Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01618

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01617 and BACOVA_01618 are separated by 9 nucleotidesBACOVA_01618 and BACOVA_01619 are separated by 20 nucleotides BACOVA_01617: BACOVA_01617 - peptidase, M24 family, at 122,272 to 123,645 _01617 BACOVA_01618: BACOVA_01618 - hypothetical protein, at 123,655 to 123,831 _01618 BACOVA_01619: BACOVA_01619 - acetyl xylan esterase (AXE1), at 123,852 to 125,174 _01619 Position (kb) 123 124Strain fitness (log2 ratio) -2 -1 0 1 2at 122.761 kb on + strand, within BACOVA_01617at 122.763 kb on + strand, within BACOVA_01617at 122.764 kb on - strand, within BACOVA_01617at 122.823 kb on + strand, within BACOVA_01617at 122.823 kb on + strand, within BACOVA_01617at 122.824 kb on - strand, within BACOVA_01617at 122.824 kb on - strand, within BACOVA_01617at 122.826 kb on + strand, within BACOVA_01617at 122.826 kb on + strand, within BACOVA_01617at 122.832 kb on + strand, within BACOVA_01617at 122.833 kb on - strand, within BACOVA_01617at 122.840 kb on + strand, within BACOVA_01617at 122.841 kb on - strand, within BACOVA_01617at 122.857 kb on + strand, within BACOVA_01617at 122.857 kb on + strand, within BACOVA_01617at 122.857 kb on + strand, within BACOVA_01617at 122.858 kb on - strand, within BACOVA_01617at 122.858 kb on - strand, within BACOVA_01617at 122.858 kb on - strand, within BACOVA_01617at 122.858 kb on - strand, within BACOVA_01617at 122.858 kb on - strand, within BACOVA_01617at 122.858 kb on - strand, within BACOVA_01617at 122.902 kb on - strand, within BACOVA_01617at 122.916 kb on - strand, within BACOVA_01617at 122.916 kb on - strand, within BACOVA_01617at 122.938 kb on - strand, within BACOVA_01617at 122.965 kb on + strand, within BACOVA_01617at 123.023 kb on + strand, within BACOVA_01617at 123.023 kb on + strand, within BACOVA_01617at 123.024 kb on - strand, within BACOVA_01617at 123.046 kb on - strand, within BACOVA_01617at 123.055 kb on - strand, within BACOVA_01617at 123.055 kb on - strand, within BACOVA_01617at 123.098 kb on + strand, within BACOVA_01617at 123.099 kb on - strand, within BACOVA_01617at 123.100 kb on + strand, within BACOVA_01617at 123.101 kb on - strand, within BACOVA_01617at 123.101 kb on - strand, within BACOVA_01617at 123.160 kb on + strand, within BACOVA_01617at 123.161 kb on - strand, within BACOVA_01617at 123.162 kb on + strand, within BACOVA_01617at 123.162 kb on + strand, within BACOVA_01617at 123.162 kb on + strand, within BACOVA_01617at 123.163 kb on - strand, within BACOVA_01617at 123.163 kb on - strand, within BACOVA_01617at 123.171 kb on - strand, within BACOVA_01617at 123.171 kb on - strand, within BACOVA_01617at 123.171 kb on - strand, within BACOVA_01617at 123.172 kb on + strand, within BACOVA_01617at 123.275 kb on - strand, within BACOVA_01617at 123.287 kb on + strand, within BACOVA_01617at 123.311 kb on + strand, within BACOVA_01617at 123.311 kb on + strand, within BACOVA_01617at 123.318 kb on + strand, within BACOVA_01617at 123.318 kb on + strand, within BACOVA_01617at 123.319 kb on - strand, within BACOVA_01617at 123.338 kb on + strand, within BACOVA_01617at 123.339 kb on - strand, within BACOVA_01617at 123.339 kb on - strand, within BACOVA_01617at 123.339 kb on - strand, within BACOVA_01617at 123.345 kb on - strand, within BACOVA_01617at 123.345 kb on - strand, within BACOVA_01617at 123.345 kb on - strand, within BACOVA_01617at 123.349 kb on + strand, within BACOVA_01617at 123.350 kb on - strand, within BACOVA_01617at 123.364 kb on - strand, within BACOVA_01617at 123.402 kb on + strand, within BACOVA_01617at 123.403 kb on - strand, within BACOVA_01617at 123.403 kb on - strand, within BACOVA_01617at 123.435 kb on - strand, within BACOVA_01617at 123.445 kb on - strand, within BACOVA_01617at 123.448 kb on + strand, within BACOVA_01617at 123.518 kb on + strandat 123.529 kb on + strandat 123.531 kb on + strandat 123.531 kb on + strandat 123.531 kb on + strandat 123.531 kb on + strandat 123.532 kb on - strandat 123.638 kb on + strandat 123.639 kb on - strandat 123.751 kb on + strand, within BACOVA_01618at 123.752 kb on - strand, within BACOVA_01618at 123.760 kb on + strand, within BACOVA_01618at 123.777 kb on + strand, within BACOVA_01618at 123.803 kb on - strand, within BACOVA_01618at 123.836 kb on + strandat 123.836 kb on + strandat 123.837 kb on - strandat 123.845 kb on - strandat 123.845 kb on - strandat 123.858 kb on - strandat 123.858 kb on - strandat 123.874 kb on + strandat 123.875 kb on - strandat 123.881 kb on - strandat 123.887 kb on - strandat 123.893 kb on - strandat 123.907 kb on + strandat 123.907 kb on + strandat 123.908 kb on - strandat 123.908 kb on - strandat 123.920 kb on - strandat 123.931 kb on - strandat 123.937 kb on - strandat 123.939 kb on - strandat 123.946 kb on + strandat 123.990 kb on - strand, within BACOVA_01619at 124.006 kb on + strand, within BACOVA_01619at 124.012 kb on + strand, within BACOVA_01619at 124.013 kb on - strand, within BACOVA_01619at 124.018 kb on + strand, within BACOVA_01619at 124.026 kb on + strand, within BACOVA_01619at 124.027 kb on - strand, within BACOVA_01619at 124.082 kb on + strand, within BACOVA_01619at 124.112 kb on + strand, within BACOVA_01619at 124.113 kb on - strand, within BACOVA_01619at 124.114 kb on + strand, within BACOVA_01619at 124.114 kb on + strand, within BACOVA_01619at 124.212 kb on + strand, within BACOVA_01619at 124.212 kb on + strand, within BACOVA_01619at 124.212 kb on + strand, within BACOVA_01619at 124.213 kb on - strand, within BACOVA_01619at 124.223 kb on + strand, within BACOVA_01619at 124.224 kb on - strand, within BACOVA_01619at 124.261 kb on - strand, within BACOVA_01619at 124.262 kb on + strand, within BACOVA_01619at 124.262 kb on + strand, within BACOVA_01619at 124.262 kb on + strand, within BACOVA_01619at 124.262 kb on + strand, within BACOVA_01619at 124.263 kb on - strand, within BACOVA_01619at 124.263 kb on - strand, within BACOVA_01619at 124.263 kb on - strand, within BACOVA_01619at 124.304 kb on + strand, within BACOVA_01619at 124.335 kb on + strand, within BACOVA_01619at 124.336 kb on - strand, within BACOVA_01619at 124.336 kb on - strand, within BACOVA_01619at 124.336 kb on - strand, within BACOVA_01619at 124.336 kb on - strand, within BACOVA_01619at 124.337 kb on + strand, within BACOVA_01619at 124.376 kb on - strand, within BACOVA_01619at 124.383 kb on + strand, within BACOVA_01619at 124.384 kb on - strand, within BACOVA_01619at 124.426 kb on - strand, within BACOVA_01619at 124.431 kb on + strand, within BACOVA_01619at 124.431 kb on + strand, within BACOVA_01619at 124.436 kb on - strand, within BACOVA_01619at 124.436 kb on - strand, within BACOVA_01619at 124.436 kb on - strand, within BACOVA_01619at 124.436 kb on - strand, within BACOVA_01619at 124.475 kb on - strand, within BACOVA_01619at 124.645 kb on - strand, within BACOVA_01619at 124.677 kb on + strand, within BACOVA_01619at 124.677 kb on + strand, within BACOVA_01619at 124.677 kb on + strand, within BACOVA_01619at 124.682 kb on + strand, within BACOVA_01619at 124.694 kb on - strand, within BACOVA_01619at 124.696 kb on - strand, within BACOVA_01619at 124.696 kb on - strand, within BACOVA_01619at 124.696 kb on - strand, within BACOVA_01619at 124.696 kb on - strand, within BACOVA_01619at 124.726 kb on + strand, within BACOVA_01619at 124.726 kb on + strand, within BACOVA_01619at 124.736 kb on - strand, within BACOVA_01619

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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122,761 + BACOVA_01617 0.36 -0.5
122,763 + BACOVA_01617 0.36 +0.2
122,764 - BACOVA_01617 0.36 -0.2
122,823 + BACOVA_01617 0.40 -0.8
122,823 + BACOVA_01617 0.40 -0.7
122,824 - BACOVA_01617 0.40 -0.6
122,824 - BACOVA_01617 0.40 -1.9
122,826 + BACOVA_01617 0.40 -0.1
122,826 + BACOVA_01617 0.40 -0.1
122,832 + BACOVA_01617 0.41 +0.1
122,833 - BACOVA_01617 0.41 -0.3
122,840 + BACOVA_01617 0.41 +0.5
122,841 - BACOVA_01617 0.41 -0.1
122,857 + BACOVA_01617 0.43 -0.1
122,857 + BACOVA_01617 0.43 +0.5
122,857 + BACOVA_01617 0.43 -1.2
122,858 - BACOVA_01617 0.43 +0.9
122,858 - BACOVA_01617 0.43 +0.2
122,858 - BACOVA_01617 0.43 +0.2
122,858 - BACOVA_01617 0.43 +1.5
122,858 - BACOVA_01617 0.43 +0.5
122,858 - BACOVA_01617 0.43 +0.9
122,902 - BACOVA_01617 0.46 -1.2
122,916 - BACOVA_01617 0.47 +1.1
122,916 - BACOVA_01617 0.47 +0.0
122,938 - BACOVA_01617 0.48 -0.1
122,965 + BACOVA_01617 0.50 -1.7
123,023 + BACOVA_01617 0.55 +0.2
123,023 + BACOVA_01617 0.55 +0.5
123,024 - BACOVA_01617 0.55 +0.6
123,046 - BACOVA_01617 0.56 +0.7
123,055 - BACOVA_01617 0.57 +0.3
123,055 - BACOVA_01617 0.57 -1.2
123,098 + BACOVA_01617 0.60 -0.6
123,099 - BACOVA_01617 0.60 +0.5
123,100 + BACOVA_01617 0.60 -1.4
123,101 - BACOVA_01617 0.60 -0.1
123,101 - BACOVA_01617 0.60 +0.2
123,160 + BACOVA_01617 0.65 -0.7
123,161 - BACOVA_01617 0.65 -0.4
123,162 + BACOVA_01617 0.65 +0.3
123,162 + BACOVA_01617 0.65 -0.5
123,162 + BACOVA_01617 0.65 -0.7
123,163 - BACOVA_01617 0.65 +0.3
123,163 - BACOVA_01617 0.65 +0.3
123,171 - BACOVA_01617 0.65 +0.6
123,171 - BACOVA_01617 0.65 +0.5
123,171 - BACOVA_01617 0.65 -1.4
123,172 + BACOVA_01617 0.66 -0.0
123,275 - BACOVA_01617 0.73 -0.6
123,287 + BACOVA_01617 0.74 +0.1
123,311 + BACOVA_01617 0.76 +0.2
123,311 + BACOVA_01617 0.76 -0.1
123,318 + BACOVA_01617 0.76 +0.1
123,318 + BACOVA_01617 0.76 +0.9
123,319 - BACOVA_01617 0.76 +0.4
123,338 + BACOVA_01617 0.78 +0.6
123,339 - BACOVA_01617 0.78 +0.9
123,339 - BACOVA_01617 0.78 +0.4
123,339 - BACOVA_01617 0.78 -0.0
123,345 - BACOVA_01617 0.78 +0.3
123,345 - BACOVA_01617 0.78 +0.3
123,345 - BACOVA_01617 0.78 -0.2
123,349 + BACOVA_01617 0.78 +0.4
123,350 - BACOVA_01617 0.78 -1.3
123,364 - BACOVA_01617 0.79 -0.2
123,402 + BACOVA_01617 0.82 +0.3
123,403 - BACOVA_01617 0.82 -1.6
123,403 - BACOVA_01617 0.82 -0.3
123,435 - BACOVA_01617 0.85 +0.5
123,445 - BACOVA_01617 0.85 +0.6
123,448 + BACOVA_01617 0.86 -0.3
123,518 + -0.5
123,529 + +0.5
123,531 + +0.5
123,531 + +1.1
123,531 + -0.1
123,531 + +0.4
123,532 - -1.1
123,638 + +0.7
123,639 - -0.0
123,751 + BACOVA_01618 0.54 -1.2
123,752 - BACOVA_01618 0.55 -0.1
123,760 + BACOVA_01618 0.59 -0.1
123,777 + BACOVA_01618 0.69 -0.1
123,803 - BACOVA_01618 0.84 -0.4
123,836 + +1.9
123,836 + +0.5
123,837 - -1.0
123,845 - -0.1
123,845 - -1.8
123,858 - -1.6
123,858 - +0.5
123,874 + +0.8
123,875 - +1.1
123,881 - +1.3
123,887 - -0.0
123,893 - -1.7
123,907 + +0.4
123,907 + +0.9
123,908 - +0.3
123,908 - +0.2
123,920 - +0.0
123,931 - -1.4
123,937 - +0.0
123,939 - +0.5
123,946 + -0.4
123,990 - BACOVA_01619 0.10 +0.3
124,006 + BACOVA_01619 0.12 -1.5
124,012 + BACOVA_01619 0.12 +0.0
124,013 - BACOVA_01619 0.12 -0.1
124,018 + BACOVA_01619 0.13 -0.3
124,026 + BACOVA_01619 0.13 -0.6
124,027 - BACOVA_01619 0.13 -0.4
124,082 + BACOVA_01619 0.17 +1.1
124,112 + BACOVA_01619 0.20 +0.1
124,113 - BACOVA_01619 0.20 -1.5
124,114 + BACOVA_01619 0.20 +0.4
124,114 + BACOVA_01619 0.20 -1.3
124,212 + BACOVA_01619 0.27 -1.8
124,212 + BACOVA_01619 0.27 +0.3
124,212 + BACOVA_01619 0.27 -0.5
124,213 - BACOVA_01619 0.27 +0.9
124,223 + BACOVA_01619 0.28 +0.5
124,224 - BACOVA_01619 0.28 -0.2
124,261 - BACOVA_01619 0.31 -0.1
124,262 + BACOVA_01619 0.31 +0.8
124,262 + BACOVA_01619 0.31 -0.7
124,262 + BACOVA_01619 0.31 +0.1
124,262 + BACOVA_01619 0.31 -0.2
124,263 - BACOVA_01619 0.31 +1.5
124,263 - BACOVA_01619 0.31 -1.1
124,263 - BACOVA_01619 0.31 +0.3
124,304 + BACOVA_01619 0.34 +0.1
124,335 + BACOVA_01619 0.37 +0.0
124,336 - BACOVA_01619 0.37 +0.1
124,336 - BACOVA_01619 0.37 +0.2
124,336 - BACOVA_01619 0.37 +1.9
124,336 - BACOVA_01619 0.37 +0.5
124,337 + BACOVA_01619 0.37 -0.6
124,376 - BACOVA_01619 0.40 -0.3
124,383 + BACOVA_01619 0.40 +0.1
124,384 - BACOVA_01619 0.40 -0.6
124,426 - BACOVA_01619 0.43 +0.1
124,431 + BACOVA_01619 0.44 -0.4
124,431 + BACOVA_01619 0.44 -0.5
124,436 - BACOVA_01619 0.44 -0.8
124,436 - BACOVA_01619 0.44 -0.9
124,436 - BACOVA_01619 0.44 -0.7
124,436 - BACOVA_01619 0.44 -0.4
124,475 - BACOVA_01619 0.47 +0.1
124,645 - BACOVA_01619 0.60 +1.2
124,677 + BACOVA_01619 0.62 +0.2
124,677 + BACOVA_01619 0.62 -0.7
124,677 + BACOVA_01619 0.62 -2.3
124,682 + BACOVA_01619 0.63 -0.7
124,694 - BACOVA_01619 0.64 -2.0
124,696 - BACOVA_01619 0.64 -0.2
124,696 - BACOVA_01619 0.64 +0.5
124,696 - BACOVA_01619 0.64 -0.1
124,696 - BACOVA_01619 0.64 +0.9
124,726 + BACOVA_01619 0.66 +0.7
124,726 + BACOVA_01619 0.66 -0.4
124,736 - BACOVA_01619 0.67 -0.8

Or see this region's nucleotide sequence