Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01764 and BACOVA_01765 are separated by 163 nucleotides BACOVA_01765 and BACOVA_01766 are separated by 11 nucleotides BACOVA_01766 and BACOVA_01767 are separated by 12 nucleotides BACOVA_01767 and BACOVA_01768 are separated by 7 nucleotides
BACOVA_01764: BACOVA_01764 - hypothetical protein, at 185,447 to 185,563
_01764
BACOVA_01765: BACOVA_01765 - hypothetical protein, at 185,727 to 186,551
_01765
BACOVA_01766: BACOVA_01766 - hypothetical protein, at 186,563 to 188,116
_01766
BACOVA_01767: BACOVA_01767 - hypothetical protein, at 188,129 to 188,737
_01767
BACOVA_01768: BACOVA_01768 - putative sulfate adenylyltransferase subunit 2, at 188,745 to 189,653
_01768
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.618 kb on - strand at 185.657 kb on + strand at 185.695 kb on + strand at 185.704 kb on + strand at 185.712 kb on + strand at 185.712 kb on + strand at 185.712 kb on + strand at 185.712 kb on + strand at 185.740 kb on - strand at 185.740 kb on - strand at 185.743 kb on + strand at 185.744 kb on - strand at 185.744 kb on - strand at 185.744 kb on - strand at 185.824 kb on + strand, within BACOVA_01765 at 185.856 kb on - strand, within BACOVA_01765 at 185.858 kb on - strand, within BACOVA_01765 at 185.904 kb on - strand, within BACOVA_01765 at 185.941 kb on + strand, within BACOVA_01765 at 185.942 kb on - strand, within BACOVA_01765 at 185.942 kb on - strand, within BACOVA_01765 at 185.969 kb on + strand, within BACOVA_01765 at 185.970 kb on - strand, within BACOVA_01765 at 185.974 kb on + strand, within BACOVA_01765 at 185.975 kb on - strand, within BACOVA_01765 at 185.984 kb on - strand, within BACOVA_01765 at 186.038 kb on - strand, within BACOVA_01765 at 186.042 kb on - strand, within BACOVA_01765 at 186.042 kb on - strand, within BACOVA_01765 at 186.080 kb on + strand, within BACOVA_01765 at 186.084 kb on + strand, within BACOVA_01765 at 186.084 kb on + strand, within BACOVA_01765 at 186.084 kb on + strand, within BACOVA_01765 at 186.085 kb on - strand, within BACOVA_01765 at 186.109 kb on - strand, within BACOVA_01765 at 186.137 kb on + strand, within BACOVA_01765 at 186.138 kb on - strand, within BACOVA_01765 at 186.287 kb on + strand, within BACOVA_01765 at 186.371 kb on + strand, within BACOVA_01765 at 186.371 kb on + strand, within BACOVA_01765 at 186.372 kb on - strand, within BACOVA_01765 at 186.383 kb on - strand, within BACOVA_01765 at 186.385 kb on - strand, within BACOVA_01765 at 186.460 kb on + strand, within BACOVA_01765 at 186.492 kb on + strand at 186.495 kb on - strand at 186.495 kb on - strand at 186.550 kb on - strand at 186.554 kb on - strand at 186.561 kb on - strand at 186.580 kb on - strand at 186.580 kb on - strand at 186.584 kb on + strand at 186.586 kb on - strand at 186.588 kb on + strand at 186.588 kb on + strand at 186.629 kb on - strand at 186.629 kb on - strand at 186.649 kb on - strand at 186.721 kb on + strand, within BACOVA_01766 at 186.769 kb on + strand, within BACOVA_01766 at 186.803 kb on - strand, within BACOVA_01766 at 186.834 kb on + strand, within BACOVA_01766 at 186.834 kb on + strand, within BACOVA_01766 at 186.835 kb on - strand, within BACOVA_01766 at 186.838 kb on + strand, within BACOVA_01766 at 186.839 kb on - strand, within BACOVA_01766 at 186.854 kb on - strand, within BACOVA_01766 at 186.854 kb on - strand, within BACOVA_01766 at 186.892 kb on + strand, within BACOVA_01766 at 186.892 kb on + strand, within BACOVA_01766 at 186.895 kb on + strand, within BACOVA_01766 at 186.986 kb on + strand, within BACOVA_01766 at 187.006 kb on + strand, within BACOVA_01766 at 187.006 kb on + strand, within BACOVA_01766 at 187.006 kb on + strand, within BACOVA_01766 at 187.007 kb on - strand, within BACOVA_01766 at 187.012 kb on + strand, within BACOVA_01766 at 187.012 kb on + strand, within BACOVA_01766 at 187.056 kb on + strand, within BACOVA_01766 at 187.057 kb on - strand, within BACOVA_01766 at 187.057 kb on - strand, within BACOVA_01766 at 187.090 kb on - strand, within BACOVA_01766 at 187.136 kb on + strand, within BACOVA_01766 at 187.271 kb on - strand, within BACOVA_01766 at 187.337 kb on - strand, within BACOVA_01766 at 187.597 kb on + strand, within BACOVA_01766 at 187.618 kb on + strand, within BACOVA_01766 at 187.619 kb on - strand, within BACOVA_01766 at 187.621 kb on + strand, within BACOVA_01766 at 187.621 kb on + strand, within BACOVA_01766 at 187.621 kb on + strand, within BACOVA_01766 at 187.624 kb on + strand, within BACOVA_01766 at 187.624 kb on + strand, within BACOVA_01766 at 187.625 kb on - strand, within BACOVA_01766 at 187.625 kb on - strand, within BACOVA_01766 at 187.625 kb on - strand, within BACOVA_01766 at 187.627 kb on + strand, within BACOVA_01766 at 187.628 kb on - strand, within BACOVA_01766 at 187.630 kb on + strand, within BACOVA_01766 at 187.664 kb on + strand, within BACOVA_01766 at 187.665 kb on - strand, within BACOVA_01766 at 187.674 kb on - strand, within BACOVA_01766 at 187.819 kb on - strand, within BACOVA_01766 at 187.819 kb on - strand, within BACOVA_01766 at 187.856 kb on - strand, within BACOVA_01766 at 187.858 kb on + strand, within BACOVA_01766 at 187.859 kb on - strand, within BACOVA_01766 at 188.040 kb on + strand at 188.040 kb on + strand at 188.059 kb on + strand at 188.063 kb on - strand at 188.083 kb on + strand at 188.084 kb on - strand at 188.126 kb on + strand at 188.146 kb on + strand at 188.146 kb on + strand at 188.146 kb on + strand at 188.147 kb on - strand at 188.147 kb on - strand at 188.147 kb on - strand at 188.148 kb on + strand at 188.148 kb on + strand at 188.148 kb on + strand at 188.151 kb on - strand at 188.157 kb on + strand at 188.287 kb on + strand, within BACOVA_01767 at 188.324 kb on - strand, within BACOVA_01767 at 188.345 kb on - strand, within BACOVA_01767 at 188.347 kb on + strand, within BACOVA_01767 at 188.428 kb on + strand, within BACOVA_01767 at 188.429 kb on - strand, within BACOVA_01767 at 188.429 kb on - strand, within BACOVA_01767 at 188.449 kb on + strand, within BACOVA_01767 at 188.449 kb on + strand, within BACOVA_01767 at 188.449 kb on + strand, within BACOVA_01767 at 188.459 kb on - strand, within BACOVA_01767 at 188.461 kb on + strand, within BACOVA_01767 at 188.462 kb on - strand, within BACOVA_01767 at 188.462 kb on - strand, within BACOVA_01767 at 188.492 kb on - strand, within BACOVA_01767 at 188.570 kb on + strand, within BACOVA_01767 at 188.571 kb on - strand, within BACOVA_01767 at 188.659 kb on + strand, within BACOVA_01767 at 188.730 kb on + strand at 188.754 kb on + strand at 188.756 kb on + strand at 188.756 kb on + strand at 188.762 kb on - strand at 188.793 kb on - strand at 188.798 kb on + strand at 188.799 kb on - strand at 188.875 kb on + strand, within BACOVA_01768 at 188.876 kb on - strand, within BACOVA_01768 at 188.876 kb on - strand, within BACOVA_01768 at 188.931 kb on - strand, within BACOVA_01768 at 189.018 kb on - strand, within BACOVA_01768 at 189.043 kb on + strand, within BACOVA_01768 at 189.065 kb on + strand, within BACOVA_01768 at 189.065 kb on + strand, within BACOVA_01768 at 189.065 kb on + strand, within BACOVA_01768 at 189.074 kb on + strand, within BACOVA_01768 at 189.116 kb on + strand, within BACOVA_01768 at 189.116 kb on + strand, within BACOVA_01768
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 185,618 - +0.3 185,657 + +0.5 185,695 + +0.3 185,704 + -0.3 185,712 + +1.7 185,712 + -0.0 185,712 + -0.5 185,712 + -0.2 185,740 - -0.0 185,740 - -0.9 185,743 + +0.3 185,744 - -1.2 185,744 - +1.1 185,744 - +2.3 185,824 + BACOVA_01765 0.12 -1.0 185,856 - BACOVA_01765 0.16 +1.1 185,858 - BACOVA_01765 0.16 +2.3 185,904 - BACOVA_01765 0.21 -0.0 185,941 + BACOVA_01765 0.26 -2.4 185,942 - BACOVA_01765 0.26 -0.9 185,942 - BACOVA_01765 0.26 +0.3 185,969 + BACOVA_01765 0.29 -1.3 185,970 - BACOVA_01765 0.29 -0.8 185,974 + BACOVA_01765 0.30 -0.2 185,975 - BACOVA_01765 0.30 -0.4 185,984 - BACOVA_01765 0.31 +0.6 186,038 - BACOVA_01765 0.38 +1.3 186,042 - BACOVA_01765 0.38 -0.8 186,042 - BACOVA_01765 0.38 -0.7 186,080 + BACOVA_01765 0.43 -0.3 186,084 + BACOVA_01765 0.43 -0.4 186,084 + BACOVA_01765 0.43 -0.9 186,084 + BACOVA_01765 0.43 -0.9 186,085 - BACOVA_01765 0.43 -0.3 186,109 - BACOVA_01765 0.46 -0.4 186,137 + BACOVA_01765 0.50 +0.7 186,138 - BACOVA_01765 0.50 -0.4 186,287 + BACOVA_01765 0.68 +0.6 186,371 + BACOVA_01765 0.78 +0.5 186,371 + BACOVA_01765 0.78 -0.3 186,372 - BACOVA_01765 0.78 -1.0 186,383 - BACOVA_01765 0.80 -1.4 186,385 - BACOVA_01765 0.80 -0.4 186,460 + BACOVA_01765 0.89 -0.7 186,492 + -0.5 186,495 - -0.5 186,495 - -0.2 186,550 - +0.1 186,554 - -0.5 186,561 - +0.0 186,580 - -0.5 186,580 - +0.6 186,584 + -0.1 186,586 - -0.5 186,588 + -0.3 186,588 + +0.1 186,629 - +0.1 186,629 - -1.2 186,649 - +1.3 186,721 + BACOVA_01766 0.10 -0.1 186,769 + BACOVA_01766 0.13 +0.1 186,803 - BACOVA_01766 0.15 -0.7 186,834 + BACOVA_01766 0.17 +0.6 186,834 + BACOVA_01766 0.17 +1.6 186,835 - BACOVA_01766 0.18 -1.0 186,838 + BACOVA_01766 0.18 -0.7 186,839 - BACOVA_01766 0.18 +1.0 186,854 - BACOVA_01766 0.19 +0.1 186,854 - BACOVA_01766 0.19 -2.0 186,892 + BACOVA_01766 0.21 -0.3 186,892 + BACOVA_01766 0.21 -1.0 186,895 + BACOVA_01766 0.21 +2.0 186,986 + BACOVA_01766 0.27 +0.1 187,006 + BACOVA_01766 0.29 +0.4 187,006 + BACOVA_01766 0.29 -0.7 187,006 + BACOVA_01766 0.29 -0.5 187,007 - BACOVA_01766 0.29 -0.1 187,012 + BACOVA_01766 0.29 -0.3 187,012 + BACOVA_01766 0.29 -0.7 187,056 + BACOVA_01766 0.32 -0.8 187,057 - BACOVA_01766 0.32 -0.0 187,057 - BACOVA_01766 0.32 -0.2 187,090 - BACOVA_01766 0.34 -0.5 187,136 + BACOVA_01766 0.37 -0.3 187,271 - BACOVA_01766 0.46 -0.8 187,337 - BACOVA_01766 0.50 -0.9 187,597 + BACOVA_01766 0.67 +0.3 187,618 + BACOVA_01766 0.68 +0.9 187,619 - BACOVA_01766 0.68 +0.7 187,621 + BACOVA_01766 0.68 -0.9 187,621 + BACOVA_01766 0.68 +0.1 187,621 + BACOVA_01766 0.68 -0.0 187,624 + BACOVA_01766 0.68 -0.4 187,624 + BACOVA_01766 0.68 -1.9 187,625 - BACOVA_01766 0.68 -0.3 187,625 - BACOVA_01766 0.68 +0.3 187,625 - BACOVA_01766 0.68 -0.5 187,627 + BACOVA_01766 0.68 +1.3 187,628 - BACOVA_01766 0.69 -0.4 187,630 + BACOVA_01766 0.69 -0.7 187,664 + BACOVA_01766 0.71 -2.3 187,665 - BACOVA_01766 0.71 +1.0 187,674 - BACOVA_01766 0.71 -0.3 187,819 - BACOVA_01766 0.81 -0.7 187,819 - BACOVA_01766 0.81 -0.3 187,856 - BACOVA_01766 0.83 -0.3 187,858 + BACOVA_01766 0.83 +0.2 187,859 - BACOVA_01766 0.83 -0.3 188,040 + +0.1 188,040 + -0.3 188,059 + +0.3 188,063 - -0.9 188,083 + -1.3 188,084 - +0.2 188,126 + -0.5 188,146 + -0.7 188,146 + +0.6 188,146 + -0.6 188,147 - +0.7 188,147 - -0.3 188,147 - -0.3 188,148 + +1.3 188,148 + -0.1 188,148 + -0.7 188,151 - +0.8 188,157 + -0.5 188,287 + BACOVA_01767 0.26 -1.5 188,324 - BACOVA_01767 0.32 +0.7 188,345 - BACOVA_01767 0.35 -0.9 188,347 + BACOVA_01767 0.36 -2.0 188,428 + BACOVA_01767 0.49 -2.7 188,429 - BACOVA_01767 0.49 -0.9 188,429 - BACOVA_01767 0.49 -0.8 188,449 + BACOVA_01767 0.53 -0.6 188,449 + BACOVA_01767 0.53 -1.6 188,449 + BACOVA_01767 0.53 -1.0 188,459 - BACOVA_01767 0.54 -2.5 188,461 + BACOVA_01767 0.55 -0.3 188,462 - BACOVA_01767 0.55 +1.1 188,462 - BACOVA_01767 0.55 +2.3 188,492 - BACOVA_01767 0.60 -1.4 188,570 + BACOVA_01767 0.72 -0.6 188,571 - BACOVA_01767 0.73 +0.3 188,659 + BACOVA_01767 0.87 -1.0 188,730 + -1.0 188,754 + -0.8 188,756 + +1.9 188,756 + +1.1 188,762 - -0.4 188,793 - -0.0 188,798 + -0.1 188,799 - -0.5 188,875 + BACOVA_01768 0.14 -0.1 188,876 - BACOVA_01768 0.14 -1.9 188,876 - BACOVA_01768 0.14 -0.1 188,931 - BACOVA_01768 0.20 +0.5 189,018 - BACOVA_01768 0.30 -0.3 189,043 + BACOVA_01768 0.33 -0.3 189,065 + BACOVA_01768 0.35 +1.1 189,065 + BACOVA_01768 0.35 +0.7 189,065 + BACOVA_01768 0.35 +0.9 189,074 + BACOVA_01768 0.36 +1.1 189,116 + BACOVA_01768 0.41 -1.2 189,116 + BACOVA_01768 0.41 -1.3
Or see this region's nucleotide sequence