487.199 kb on - strand at 487.199 kb on - strand at 487.199 kb on - strand at 487.209 kb on + strand at 487.227 kb on + strand at 487.251 kb on - strand at 487.257 kb on - strand at 487.257 kb on - strand at 487.263 kb on - strand at 487.263 kb on - strand at 487.271 kb on + strand at 487.301 kb on + strand at 487.302 kb on - strand at 487.302 kb on - strand at 487.302 kb on - strand at 487.312 kb on - strand, within BACOVA_02149 at 487.315 kb on - strand, within BACOVA_02149 at 487.315 kb on - strand, within BACOVA_02149 at 487.338 kb on + strand, within BACOVA_02149 at 487.386 kb on + strand, within BACOVA_02149 at 487.396 kb on + strand, within BACOVA_02149 at 487.406 kb on - strand, within BACOVA_02149 at 487.406 kb on - strand, within BACOVA_02149 at 487.456 kb on + strand, within BACOVA_02149 at 487.545 kb on + strand at 487.563 kb on + strand at 487.564 kb on - strand at 487.564 kb on - strand at 487.564 kb on - strand at 487.573 kb on + strand at 487.573 kb on + strand at 487.574 kb on - strand at 487.574 kb on - strand at 487.576 kb on + strand at 487.576 kb on + strand at 487.578 kb on + strand at 487.578 kb on + strand at 487.587 kb on + strand at 487.588 kb on - strand at 487.588 kb on - strand at 487.588 kb on - strand at 487.648 kb on + strand, within BACOVA_02150 at 487.649 kb on - strand, within BACOVA_02150 at 487.680 kb on - strand, within BACOVA_02150 at 487.680 kb on - strand, within BACOVA_02150 at 487.680 kb on - strand, within BACOVA_02150 at 487.703 kb on + strand, within BACOVA_02150 at 487.703 kb on + strand, within BACOVA_02150 at 487.704 kb on - strand, within BACOVA_02150 at 487.704 kb on - strand, within BACOVA_02150 at 487.706 kb on - strand, within BACOVA_02150 at 487.706 kb on - strand, within BACOVA_02150 at 487.718 kb on + strand, within BACOVA_02150 at 487.722 kb on + strand, within BACOVA_02150 at 487.722 kb on + strand, within BACOVA_02150 at 487.722 kb on + strand, within BACOVA_02150 at 487.724 kb on + strand, within BACOVA_02150 at 487.724 kb on + strand, within BACOVA_02150 at 487.741 kb on + strand, within BACOVA_02150 at 487.742 kb on - strand, within BACOVA_02150 at 487.753 kb on - strand, within BACOVA_02150 at 487.753 kb on - strand, within BACOVA_02150 at 487.784 kb on + strand, within BACOVA_02150 at 487.785 kb on - strand, within BACOVA_02150 at 487.794 kb on + strand, within BACOVA_02150 at 487.854 kb on + strand at 487.860 kb on - strand at 487.861 kb on + strand at 487.862 kb on - strand at 487.862 kb on - strand at 487.872 kb on + strand at 487.878 kb on + strand at 487.879 kb on - strand at 487.880 kb on + strand at 487.880 kb on + strand at 487.880 kb on + strand at 487.881 kb on - strand at 487.881 kb on - strand at 487.881 kb on - strand at 487.881 kb on - strand at 487.882 kb on + strand at 487.882 kb on + strand at 487.900 kb on + strand at 487.900 kb on + strand at 487.912 kb on + strand at 487.913 kb on - strand at 487.913 kb on - strand at 487.923 kb on - strand at 487.929 kb on - strand at 487.935 kb on + strand at 487.938 kb on + strand at 487.941 kb on + strand at 487.942 kb on - strand at 487.942 kb on - strand at 487.944 kb on + strand at 487.945 kb on - strand at 487.947 kb on + strand at 487.951 kb on + strand at 487.977 kb on - strand at 487.986 kb on + strand at 487.991 kb on + strand at 487.995 kb on + strand at 488.000 kb on + strand at 488.001 kb on - strand at 488.022 kb on - strand at 488.026 kb on - strand at 488.055 kb on - strand at 488.074 kb on + strand at 488.087 kb on - strand at 488.113 kb on - strand at 488.113 kb on - strand at 488.130 kb on - strand at 488.132 kb on - strand at 488.175 kb on + strand at 488.193 kb on + strand at 488.215 kb on - strand at 488.275 kb on + strand, within BACOVA_02151 at 488.275 kb on + strand, within BACOVA_02151 at 488.275 kb on + strand, within BACOVA_02151 at 488.276 kb on - strand, within BACOVA_02151 at 488.277 kb on + strand, within BACOVA_02151 at 488.277 kb on + strand, within BACOVA_02151 at 488.277 kb on + strand, within BACOVA_02151 at 488.328 kb on - strand, within BACOVA_02151 at 488.359 kb on - strand, within BACOVA_02151 at 488.391 kb on - strand, within BACOVA_02151 at 488.407 kb on - strand, within BACOVA_02151 at 488.407 kb on - strand, within BACOVA_02151 at 488.418 kb on - strand, within BACOVA_02151 at 488.429 kb on + strand at 488.430 kb on - strand at 488.449 kb on + strand at 488.516 kb on + strand at 488.524 kb on - strand at 488.527 kb on - strand at 488.561 kb on - strand at 488.563 kb on - strand at 488.567 kb on + strand at 488.587 kb on + strand at 488.588 kb on - strand at 488.588 kb on - strand at 488.591 kb on + strand at 488.591 kb on + strand at 488.592 kb on - strand at 488.592 kb on - strand at 488.592 kb on - strand at 488.592 kb on - strand at 488.608 kb on + strand at 488.618 kb on + strand at 488.618 kb on + strand at 488.619 kb on - strand at 488.619 kb on - strand at 488.623 kb on + strand at 488.627 kb on + strand at 488.628 kb on - strand at 488.628 kb on - strand at 488.628 kb on - strand at 488.628 kb on - strand at 488.653 kb on + strand at 488.653 kb on + strand at 488.654 kb on - strand at 488.654 kb on - strand at 488.654 kb on - strand at 488.654 kb on - strand at 488.654 kb on - strand at 488.701 kb on + strand at 488.723 kb on - strand at 488.728 kb on - strand at 488.728 kb on - strand at 488.734 kb on + strand, within BACOVA_02152 at 488.740 kb on + strand, within BACOVA_02152 at 488.740 kb on + strand, within BACOVA_02152 at 488.741 kb on - strand, within BACOVA_02152 at 488.743 kb on - strand, within BACOVA_02152 at 488.745 kb on + strand, within BACOVA_02152 at 488.746 kb on - strand, within BACOVA_02152 at 488.746 kb on - strand, within BACOVA_02152 at 488.758 kb on + strand, within BACOVA_02152 at 488.759 kb on - strand, within BACOVA_02152 at 488.778 kb on + strand, within BACOVA_02152 at 488.779 kb on - strand, within BACOVA_02152 at 488.779 kb on - strand, within BACOVA_02152 at 488.779 kb on - strand, within BACOVA_02152 at 488.779 kb on - strand, within BACOVA_02152 at 488.780 kb on + strand, within BACOVA_02152 at 488.780 kb on + strand, within BACOVA_02152 at 488.781 kb on - strand, within BACOVA_02152 at 488.781 kb on - strand, within BACOVA_02152 at 488.781 kb on - strand, within BACOVA_02152 at 488.783 kb on + strand, within BACOVA_02152 at 488.791 kb on - strand, within BACOVA_02152 at 488.802 kb on - strand, within BACOVA_02152 at 488.803 kb on + strand, within BACOVA_02152 at 488.803 kb on + strand, within BACOVA_02152 at 488.806 kb on + strand, within BACOVA_02152 at 488.806 kb on + strand, within BACOVA_02152 at 488.806 kb on + strand, within BACOVA_02152 at 488.808 kb on + strand, within BACOVA_02152 at 488.810 kb on + strand, within BACOVA_02152 at 488.820 kb on - strand, within BACOVA_02152 at 488.826 kb on - strand, within BACOVA_02152 at 488.826 kb on - strand, within BACOVA_02152 at 488.846 kb on - strand, within BACOVA_02152 at 488.848 kb on + strand, within BACOVA_02152 at 488.861 kb on + strand, within BACOVA_02152 at 488.862 kb on - strand, within BACOVA_02152 at 488.862 kb on - strand, within BACOVA_02152
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mM (C) remove 486,628 + BACOVA_02146 0.54 +0.4 486,655 + BACOVA_02146 0.71 -0.2 486,656 - BACOVA_02146 0.72 -1.0 486,671 - BACOVA_02146 0.81 -0.5 486,671 - BACOVA_02146 0.81 -0.5 486,675 + BACOVA_02146 0.84 -1.6 486,694 - +0.2 486,696 + -0.8 486,696 + +1.8 486,696 + -0.1 486,698 + -1.7 486,698 + +0.7 486,711 + +0.1 486,712 - +0.8 486,733 + +0.5 486,733 + +0.2 486,736 + -0.9 486,741 - +1.1 486,781 + BACOVA_02147 0.17 -1.2 486,782 - BACOVA_02147 0.18 -0.6 486,784 + BACOVA_02147 0.19 +1.3 486,784 + BACOVA_02147 0.19 +0.0 486,787 + BACOVA_02147 0.20 -0.9 486,820 + BACOVA_02147 0.34 -1.1 486,837 - BACOVA_02147 0.42 -1.7 486,839 + BACOVA_02147 0.42 -0.4 486,839 + BACOVA_02147 0.42 -1.2 486,839 + BACOVA_02147 0.42 -0.7 486,840 - BACOVA_02147 0.43 -1.2 486,853 + BACOVA_02147 0.48 +2.0 486,853 + BACOVA_02147 0.48 +0.3 486,888 - BACOVA_02147 0.64 -0.7 486,896 + BACOVA_02147 0.67 +0.2 486,899 - BACOVA_02147 0.68 -1.3 486,910 + BACOVA_02147 0.73 -1.9 486,923 - BACOVA_02147 0.79 -0.9 486,923 - BACOVA_02147 0.79 -0.9 486,923 - BACOVA_02147 0.79 +0.8 486,935 - BACOVA_02147 0.84 +0.4 486,944 + BACOVA_02147 0.88 -1.7 486,945 - BACOVA_02147 0.88 +1.8 486,945 - BACOVA_02147 0.88 -0.3 486,949 + +0.3 486,950 - +0.1 486,969 + -0.4 486,970 - +1.8 486,983 + +0.4 486,989 - -0.2 487,000 - -0.1 487,005 - -0.0 487,009 - -0.1 487,042 - BACOVA_02148 0.18 +1.2 487,044 + BACOVA_02148 0.19 +0.6 487,097 + BACOVA_02148 0.48 +0.1 487,121 + BACOVA_02148 0.61 -0.0 487,121 + BACOVA_02148 0.61 -0.8 487,122 - BACOVA_02148 0.62 -0.9 487,122 - BACOVA_02148 0.62 -1.4 487,125 + BACOVA_02148 0.63 -0.3 487,144 - BACOVA_02148 0.74 -2.0 487,144 - BACOVA_02148 0.74 -0.1 487,144 - BACOVA_02148 0.74 +0.4 487,149 - BACOVA_02148 0.77 +0.8 487,195 + -0.3 487,196 - -0.5 487,199 - +0.1 487,199 - +0.1 487,199 - +0.1 487,199 - +0.8 487,209 + -0.2 487,227 + +1.4 487,251 - -1.9 487,257 - +1.1 487,257 - -1.2 487,263 - -0.5 487,263 - +0.7 487,271 + -0.0 487,301 + -0.9 487,302 - -0.6 487,302 - -1.4 487,302 - -0.6 487,312 - BACOVA_02149 0.14 -0.1 487,315 - BACOVA_02149 0.16 +0.0 487,315 - BACOVA_02149 0.16 +0.1 487,338 + BACOVA_02149 0.26 -2.2 487,386 + BACOVA_02149 0.47 +0.8 487,396 + BACOVA_02149 0.52 -0.8 487,406 - BACOVA_02149 0.56 -0.4 487,406 - BACOVA_02149 0.56 -1.0 487,456 + BACOVA_02149 0.78 +1.0 487,545 + +0.3 487,563 + +0.1 487,564 - -0.4 487,564 - +0.2 487,564 - -0.2 487,573 + -2.3 487,573 + -0.5 487,574 - -0.8 487,574 - +0.7 487,576 + -0.0 487,576 + +0.7 487,578 + -0.2 487,578 + -0.5 487,587 + +0.7 487,588 - +0.2 487,588 - +0.3 487,588 - -0.2 487,648 + BACOVA_02150 0.22 -0.6 487,649 - BACOVA_02150 0.22 +0.4 487,680 - BACOVA_02150 0.33 -0.5 487,680 - BACOVA_02150 0.33 -1.3 487,680 - BACOVA_02150 0.33 +0.3 487,703 + BACOVA_02150 0.42 -0.1 487,703 + BACOVA_02150 0.42 -0.5 487,704 - BACOVA_02150 0.42 +0.8 487,704 - BACOVA_02150 0.42 -1.2 487,706 - BACOVA_02150 0.43 -0.2 487,706 - BACOVA_02150 0.43 -0.5 487,718 + BACOVA_02150 0.47 -0.7 487,722 + BACOVA_02150 0.49 +2.8 487,722 + BACOVA_02150 0.49 -0.3 487,722 + BACOVA_02150 0.49 -0.4 487,724 + BACOVA_02150 0.49 +0.4 487,724 + BACOVA_02150 0.49 -0.7 487,741 + BACOVA_02150 0.55 +2.2 487,742 - BACOVA_02150 0.56 +1.4 487,753 - BACOVA_02150 0.60 +0.8 487,753 - BACOVA_02150 0.60 +0.1 487,784 + BACOVA_02150 0.71 +0.4 487,785 - BACOVA_02150 0.71 +1.3 487,794 + BACOVA_02150 0.75 +1.1 487,854 + +0.6 487,860 - -3.0 487,861 + -0.5 487,862 - +0.2 487,862 - -0.1 487,872 + +0.1 487,878 + -0.9 487,879 - +0.2 487,880 + -0.5 487,880 + +1.4 487,880 + +1.2 487,881 - +1.4 487,881 - -1.5 487,881 - -1.0 487,881 - -1.7 487,882 + -2.6 487,882 + +0.2 487,900 + -1.2 487,900 + -1.8 487,912 + +0.4 487,913 - +0.6 487,913 - -1.4 487,923 - +0.8 487,929 - -1.4 487,935 + +1.8 487,938 + +0.1 487,941 + -2.5 487,942 - +0.2 487,942 - -1.3 487,944 + +1.2 487,945 - +0.2 487,947 + -0.5 487,951 + +0.6 487,977 - +1.2 487,986 + +0.2 487,991 + +1.3 487,995 + +0.3 488,000 + -0.9 488,001 - +0.0 488,022 - +0.0 488,026 - +0.3 488,055 - +0.2 488,074 + -1.0 488,087 - -0.4 488,113 - -2.3 488,113 - -0.2 488,130 - +0.4 488,132 - +0.6 488,175 + -0.1 488,193 + +0.8 488,215 - -0.0 488,275 + BACOVA_02151 0.31 +1.3 488,275 + BACOVA_02151 0.31 -1.2 488,275 + BACOVA_02151 0.31 +0.5 488,276 - BACOVA_02151 0.32 -0.2 488,277 + BACOVA_02151 0.32 -0.5 488,277 + BACOVA_02151 0.32 +1.5 488,277 + BACOVA_02151 0.32 -1.4 488,328 - BACOVA_02151 0.52 +1.1 488,359 - BACOVA_02151 0.64 -1.5 488,391 - BACOVA_02151 0.76 -1.4 488,407 - BACOVA_02151 0.83 -0.0 488,407 - BACOVA_02151 0.83 -1.4 488,418 - BACOVA_02151 0.87 -0.8 488,429 + +0.7 488,430 - -1.0 488,449 + -0.3 488,516 + -2.2 488,524 - -1.4 488,527 - -0.3 488,561 - +1.4 488,563 - -1.4 488,567 + +1.1 488,587 + +0.6 488,588 - -0.5 488,588 - +1.3 488,591 + -0.4 488,591 + -1.0 488,592 - -1.1 488,592 - -0.5 488,592 - +0.2 488,592 - +2.2 488,608 + -0.6 488,618 + +0.2 488,618 + -0.4 488,619 - +0.8 488,619 - -0.4 488,623 + -1.3 488,627 + +0.1 488,628 - +0.4 488,628 - +0.3 488,628 - -2.4 488,628 - -0.2 488,653 + +0.7 488,653 + +0.8 488,654 - -0.4 488,654 - -1.0 488,654 - -1.1 488,654 - -1.4 488,654 - -0.7 488,701 + +0.9 488,723 - -0.6 488,728 - -1.0 488,728 - -1.3 488,734 + BACOVA_02152 0.10 +0.1 488,740 + BACOVA_02152 0.11 +0.6 488,740 + BACOVA_02152 0.11 -0.1 488,741 - BACOVA_02152 0.11 -1.8 488,743 - BACOVA_02152 0.11 -0.9 488,745 + BACOVA_02152 0.11 +0.1 488,746 - BACOVA_02152 0.11 -0.9 488,746 - BACOVA_02152 0.11 -1.0 488,758 + BACOVA_02152 0.12 -1.1 488,759 - BACOVA_02152 0.12 +0.4 488,778 + BACOVA_02152 0.13 -0.6 488,779 - BACOVA_02152 0.13 -0.3 488,779 - BACOVA_02152 0.13 -0.5 488,779 - BACOVA_02152 0.13 -1.7 488,779 - BACOVA_02152 0.13 -1.5 488,780 + BACOVA_02152 0.13 -0.0 488,780 + BACOVA_02152 0.13 -1.2 488,781 - BACOVA_02152 0.13 -1.3 488,781 - BACOVA_02152 0.13 +0.5 488,781 - BACOVA_02152 0.13 -0.2 488,783 + BACOVA_02152 0.13 +0.2 488,791 - BACOVA_02152 0.13 -1.0 488,802 - BACOVA_02152 0.14 -0.9 488,803 + BACOVA_02152 0.14 -1.0 488,803 + BACOVA_02152 0.14 -0.8 488,806 + BACOVA_02152 0.14 -0.3 488,806 + BACOVA_02152 0.14 +0.8 488,806 + BACOVA_02152 0.14 -0.6 488,808 + BACOVA_02152 0.14 -0.2 488,810 + BACOVA_02152 0.14 -0.8 488,820 - BACOVA_02152 0.15 -0.2 488,826 - BACOVA_02152 0.15 +0.1 488,826 - BACOVA_02152 0.15 -0.4 488,846 - BACOVA_02152 0.16 -0.5 488,848 + BACOVA_02152 0.16 -1.5 488,861 + BACOVA_02152 0.17 -0.7 488,862 - BACOVA_02152 0.17 -0.8 488,862 - BACOVA_02152 0.17 +0.8
Or see this region's nucleotide sequence