Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01523

Experiment: NAG 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01522 and BACOVA_01523 are separated by 371 nucleotidesBACOVA_01523 and BACOVA_01524 are separated by 158 nucleotidesBACOVA_01524 and BACOVA_01525 are separated by 9 nucleotidesBACOVA_01525 and BACOVA_01526 overlap by 7 nucleotides BACOVA_01522: BACOVA_01522 - oxidoreductase, 2-nitropropane dioxygenase family protein, at 23,781 to 24,854 _01522 BACOVA_01523: BACOVA_01523 - hypothetical protein, at 25,226 to 25,525 _01523 BACOVA_01524: BACOVA_01524 - hypothetical protein, at 25,684 to 25,830 _01524 BACOVA_01525: BACOVA_01525 - uracil-DNA glycosylase, at 25,840 to 26,502 _01525 BACOVA_01526: BACOVA_01526 - transcriptional regulator, LuxR family, at 26,496 to 27,323 _01526 Position (kb) 25 26Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 24.267 kb on - strand, within BACOVA_01522at 24.267 kb on - strand, within BACOVA_01522at 24.285 kb on + strand, within BACOVA_01522at 24.285 kb on + strand, within BACOVA_01522at 24.316 kb on + strand, within BACOVA_01522at 24.330 kb on + strand, within BACOVA_01522at 24.330 kb on + strand, within BACOVA_01522at 24.331 kb on - strand, within BACOVA_01522at 24.351 kb on + strand, within BACOVA_01522at 24.352 kb on - strand, within BACOVA_01522at 24.400 kb on + strand, within BACOVA_01522at 24.400 kb on + strand, within BACOVA_01522at 24.405 kb on - strand, within BACOVA_01522at 24.405 kb on - strand, within BACOVA_01522at 24.406 kb on + strand, within BACOVA_01522at 24.456 kb on + strand, within BACOVA_01522at 24.456 kb on + strand, within BACOVA_01522at 24.456 kb on + strand, within BACOVA_01522at 24.457 kb on - strand, within BACOVA_01522at 24.457 kb on - strand, within BACOVA_01522at 24.468 kb on + strand, within BACOVA_01522at 24.468 kb on + strand, within BACOVA_01522at 24.469 kb on - strand, within BACOVA_01522at 24.480 kb on - strand, within BACOVA_01522at 24.497 kb on - strand, within BACOVA_01522at 24.606 kb on + strand, within BACOVA_01522at 24.614 kb on + strand, within BACOVA_01522at 24.617 kb on + strand, within BACOVA_01522at 24.618 kb on - strand, within BACOVA_01522at 24.682 kb on + strand, within BACOVA_01522at 24.705 kb on + strand, within BACOVA_01522at 24.705 kb on + strand, within BACOVA_01522at 24.706 kb on - strand, within BACOVA_01522at 24.706 kb on - strand, within BACOVA_01522at 24.729 kb on + strand, within BACOVA_01522at 24.730 kb on - strand, within BACOVA_01522at 24.730 kb on - strand, within BACOVA_01522at 24.731 kb on + strand, within BACOVA_01522at 24.731 kb on + strand, within BACOVA_01522at 24.731 kb on + strand, within BACOVA_01522at 24.732 kb on + strand, within BACOVA_01522at 24.738 kb on + strand, within BACOVA_01522at 24.785 kb on + strandat 24.786 kb on - strandat 24.790 kb on - strandat 24.790 kb on - strandat 24.807 kb on + strandat 24.808 kb on - strandat 24.810 kb on + strandat 24.854 kb on + strandat 24.889 kb on + strandat 24.889 kb on + strandat 24.943 kb on + strandat 24.961 kb on + strandat 24.969 kb on + strandat 24.977 kb on + strandat 25.006 kb on - strandat 25.009 kb on - strandat 25.023 kb on + strandat 25.023 kb on + strandat 25.055 kb on + strandat 25.056 kb on - strandat 25.059 kb on + strandat 25.068 kb on + strandat 25.103 kb on + strandat 25.109 kb on + strandat 25.176 kb on - strandat 25.180 kb on + strandat 25.200 kb on + strandat 25.200 kb on + strandat 25.201 kb on - strandat 25.201 kb on - strandat 25.203 kb on + strandat 25.203 kb on + strandat 25.227 kb on + strandat 25.228 kb on - strandat 25.228 kb on - strandat 25.228 kb on - strandat 25.228 kb on - strandat 25.248 kb on + strandat 25.249 kb on - strandat 25.385 kb on + strand, within BACOVA_01523at 25.385 kb on + strand, within BACOVA_01523at 25.385 kb on + strand, within BACOVA_01523at 25.386 kb on - strand, within BACOVA_01523at 25.386 kb on - strand, within BACOVA_01523at 25.435 kb on + strand, within BACOVA_01523at 25.467 kb on - strand, within BACOVA_01523at 25.503 kb on - strandat 25.573 kb on + strandat 25.596 kb on + strandat 25.597 kb on - strandat 25.617 kb on + strandat 25.617 kb on + strandat 25.618 kb on - strandat 25.620 kb on - strandat 25.620 kb on - strandat 25.624 kb on + strandat 25.676 kb on + strandat 25.685 kb on + strandat 25.685 kb on + strandat 25.685 kb on + strandat 25.686 kb on - strandat 25.688 kb on - strandat 25.719 kb on + strand, within BACOVA_01524at 25.747 kb on - strand, within BACOVA_01524at 25.760 kb on - strand, within BACOVA_01524at 25.795 kb on + strand, within BACOVA_01524at 25.796 kb on - strand, within BACOVA_01524at 25.796 kb on - strand, within BACOVA_01524at 25.798 kb on + strand, within BACOVA_01524at 25.798 kb on + strand, within BACOVA_01524at 25.798 kb on + strand, within BACOVA_01524at 25.798 kb on + strand, within BACOVA_01524at 25.798 kb on + strand, within BACOVA_01524at 25.799 kb on - strand, within BACOVA_01524at 25.799 kb on - strand, within BACOVA_01524at 25.804 kb on + strand, within BACOVA_01524at 25.805 kb on - strand, within BACOVA_01524at 25.820 kb on + strandat 25.820 kb on + strandat 25.820 kb on + strandat 25.821 kb on - strandat 25.821 kb on - strandat 25.839 kb on + strandat 25.937 kb on - strand, within BACOVA_01525at 25.982 kb on + strand, within BACOVA_01525at 25.983 kb on - strand, within BACOVA_01525at 25.983 kb on - strand, within BACOVA_01525at 26.009 kb on + strand, within BACOVA_01525at 26.015 kb on + strand, within BACOVA_01525at 26.016 kb on - strand, within BACOVA_01525at 26.056 kb on + strand, within BACOVA_01525at 26.059 kb on + strand, within BACOVA_01525at 26.090 kb on + strand, within BACOVA_01525at 26.108 kb on + strand, within BACOVA_01525at 26.109 kb on - strand, within BACOVA_01525at 26.129 kb on + strand, within BACOVA_01525at 26.130 kb on - strand, within BACOVA_01525at 26.217 kb on + strand, within BACOVA_01525at 26.223 kb on - strand, within BACOVA_01525at 26.253 kb on + strand, within BACOVA_01525at 26.322 kb on + strand, within BACOVA_01525at 26.322 kb on + strand, within BACOVA_01525at 26.323 kb on - strand, within BACOVA_01525at 26.323 kb on - strand, within BACOVA_01525at 26.339 kb on - strand, within BACOVA_01525at 26.363 kb on + strand, within BACOVA_01525at 26.364 kb on - strand, within BACOVA_01525at 26.368 kb on - strand, within BACOVA_01525at 26.368 kb on - strand, within BACOVA_01525at 26.368 kb on - strand, within BACOVA_01525at 26.388 kb on - strand, within BACOVA_01525at 26.422 kb on + strand, within BACOVA_01525at 26.423 kb on - strand, within BACOVA_01525at 26.472 kb on + strandat 26.472 kb on + strandat 26.476 kb on - strandat 26.500 kb on + strandat 26.505 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mM (C)
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24,267 - BACOVA_01522 0.45 -0.5
24,267 - BACOVA_01522 0.45 -0.0
24,285 + BACOVA_01522 0.47 +0.5
24,285 + BACOVA_01522 0.47 +0.4
24,316 + BACOVA_01522 0.50 -0.7
24,330 + BACOVA_01522 0.51 +0.9
24,330 + BACOVA_01522 0.51 -0.8
24,331 - BACOVA_01522 0.51 -1.2
24,351 + BACOVA_01522 0.53 -1.0
24,352 - BACOVA_01522 0.53 -0.3
24,400 + BACOVA_01522 0.58 +0.5
24,400 + BACOVA_01522 0.58 -2.2
24,405 - BACOVA_01522 0.58 -0.2
24,405 - BACOVA_01522 0.58 -0.5
24,406 + BACOVA_01522 0.58 -1.0
24,456 + BACOVA_01522 0.63 +0.3
24,456 + BACOVA_01522 0.63 +0.0
24,456 + BACOVA_01522 0.63 -0.8
24,457 - BACOVA_01522 0.63 -1.4
24,457 - BACOVA_01522 0.63 -0.2
24,468 + BACOVA_01522 0.64 +0.5
24,468 + BACOVA_01522 0.64 +0.0
24,469 - BACOVA_01522 0.64 -0.4
24,480 - BACOVA_01522 0.65 +1.4
24,497 - BACOVA_01522 0.67 +0.0
24,606 + BACOVA_01522 0.77 +0.8
24,614 + BACOVA_01522 0.78 +1.2
24,617 + BACOVA_01522 0.78 +0.5
24,618 - BACOVA_01522 0.78 +0.1
24,682 + BACOVA_01522 0.84 -0.2
24,705 + BACOVA_01522 0.86 +0.8
24,705 + BACOVA_01522 0.86 -1.2
24,706 - BACOVA_01522 0.86 +2.4
24,706 - BACOVA_01522 0.86 +0.2
24,729 + BACOVA_01522 0.88 -0.7
24,730 - BACOVA_01522 0.88 +1.0
24,730 - BACOVA_01522 0.88 -0.7
24,731 + BACOVA_01522 0.88 +0.3
24,731 + BACOVA_01522 0.88 -0.3
24,731 + BACOVA_01522 0.88 -0.0
24,732 + BACOVA_01522 0.89 -1.5
24,738 + BACOVA_01522 0.89 -0.4
24,785 + +0.7
24,786 - -0.4
24,790 - -0.6
24,790 - +0.5
24,807 + -0.5
24,808 - +0.1
24,810 + -1.3
24,854 + -1.5
24,889 + +2.4
24,889 + -0.1
24,943 + -0.3
24,961 + -0.1
24,969 + -0.7
24,977 + -2.3
25,006 - +0.6
25,009 - +0.7
25,023 + +0.6
25,023 + +0.4
25,055 + +0.2
25,056 - -0.5
25,059 + -0.8
25,068 + -0.6
25,103 + -0.2
25,109 + -0.7
25,176 - +0.2
25,180 + +0.3
25,200 + -0.2
25,200 + -0.2
25,201 - -1.2
25,201 - +0.2
25,203 + -1.7
25,203 + -0.4
25,227 + -0.2
25,228 - +0.2
25,228 - -1.2
25,228 - -0.2
25,228 - -0.1
25,248 + -0.7
25,249 - -1.2
25,385 + BACOVA_01523 0.53 +0.1
25,385 + BACOVA_01523 0.53 +0.4
25,385 + BACOVA_01523 0.53 +0.6
25,386 - BACOVA_01523 0.53 -0.4
25,386 - BACOVA_01523 0.53 -0.3
25,435 + BACOVA_01523 0.70 +0.0
25,467 - BACOVA_01523 0.80 -0.1
25,503 - -0.5
25,573 + +0.2
25,596 + +0.5
25,597 - -0.5
25,617 + +0.4
25,617 + -0.3
25,618 - -1.5
25,620 - +0.5
25,620 - -0.4
25,624 + -0.1
25,676 + +0.0
25,685 + -0.6
25,685 + +0.7
25,685 + +0.1
25,686 - -0.2
25,688 - -2.5
25,719 + BACOVA_01524 0.24 -0.9
25,747 - BACOVA_01524 0.43 +0.5
25,760 - BACOVA_01524 0.52 +0.4
25,795 + BACOVA_01524 0.76 -0.5
25,796 - BACOVA_01524 0.76 -0.5
25,796 - BACOVA_01524 0.76 -0.3
25,798 + BACOVA_01524 0.78 -1.0
25,798 + BACOVA_01524 0.78 -0.2
25,798 + BACOVA_01524 0.78 +0.2
25,798 + BACOVA_01524 0.78 -0.8
25,798 + BACOVA_01524 0.78 -0.5
25,799 - BACOVA_01524 0.78 -0.5
25,799 - BACOVA_01524 0.78 -0.2
25,804 + BACOVA_01524 0.82 -0.5
25,805 - BACOVA_01524 0.82 -1.0
25,820 + -0.5
25,820 + -0.1
25,820 + -0.4
25,821 - -0.5
25,821 - -1.5
25,839 + -1.3
25,937 - BACOVA_01525 0.15 +0.0
25,982 + BACOVA_01525 0.21 +2.4
25,983 - BACOVA_01525 0.22 -1.3
25,983 - BACOVA_01525 0.22 -0.6
26,009 + BACOVA_01525 0.25 -1.2
26,015 + BACOVA_01525 0.26 -0.5
26,016 - BACOVA_01525 0.27 +0.6
26,056 + BACOVA_01525 0.33 -0.2
26,059 + BACOVA_01525 0.33 -0.3
26,090 + BACOVA_01525 0.38 +0.8
26,108 + BACOVA_01525 0.40 -0.6
26,109 - BACOVA_01525 0.41 -2.9
26,129 + BACOVA_01525 0.44 -1.1
26,130 - BACOVA_01525 0.44 -0.8
26,217 + BACOVA_01525 0.57 -0.5
26,223 - BACOVA_01525 0.58 +0.4
26,253 + BACOVA_01525 0.62 -1.5
26,322 + BACOVA_01525 0.73 +0.3
26,322 + BACOVA_01525 0.73 -0.2
26,323 - BACOVA_01525 0.73 -0.9
26,323 - BACOVA_01525 0.73 -0.7
26,339 - BACOVA_01525 0.75 -0.3
26,363 + BACOVA_01525 0.79 +0.2
26,364 - BACOVA_01525 0.79 -0.2
26,368 - BACOVA_01525 0.80 +0.4
26,368 - BACOVA_01525 0.80 -0.0
26,368 - BACOVA_01525 0.80 +0.6
26,388 - BACOVA_01525 0.83 -0.5
26,422 + BACOVA_01525 0.88 -0.3
26,423 - BACOVA_01525 0.88 +0.0
26,472 + +0.1
26,472 + +0.2
26,476 - -0.6
26,500 + -0.6
26,505 - -0.0

Or see this region's nucleotide sequence