Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05480

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05479 and BACOVA_05480 are separated by 50 nucleotidesBACOVA_05480 and BACOVA_05481 are separated by 17 nucleotides BACOVA_05479: BACOVA_05479 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 978,558 to 982,619 _05479 BACOVA_05480: BACOVA_05480 - hypothetical protein, at 982,670 to 982,813 _05480 BACOVA_05481: BACOVA_05481 - pyridoxal-phosphate dependent TrpB-like enzyme, at 982,831 to 984,201 _05481 Position (kb) 982 983Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 981.677 kb on + strand, within BACOVA_05479at 981.787 kb on - strand, within BACOVA_05479at 981.829 kb on + strand, within BACOVA_05479at 981.830 kb on - strand, within BACOVA_05479at 981.830 kb on - strand, within BACOVA_05479at 981.931 kb on - strand, within BACOVA_05479at 981.937 kb on - strand, within BACOVA_05479at 981.937 kb on - strand, within BACOVA_05479at 981.937 kb on - strand, within BACOVA_05479at 981.938 kb on + strand, within BACOVA_05479at 981.939 kb on - strand, within BACOVA_05479at 982.027 kb on + strand, within BACOVA_05479at 982.033 kb on + strand, within BACOVA_05479at 982.061 kb on - strand, within BACOVA_05479at 982.064 kb on + strand, within BACOVA_05479at 982.064 kb on + strand, within BACOVA_05479at 982.067 kb on + strand, within BACOVA_05479at 982.067 kb on + strand, within BACOVA_05479at 982.081 kb on + strand, within BACOVA_05479at 982.097 kb on + strand, within BACOVA_05479at 982.097 kb on + strand, within BACOVA_05479at 982.098 kb on - strand, within BACOVA_05479at 982.109 kb on + strand, within BACOVA_05479at 982.182 kb on + strand, within BACOVA_05479at 982.184 kb on + strand, within BACOVA_05479at 982.184 kb on + strand, within BACOVA_05479at 982.184 kb on + strand, within BACOVA_05479at 982.185 kb on - strand, within BACOVA_05479at 982.185 kb on - strand, within BACOVA_05479at 982.185 kb on - strand, within BACOVA_05479at 982.285 kb on + strandat 982.286 kb on - strandat 982.362 kb on - strandat 982.367 kb on + strandat 982.367 kb on + strandat 982.389 kb on - strandat 982.396 kb on + strandat 982.397 kb on - strandat 982.421 kb on - strandat 982.439 kb on - strandat 982.455 kb on - strandat 982.455 kb on - strandat 982.457 kb on + strandat 982.458 kb on - strandat 982.522 kb on + strandat 982.575 kb on - strandat 982.575 kb on - strandat 982.575 kb on - strandat 982.575 kb on - strandat 982.578 kb on + strandat 982.607 kb on + strandat 982.620 kb on + strandat 982.623 kb on + strandat 982.624 kb on - strandat 982.637 kb on - strandat 982.654 kb on + strandat 982.668 kb on - strandat 982.668 kb on - strandat 982.669 kb on + strandat 982.669 kb on + strandat 982.670 kb on - strandat 982.670 kb on - strandat 982.677 kb on + strandat 982.677 kb on + strandat 982.677 kb on + strandat 982.695 kb on + strand, within BACOVA_05480at 982.702 kb on - strand, within BACOVA_05480at 982.711 kb on - strand, within BACOVA_05480at 982.735 kb on + strand, within BACOVA_05480at 982.748 kb on + strand, within BACOVA_05480at 982.774 kb on + strand, within BACOVA_05480at 982.774 kb on + strand, within BACOVA_05480at 982.775 kb on - strand, within BACOVA_05480at 982.820 kb on + strandat 982.830 kb on - strandat 982.841 kb on - strandat 982.850 kb on - strandat 982.859 kb on - strandat 982.873 kb on - strandat 982.891 kb on - strandat 982.892 kb on + strandat 982.892 kb on + strandat 982.893 kb on - strandat 982.917 kb on - strandat 982.917 kb on - strandat 982.917 kb on - strandat 983.058 kb on + strand, within BACOVA_05481at 983.058 kb on + strand, within BACOVA_05481at 983.110 kb on + strand, within BACOVA_05481at 983.110 kb on + strand, within BACOVA_05481at 983.111 kb on - strand, within BACOVA_05481at 983.111 kb on - strand, within BACOVA_05481at 983.112 kb on + strand, within BACOVA_05481at 983.117 kb on - strand, within BACOVA_05481at 983.159 kb on - strand, within BACOVA_05481at 983.159 kb on - strand, within BACOVA_05481at 983.380 kb on - strand, within BACOVA_05481at 983.500 kb on - strand, within BACOVA_05481at 983.520 kb on - strand, within BACOVA_05481at 983.530 kb on - strand, within BACOVA_05481at 983.565 kb on + strand, within BACOVA_05481at 983.611 kb on - strand, within BACOVA_05481at 983.634 kb on + strand, within BACOVA_05481at 983.635 kb on - strand, within BACOVA_05481at 983.635 kb on - strand, within BACOVA_05481at 983.635 kb on - strand, within BACOVA_05481at 983.702 kb on + strand, within BACOVA_05481

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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981,677 + BACOVA_05479 0.77 -1.0
981,787 - BACOVA_05479 0.79 +0.3
981,829 + BACOVA_05479 0.81 +0.6
981,830 - BACOVA_05479 0.81 +0.2
981,830 - BACOVA_05479 0.81 -1.7
981,931 - BACOVA_05479 0.83 +1.0
981,937 - BACOVA_05479 0.83 -0.4
981,937 - BACOVA_05479 0.83 -0.8
981,937 - BACOVA_05479 0.83 +0.5
981,938 + BACOVA_05479 0.83 +0.3
981,939 - BACOVA_05479 0.83 -0.7
982,027 + BACOVA_05479 0.85 +1.3
982,033 + BACOVA_05479 0.86 +0.2
982,061 - BACOVA_05479 0.86 -1.0
982,064 + BACOVA_05479 0.86 -0.7
982,064 + BACOVA_05479 0.86 +0.5
982,067 + BACOVA_05479 0.86 -1.8
982,067 + BACOVA_05479 0.86 -0.5
982,081 + BACOVA_05479 0.87 +0.9
982,097 + BACOVA_05479 0.87 +0.0
982,097 + BACOVA_05479 0.87 +0.3
982,098 - BACOVA_05479 0.87 -0.9
982,109 + BACOVA_05479 0.87 +1.3
982,182 + BACOVA_05479 0.89 -0.5
982,184 + BACOVA_05479 0.89 -0.4
982,184 + BACOVA_05479 0.89 +1.3
982,184 + BACOVA_05479 0.89 -0.7
982,185 - BACOVA_05479 0.89 -0.1
982,185 - BACOVA_05479 0.89 +0.4
982,185 - BACOVA_05479 0.89 -0.5
982,285 + +0.5
982,286 - -1.7
982,362 - -0.5
982,367 + -1.2
982,367 + -0.5
982,389 - +1.9
982,396 + +1.5
982,397 - -0.5
982,421 - +2.9
982,439 - -1.3
982,455 - -0.6
982,455 - -0.5
982,457 + -1.0
982,458 - -1.4
982,522 + +0.3
982,575 - -1.4
982,575 - +0.1
982,575 - -0.2
982,575 - +0.9
982,578 + +0.7
982,607 + -0.4
982,620 + -0.1
982,623 + -0.3
982,624 - +0.8
982,637 - +0.2
982,654 + +0.6
982,668 - +6.1
982,668 - +0.2
982,669 + -0.1
982,669 + -1.4
982,670 - +0.3
982,670 - -1.0
982,677 + +1.3
982,677 + -0.5
982,677 + +0.0
982,695 + BACOVA_05480 0.17 +0.0
982,702 - BACOVA_05480 0.22 +0.5
982,711 - BACOVA_05480 0.28 +0.3
982,735 + BACOVA_05480 0.45 -0.5
982,748 + BACOVA_05480 0.54 -1.7
982,774 + BACOVA_05480 0.72 +1.9
982,774 + BACOVA_05480 0.72 -0.2
982,775 - BACOVA_05480 0.73 -0.7
982,820 + -0.8
982,830 - -0.7
982,841 - -1.0
982,850 - +0.3
982,859 - -0.0
982,873 - +0.3
982,891 - +0.2
982,892 + +1.3
982,892 + -0.5
982,893 - -0.2
982,917 - +0.2
982,917 - +0.6
982,917 - -0.3
983,058 + BACOVA_05481 0.17 +0.1
983,058 + BACOVA_05481 0.17 -1.5
983,110 + BACOVA_05481 0.20 -1.2
983,110 + BACOVA_05481 0.20 -0.8
983,111 - BACOVA_05481 0.20 -0.2
983,111 - BACOVA_05481 0.20 -0.4
983,112 + BACOVA_05481 0.20 -0.9
983,117 - BACOVA_05481 0.21 -0.2
983,159 - BACOVA_05481 0.24 -0.7
983,159 - BACOVA_05481 0.24 -0.4
983,380 - BACOVA_05481 0.40 +1.0
983,500 - BACOVA_05481 0.49 +0.0
983,520 - BACOVA_05481 0.50 -0.2
983,530 - BACOVA_05481 0.51 +0.9
983,565 + BACOVA_05481 0.54 +0.1
983,611 - BACOVA_05481 0.57 +0.1
983,634 + BACOVA_05481 0.59 +0.8
983,635 - BACOVA_05481 0.59 +0.3
983,635 - BACOVA_05481 0.59 -0.2
983,635 - BACOVA_05481 0.59 -0.6
983,702 + BACOVA_05481 0.64 -0.7

Or see this region's nucleotide sequence