Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02745 and BACOVA_02746 are separated by 150 nucleotides BACOVA_02746 and BACOVA_02747 are separated by 1 nucleotides BACOVA_02747 and BACOVA_02748 are separated by 121 nucleotides BACOVA_02748 and BACOVA_02749 are separated by 90 nucleotides BACOVA_02749 and BACOVA_02750 are separated by 12 nucleotides
BACOVA_02745: BACOVA_02745 - glycosyl hydrolase family 3 N-terminal domain protein, at 186,037 to 188,331
_02745
BACOVA_02746: BACOVA_02746 - hypothetical protein, at 188,482 to 188,673
_02746
BACOVA_02747: BACOVA_02747 - hypothetical protein, at 188,675 to 188,809
_02747
BACOVA_02748: BACOVA_02748 - hypothetical protein, at 188,931 to 190,328
_02748
BACOVA_02749: BACOVA_02749 - hypothetical protein, at 190,419 to 191,111
_02749
BACOVA_02750: BACOVA_02750 - hypothetical protein, at 191,124 to 192,314
_02750
Position (kb) 188
189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.936 kb on + strand, within BACOVA_02745 at 187.944 kb on - strand, within BACOVA_02745 at 187.991 kb on - strand, within BACOVA_02745 at 188.073 kb on - strand, within BACOVA_02745 at 188.073 kb on - strand, within BACOVA_02745 at 188.208 kb on + strand at 188.217 kb on - strand at 188.217 kb on - strand at 188.217 kb on - strand at 188.317 kb on - strand at 188.319 kb on + strand at 188.320 kb on - strand at 188.320 kb on - strand at 188.321 kb on + strand at 188.321 kb on + strand at 188.330 kb on - strand at 188.348 kb on - strand at 188.348 kb on - strand at 188.395 kb on + strand at 188.395 kb on + strand at 188.395 kb on + strand at 188.396 kb on - strand at 188.396 kb on - strand at 188.396 kb on - strand at 188.396 kb on - strand at 188.398 kb on - strand at 188.441 kb on + strand at 188.476 kb on + strand at 188.554 kb on - strand, within BACOVA_02746 at 188.554 kb on - strand, within BACOVA_02746 at 188.583 kb on - strand, within BACOVA_02746 at 188.584 kb on - strand, within BACOVA_02746 at 188.620 kb on + strand, within BACOVA_02746 at 188.632 kb on - strand, within BACOVA_02746 at 188.632 kb on - strand, within BACOVA_02746 at 188.692 kb on + strand, within BACOVA_02747 at 188.696 kb on + strand, within BACOVA_02747 at 188.717 kb on + strand, within BACOVA_02747 at 188.717 kb on + strand, within BACOVA_02747 at 188.727 kb on + strand, within BACOVA_02747 at 188.734 kb on - strand, within BACOVA_02747 at 188.781 kb on - strand, within BACOVA_02747 at 188.794 kb on - strand, within BACOVA_02747 at 188.857 kb on - strand at 188.857 kb on - strand at 188.896 kb on + strand at 188.896 kb on + strand at 188.897 kb on - strand at 188.903 kb on + strand at 188.903 kb on + strand at 188.904 kb on - strand at 188.904 kb on - strand at 188.906 kb on - strand at 188.994 kb on + strand at 188.994 kb on + strand at 188.999 kb on - strand at 189.005 kb on + strand at 189.008 kb on - strand at 189.013 kb on + strand at 189.014 kb on - strand at 189.030 kb on + strand at 189.047 kb on + strand at 189.048 kb on - strand at 189.054 kb on + strand at 189.055 kb on - strand at 189.057 kb on - strand at 189.057 kb on - strand at 189.082 kb on - strand, within BACOVA_02748 at 189.163 kb on + strand, within BACOVA_02748 at 189.164 kb on - strand, within BACOVA_02748 at 189.179 kb on + strand, within BACOVA_02748 at 189.180 kb on - strand, within BACOVA_02748 at 189.197 kb on + strand, within BACOVA_02748 at 189.236 kb on + strand, within BACOVA_02748 at 189.239 kb on - strand, within BACOVA_02748 at 189.245 kb on + strand, within BACOVA_02748 at 189.246 kb on - strand, within BACOVA_02748 at 189.248 kb on - strand, within BACOVA_02748 at 189.251 kb on + strand, within BACOVA_02748 at 189.251 kb on + strand, within BACOVA_02748 at 189.252 kb on - strand, within BACOVA_02748 at 189.252 kb on - strand, within BACOVA_02748 at 189.277 kb on + strand, within BACOVA_02748 at 189.278 kb on - strand, within BACOVA_02748 at 189.278 kb on - strand, within BACOVA_02748 at 189.373 kb on + strand, within BACOVA_02748 at 189.391 kb on - strand, within BACOVA_02748 at 189.396 kb on + strand, within BACOVA_02748 at 189.396 kb on + strand, within BACOVA_02748 at 189.437 kb on + strand, within BACOVA_02748 at 189.437 kb on + strand, within BACOVA_02748 at 189.454 kb on - strand, within BACOVA_02748 at 189.459 kb on + strand, within BACOVA_02748 at 189.463 kb on + strand, within BACOVA_02748 at 189.463 kb on + strand, within BACOVA_02748 at 189.466 kb on + strand, within BACOVA_02748 at 189.466 kb on + strand, within BACOVA_02748 at 189.467 kb on - strand, within BACOVA_02748 at 189.494 kb on + strand, within BACOVA_02748 at 189.497 kb on + strand, within BACOVA_02748 at 189.498 kb on - strand, within BACOVA_02748 at 189.581 kb on + strand, within BACOVA_02748 at 189.582 kb on - strand, within BACOVA_02748 at 189.624 kb on - strand, within BACOVA_02748 at 189.624 kb on - strand, within BACOVA_02748 at 189.626 kb on - strand, within BACOVA_02748 at 189.626 kb on - strand, within BACOVA_02748 at 189.626 kb on - strand, within BACOVA_02748 at 189.626 kb on - strand, within BACOVA_02748 at 189.626 kb on - strand, within BACOVA_02748 at 189.672 kb on + strand, within BACOVA_02748 at 189.674 kb on + strand, within BACOVA_02748 at 189.674 kb on + strand, within BACOVA_02748 at 189.801 kb on - strand, within BACOVA_02748 at 189.801 kb on - strand, within BACOVA_02748 at 189.801 kb on - strand, within BACOVA_02748 at 189.893 kb on + strand, within BACOVA_02748 at 189.893 kb on + strand, within BACOVA_02748 at 189.893 kb on + strand, within BACOVA_02748 at 189.894 kb on - strand, within BACOVA_02748 at 189.894 kb on - strand, within BACOVA_02748 at 189.894 kb on - strand, within BACOVA_02748 at 189.894 kb on - strand, within BACOVA_02748 at 189.895 kb on + strand, within BACOVA_02748 at 189.895 kb on + strand, within BACOVA_02748 at 189.931 kb on - strand, within BACOVA_02748 at 189.935 kb on - strand, within BACOVA_02748 at 189.946 kb on + strand, within BACOVA_02748 at 189.990 kb on - strand, within BACOVA_02748 at 189.992 kb on + strand, within BACOVA_02748 at 190.009 kb on - strand, within BACOVA_02748 at 190.038 kb on + strand, within BACOVA_02748 at 190.039 kb on - strand, within BACOVA_02748 at 190.071 kb on - strand, within BACOVA_02748 at 190.073 kb on + strand, within BACOVA_02748 at 190.073 kb on + strand, within BACOVA_02748 at 190.073 kb on + strand, within BACOVA_02748 at 190.074 kb on - strand, within BACOVA_02748 at 190.074 kb on - strand, within BACOVA_02748 at 190.075 kb on + strand, within BACOVA_02748 at 190.097 kb on + strand, within BACOVA_02748 at 190.098 kb on - strand, within BACOVA_02748 at 190.132 kb on - strand, within BACOVA_02748 at 190.132 kb on - strand, within BACOVA_02748 at 190.142 kb on + strand, within BACOVA_02748 at 190.142 kb on + strand, within BACOVA_02748 at 190.144 kb on + strand, within BACOVA_02748 at 190.175 kb on + strand, within BACOVA_02748 at 190.212 kb on + strand at 190.233 kb on + strand at 190.238 kb on + strand at 190.239 kb on - strand at 190.250 kb on + strand at 190.250 kb on + strand at 190.250 kb on + strand at 190.254 kb on - strand at 190.290 kb on - strand at 190.290 kb on - strand at 190.311 kb on + strand at 190.315 kb on - strand at 190.330 kb on + strand at 190.404 kb on + strand at 190.404 kb on + strand at 190.405 kb on - strand at 190.405 kb on - strand at 190.420 kb on + strand at 190.421 kb on - strand at 190.423 kb on - strand at 190.423 kb on - strand at 190.458 kb on + strand at 190.459 kb on - strand at 190.459 kb on - strand at 190.481 kb on - strand at 190.488 kb on - strand at 190.488 kb on - strand at 190.492 kb on + strand, within BACOVA_02749 at 190.493 kb on - strand, within BACOVA_02749 at 190.493 kb on - strand, within BACOVA_02749 at 190.517 kb on + strand, within BACOVA_02749 at 190.518 kb on - strand, within BACOVA_02749 at 190.553 kb on + strand, within BACOVA_02749 at 190.560 kb on - strand, within BACOVA_02749 at 190.592 kb on + strand, within BACOVA_02749 at 190.625 kb on + strand, within BACOVA_02749 at 190.628 kb on + strand, within BACOVA_02749 at 190.629 kb on - strand, within BACOVA_02749 at 190.659 kb on - strand, within BACOVA_02749 at 190.659 kb on - strand, within BACOVA_02749 at 190.660 kb on - strand, within BACOVA_02749 at 190.670 kb on + strand, within BACOVA_02749 at 190.708 kb on + strand, within BACOVA_02749 at 190.708 kb on + strand, within BACOVA_02749 at 190.720 kb on + strand, within BACOVA_02749 at 190.742 kb on - strand, within BACOVA_02749 at 190.763 kb on + strand, within BACOVA_02749 at 190.784 kb on + strand, within BACOVA_02749 at 190.791 kb on - strand, within BACOVA_02749 at 190.791 kb on - strand, within BACOVA_02749 at 190.808 kb on + strand, within BACOVA_02749 at 190.833 kb on + strand, within BACOVA_02749 at 190.848 kb on + strand, within BACOVA_02749 at 190.869 kb on - strand, within BACOVA_02749 at 190.905 kb on + strand, within BACOVA_02749 at 190.983 kb on - strand, within BACOVA_02749 at 191.002 kb on + strand, within BACOVA_02749 at 191.028 kb on + strand, within BACOVA_02749 at 191.028 kb on + strand, within BACOVA_02749 at 191.029 kb on - strand, within BACOVA_02749 at 191.030 kb on + strand, within BACOVA_02749 at 191.030 kb on + strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.038 kb on - strand, within BACOVA_02749 at 191.081 kb on + strand at 191.130 kb on - strand at 191.174 kb on + strand at 191.175 kb on - strand at 191.194 kb on - strand at 191.194 kb on - strand at 191.261 kb on + strand, within BACOVA_02750 at 191.261 kb on + strand, within BACOVA_02750 at 191.262 kb on - strand, within BACOVA_02750 at 191.262 kb on - strand, within BACOVA_02750 at 191.292 kb on + strand, within BACOVA_02750 at 191.299 kb on - strand, within BACOVA_02750
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 187,936 + BACOVA_02745 0.83 +0.2 187,944 - BACOVA_02745 0.83 -0.8 187,991 - BACOVA_02745 0.85 +0.3 188,073 - BACOVA_02745 0.89 -1.0 188,073 - BACOVA_02745 0.89 -0.0 188,208 + +0.0 188,217 - -1.3 188,217 - +0.0 188,217 - +0.2 188,317 - -1.1 188,319 + +0.3 188,320 - +0.5 188,320 - -0.3 188,321 + +1.5 188,321 + -1.1 188,330 - +0.4 188,348 - +0.0 188,348 - -0.8 188,395 + -0.8 188,395 + +2.2 188,395 + -1.2 188,396 - -0.8 188,396 - +0.7 188,396 - +0.2 188,396 - +0.2 188,398 - +0.5 188,441 + +1.7 188,476 + -0.1 188,554 - BACOVA_02746 0.38 -0.0 188,554 - BACOVA_02746 0.38 +0.2 188,583 - BACOVA_02746 0.53 -1.4 188,584 - BACOVA_02746 0.53 -1.3 188,620 + BACOVA_02746 0.72 -0.1 188,632 - BACOVA_02746 0.78 +0.9 188,632 - BACOVA_02746 0.78 -0.9 188,692 + BACOVA_02747 0.13 -0.3 188,696 + BACOVA_02747 0.16 -1.3 188,717 + BACOVA_02747 0.31 -2.1 188,717 + BACOVA_02747 0.31 -0.8 188,727 + BACOVA_02747 0.39 +0.2 188,734 - BACOVA_02747 0.44 -0.5 188,781 - BACOVA_02747 0.79 -0.6 188,794 - BACOVA_02747 0.88 -0.5 188,857 - -0.7 188,857 - +1.5 188,896 + -0.3 188,896 + +0.5 188,897 - +0.6 188,903 + -0.2 188,903 + +0.4 188,904 - -0.1 188,904 - +1.5 188,906 - -0.0 188,994 + -0.3 188,994 + +0.6 188,999 - +0.3 189,005 + +0.1 189,008 - +0.7 189,013 + +2.1 189,014 - -0.1 189,030 + +0.4 189,047 + -0.2 189,048 - -0.7 189,054 + -0.4 189,055 - +0.1 189,057 - +0.5 189,057 - +0.4 189,082 - BACOVA_02748 0.11 -0.1 189,163 + BACOVA_02748 0.17 +0.9 189,164 - BACOVA_02748 0.17 +0.2 189,179 + BACOVA_02748 0.18 -1.4 189,180 - BACOVA_02748 0.18 -1.1 189,197 + BACOVA_02748 0.19 +0.8 189,236 + BACOVA_02748 0.22 -1.8 189,239 - BACOVA_02748 0.22 -0.1 189,245 + BACOVA_02748 0.22 -0.7 189,246 - BACOVA_02748 0.23 +0.2 189,248 - BACOVA_02748 0.23 -0.8 189,251 + BACOVA_02748 0.23 -0.5 189,251 + BACOVA_02748 0.23 -0.1 189,252 - BACOVA_02748 0.23 +1.1 189,252 - BACOVA_02748 0.23 +0.7 189,277 + BACOVA_02748 0.25 +0.2 189,278 - BACOVA_02748 0.25 +0.1 189,278 - BACOVA_02748 0.25 +0.0 189,373 + BACOVA_02748 0.32 +0.1 189,391 - BACOVA_02748 0.33 +0.6 189,396 + BACOVA_02748 0.33 +0.7 189,396 + BACOVA_02748 0.33 -0.1 189,437 + BACOVA_02748 0.36 +0.3 189,437 + BACOVA_02748 0.36 -0.0 189,454 - BACOVA_02748 0.37 +0.2 189,459 + BACOVA_02748 0.38 -0.1 189,463 + BACOVA_02748 0.38 -0.3 189,463 + BACOVA_02748 0.38 -0.4 189,466 + BACOVA_02748 0.38 +0.7 189,466 + BACOVA_02748 0.38 -0.1 189,467 - BACOVA_02748 0.38 +0.9 189,494 + BACOVA_02748 0.40 -1.0 189,497 + BACOVA_02748 0.40 -0.1 189,498 - BACOVA_02748 0.41 +0.0 189,581 + BACOVA_02748 0.46 +0.9 189,582 - BACOVA_02748 0.47 +0.0 189,624 - BACOVA_02748 0.50 -0.9 189,624 - BACOVA_02748 0.50 +0.5 189,626 - BACOVA_02748 0.50 -1.1 189,626 - BACOVA_02748 0.50 -0.5 189,626 - BACOVA_02748 0.50 +1.2 189,626 - BACOVA_02748 0.50 -0.7 189,626 - BACOVA_02748 0.50 -1.0 189,672 + BACOVA_02748 0.53 -0.5 189,674 + BACOVA_02748 0.53 +1.8 189,674 + BACOVA_02748 0.53 -0.8 189,801 - BACOVA_02748 0.62 -1.3 189,801 - BACOVA_02748 0.62 -0.3 189,801 - BACOVA_02748 0.62 -0.5 189,893 + BACOVA_02748 0.69 +0.4 189,893 + BACOVA_02748 0.69 +0.3 189,893 + BACOVA_02748 0.69 +0.3 189,894 - BACOVA_02748 0.69 +0.0 189,894 - BACOVA_02748 0.69 +1.0 189,894 - BACOVA_02748 0.69 +0.5 189,894 - BACOVA_02748 0.69 -0.3 189,895 + BACOVA_02748 0.69 +0.6 189,895 + BACOVA_02748 0.69 -1.1 189,931 - BACOVA_02748 0.72 +0.0 189,935 - BACOVA_02748 0.72 +0.6 189,946 + BACOVA_02748 0.73 -0.4 189,990 - BACOVA_02748 0.76 -0.5 189,992 + BACOVA_02748 0.76 -0.1 190,009 - BACOVA_02748 0.77 -0.4 190,038 + BACOVA_02748 0.79 +2.5 190,039 - BACOVA_02748 0.79 +0.5 190,071 - BACOVA_02748 0.82 -0.8 190,073 + BACOVA_02748 0.82 -0.5 190,073 + BACOVA_02748 0.82 -0.9 190,073 + BACOVA_02748 0.82 -0.3 190,074 - BACOVA_02748 0.82 -1.1 190,074 - BACOVA_02748 0.82 +0.7 190,075 + BACOVA_02748 0.82 -0.3 190,097 + BACOVA_02748 0.83 -0.4 190,098 - BACOVA_02748 0.83 -0.8 190,132 - BACOVA_02748 0.86 -0.3 190,132 - BACOVA_02748 0.86 -0.3 190,142 + BACOVA_02748 0.87 +1.8 190,142 + BACOVA_02748 0.87 +0.7 190,144 + BACOVA_02748 0.87 -0.7 190,175 + BACOVA_02748 0.89 -0.4 190,212 + -0.1 190,233 + +1.5 190,238 + +0.3 190,239 - +1.2 190,250 + +0.1 190,250 + -0.5 190,250 + -0.2 190,254 - +0.6 190,290 - -1.3 190,290 - -0.6 190,311 + +0.2 190,315 - -0.5 190,330 + +0.3 190,404 + -0.2 190,404 + -0.6 190,405 - -1.3 190,405 - +0.2 190,420 + +0.3 190,421 - -0.1 190,423 - -0.1 190,423 - +0.7 190,458 + +1.1 190,459 - -0.1 190,459 - -0.2 190,481 - +0.0 190,488 - -0.6 190,488 - +0.7 190,492 + BACOVA_02749 0.11 +0.4 190,493 - BACOVA_02749 0.11 +1.1 190,493 - BACOVA_02749 0.11 +0.2 190,517 + BACOVA_02749 0.14 +1.2 190,518 - BACOVA_02749 0.14 -0.5 190,553 + BACOVA_02749 0.19 +1.5 190,560 - BACOVA_02749 0.20 -0.3 190,592 + BACOVA_02749 0.25 +0.0 190,625 + BACOVA_02749 0.30 -0.0 190,628 + BACOVA_02749 0.30 +2.1 190,629 - BACOVA_02749 0.30 -0.3 190,659 - BACOVA_02749 0.35 -0.1 190,659 - BACOVA_02749 0.35 -0.4 190,660 - BACOVA_02749 0.35 +0.0 190,670 + BACOVA_02749 0.36 +0.2 190,708 + BACOVA_02749 0.42 +0.2 190,708 + BACOVA_02749 0.42 +0.5 190,720 + BACOVA_02749 0.43 -2.8 190,742 - BACOVA_02749 0.47 +0.5 190,763 + BACOVA_02749 0.50 +0.3 190,784 + BACOVA_02749 0.53 +0.5 190,791 - BACOVA_02749 0.54 -0.7 190,791 - BACOVA_02749 0.54 +0.7 190,808 + BACOVA_02749 0.56 +1.9 190,833 + BACOVA_02749 0.60 -1.2 190,848 + BACOVA_02749 0.62 +0.3 190,869 - BACOVA_02749 0.65 +0.1 190,905 + BACOVA_02749 0.70 +0.5 190,983 - BACOVA_02749 0.81 -0.5 191,002 + BACOVA_02749 0.84 +0.6 191,028 + BACOVA_02749 0.88 -0.8 191,028 + BACOVA_02749 0.88 -0.8 191,029 - BACOVA_02749 0.88 -0.1 191,030 + BACOVA_02749 0.88 -1.8 191,030 + BACOVA_02749 0.88 +0.6 191,031 - BACOVA_02749 0.88 +0.4 191,031 - BACOVA_02749 0.88 +1.5 191,031 - BACOVA_02749 0.88 -0.8 191,038 - BACOVA_02749 0.89 -1.2 191,081 + -0.4 191,130 - -1.5 191,174 + +0.9 191,175 - +0.9 191,194 - +2.1 191,194 - -0.5 191,261 + BACOVA_02750 0.12 -0.7 191,261 + BACOVA_02750 0.12 -0.4 191,262 - BACOVA_02750 0.12 -0.4 191,262 - BACOVA_02750 0.12 -0.7 191,292 + BACOVA_02750 0.14 -0.8 191,299 - BACOVA_02750 0.15 -0.3
Or see this region's nucleotide sequence