Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00381

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00379 and BACOVA_00380 are separated by 109 nucleotidesBACOVA_00380 and BACOVA_00381 are separated by 17 nucleotidesBACOVA_00381 and BACOVA_00382 overlap by 22 nucleotidesBACOVA_00382 and BACOVA_00383 are separated by 73 nucleotides BACOVA_00379: BACOVA_00379 - SagB-type dehydrogenase domain protein, at 4,980 to 5,582 _00379 BACOVA_00380: BACOVA_00380 - putative thioredoxin, at 5,692 to 6,156 _00380 BACOVA_00381: BACOVA_00381 - putative thioredoxin, at 6,174 to 6,473 _00381 BACOVA_00382: BACOVA_00382 - hypothetical protein, at 6,452 to 6,568 _00382 BACOVA_00383: BACOVA_00383 - hypothetical protein, at 6,642 to 7,769 _00383 Position (kb) 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 5.219 kb on - strand, within BACOVA_00379at 5.219 kb on - strand, within BACOVA_00379at 5.219 kb on - strand, within BACOVA_00379at 5.219 kb on - strand, within BACOVA_00379at 5.219 kb on - strand, within BACOVA_00379at 5.220 kb on + strand, within BACOVA_00379at 5.220 kb on + strand, within BACOVA_00379at 5.221 kb on - strand, within BACOVA_00379at 5.221 kb on - strand, within BACOVA_00379at 5.221 kb on - strand, within BACOVA_00379at 5.221 kb on - strand, within BACOVA_00379at 5.221 kb on - strand, within BACOVA_00379at 5.224 kb on + strand, within BACOVA_00379at 5.225 kb on - strand, within BACOVA_00379at 5.225 kb on - strand, within BACOVA_00379at 5.227 kb on + strand, within BACOVA_00379at 5.227 kb on + strand, within BACOVA_00379at 5.228 kb on - strand, within BACOVA_00379at 5.230 kb on + strand, within BACOVA_00379at 5.245 kb on - strand, within BACOVA_00379at 5.251 kb on - strand, within BACOVA_00379at 5.258 kb on + strand, within BACOVA_00379at 5.356 kb on + strand, within BACOVA_00379at 5.473 kb on + strand, within BACOVA_00379at 5.474 kb on - strand, within BACOVA_00379at 5.474 kb on - strand, within BACOVA_00379at 5.474 kb on - strand, within BACOVA_00379at 5.474 kb on - strand, within BACOVA_00379at 5.572 kb on - strandat 5.580 kb on + strandat 5.597 kb on + strandat 5.649 kb on - strandat 5.655 kb on - strandat 5.655 kb on - strandat 5.693 kb on + strandat 5.786 kb on - strand, within BACOVA_00380at 5.811 kb on + strand, within BACOVA_00380at 5.812 kb on - strand, within BACOVA_00380at 5.812 kb on - strand, within BACOVA_00380at 5.855 kb on + strand, within BACOVA_00380at 5.877 kb on - strand, within BACOVA_00380at 5.901 kb on + strand, within BACOVA_00380at 5.942 kb on - strand, within BACOVA_00380at 5.942 kb on - strand, within BACOVA_00380at 5.961 kb on + strand, within BACOVA_00380at 5.961 kb on + strand, within BACOVA_00380at 5.961 kb on + strand, within BACOVA_00380at 5.962 kb on - strand, within BACOVA_00380at 5.964 kb on + strand, within BACOVA_00380at 5.972 kb on + strand, within BACOVA_00380at 5.973 kb on - strand, within BACOVA_00380at 6.022 kb on - strand, within BACOVA_00380at 6.022 kb on - strand, within BACOVA_00380at 6.078 kb on + strand, within BACOVA_00380at 6.088 kb on - strand, within BACOVA_00380at 6.104 kb on + strand, within BACOVA_00380at 6.107 kb on - strand, within BACOVA_00380at 6.107 kb on - strand, within BACOVA_00380at 6.133 kb on + strandat 6.143 kb on - strandat 6.145 kb on + strandat 6.168 kb on - strandat 6.179 kb on + strandat 6.180 kb on - strandat 6.181 kb on + strandat 6.182 kb on - strandat 6.182 kb on - strandat 6.195 kb on - strandat 6.265 kb on - strand, within BACOVA_00381at 6.267 kb on - strand, within BACOVA_00381at 6.285 kb on + strand, within BACOVA_00381at 6.297 kb on - strand, within BACOVA_00381at 6.297 kb on - strand, within BACOVA_00381at 6.328 kb on - strand, within BACOVA_00381at 6.367 kb on - strand, within BACOVA_00381at 6.430 kb on - strand, within BACOVA_00381at 6.451 kb on - strandat 6.454 kb on - strandat 6.530 kb on + strand, within BACOVA_00382at 6.538 kb on + strand, within BACOVA_00382at 6.540 kb on + strand, within BACOVA_00382at 6.574 kb on - strandat 6.574 kb on - strandat 6.574 kb on - strandat 6.582 kb on + strandat 6.582 kb on + strandat 6.582 kb on + strandat 6.626 kb on + strandat 6.824 kb on + strand, within BACOVA_00383at 6.886 kb on - strand, within BACOVA_00383at 6.896 kb on - strand, within BACOVA_00383at 6.910 kb on - strand, within BACOVA_00383at 6.924 kb on + strand, within BACOVA_00383at 6.924 kb on + strand, within BACOVA_00383at 6.924 kb on + strand, within BACOVA_00383at 6.925 kb on - strand, within BACOVA_00383at 6.925 kb on - strand, within BACOVA_00383at 6.925 kb on - strand, within BACOVA_00383at 6.925 kb on - strand, within BACOVA_00383at 6.928 kb on - strand, within BACOVA_00383at 6.929 kb on + strand, within BACOVA_00383at 6.932 kb on - strand, within BACOVA_00383at 6.978 kb on + strand, within BACOVA_00383at 6.999 kb on - strand, within BACOVA_00383at 7.003 kb on - strand, within BACOVA_00383at 7.003 kb on - strand, within BACOVA_00383at 7.051 kb on - strand, within BACOVA_00383at 7.051 kb on - strand, within BACOVA_00383at 7.061 kb on - strand, within BACOVA_00383at 7.190 kb on + strand, within BACOVA_00383at 7.190 kb on + strand, within BACOVA_00383at 7.191 kb on - strand, within BACOVA_00383at 7.191 kb on - strand, within BACOVA_00383at 7.263 kb on + strand, within BACOVA_00383at 7.264 kb on - strand, within BACOVA_00383at 7.264 kb on - strand, within BACOVA_00383at 7.275 kb on + strand, within BACOVA_00383at 7.275 kb on + strand, within BACOVA_00383at 7.275 kb on + strand, within BACOVA_00383at 7.276 kb on - strand, within BACOVA_00383at 7.276 kb on - strand, within BACOVA_00383at 7.277 kb on + strand, within BACOVA_00383at 7.277 kb on + strand, within BACOVA_00383at 7.277 kb on + strand, within BACOVA_00383at 7.278 kb on - strand, within BACOVA_00383at 7.278 kb on - strand, within BACOVA_00383at 7.342 kb on + strand, within BACOVA_00383at 7.343 kb on - strand, within BACOVA_00383at 7.414 kb on + strand, within BACOVA_00383at 7.451 kb on + strand, within BACOVA_00383

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
remove
5,219 - BACOVA_00379 0.40 +0.1
5,219 - BACOVA_00379 0.40 -0.2
5,219 - BACOVA_00379 0.40 -0.4
5,219 - BACOVA_00379 0.40 +0.3
5,219 - BACOVA_00379 0.40 -0.3
5,220 + BACOVA_00379 0.40 +0.8
5,220 + BACOVA_00379 0.40 -0.9
5,221 - BACOVA_00379 0.40 -0.1
5,221 - BACOVA_00379 0.40 -0.6
5,221 - BACOVA_00379 0.40 -0.1
5,221 - BACOVA_00379 0.40 -0.2
5,221 - BACOVA_00379 0.40 +0.3
5,224 + BACOVA_00379 0.40 +1.0
5,225 - BACOVA_00379 0.41 -0.3
5,225 - BACOVA_00379 0.41 +1.3
5,227 + BACOVA_00379 0.41 -1.2
5,227 + BACOVA_00379 0.41 -1.5
5,228 - BACOVA_00379 0.41 +1.0
5,230 + BACOVA_00379 0.41 -0.7
5,245 - BACOVA_00379 0.44 -2.6
5,251 - BACOVA_00379 0.45 -0.0
5,258 + BACOVA_00379 0.46 -0.1
5,356 + BACOVA_00379 0.62 -0.9
5,473 + BACOVA_00379 0.82 -1.3
5,474 - BACOVA_00379 0.82 +0.3
5,474 - BACOVA_00379 0.82 +2.7
5,474 - BACOVA_00379 0.82 +1.3
5,474 - BACOVA_00379 0.82 -0.1
5,572 - -2.4
5,580 + -1.5
5,597 + +0.5
5,649 - +0.1
5,655 - -0.4
5,655 - -0.3
5,693 + +0.3
5,786 - BACOVA_00380 0.20 -0.3
5,811 + BACOVA_00380 0.26 -0.3
5,812 - BACOVA_00380 0.26 +0.5
5,812 - BACOVA_00380 0.26 +0.9
5,855 + BACOVA_00380 0.35 -1.3
5,877 - BACOVA_00380 0.40 +0.0
5,901 + BACOVA_00380 0.45 -0.3
5,942 - BACOVA_00380 0.54 -1.4
5,942 - BACOVA_00380 0.54 +0.7
5,961 + BACOVA_00380 0.58 -0.7
5,961 + BACOVA_00380 0.58 +0.4
5,961 + BACOVA_00380 0.58 +1.9
5,962 - BACOVA_00380 0.58 -1.2
5,964 + BACOVA_00380 0.58 +0.5
5,972 + BACOVA_00380 0.60 +1.3
5,973 - BACOVA_00380 0.60 -1.7
6,022 - BACOVA_00380 0.71 +1.3
6,022 - BACOVA_00380 0.71 +0.2
6,078 + BACOVA_00380 0.83 -0.7
6,088 - BACOVA_00380 0.85 -0.2
6,104 + BACOVA_00380 0.89 +0.5
6,107 - BACOVA_00380 0.89 -0.4
6,107 - BACOVA_00380 0.89 +0.1
6,133 + -0.5
6,143 - -0.5
6,145 + -0.7
6,168 - +0.3
6,179 + -0.5
6,180 - +1.3
6,181 + -0.4
6,182 - +0.1
6,182 - -0.1
6,195 - -0.7
6,265 - BACOVA_00381 0.30 -0.0
6,267 - BACOVA_00381 0.31 -0.6
6,285 + BACOVA_00381 0.37 +0.9
6,297 - BACOVA_00381 0.41 -0.4
6,297 - BACOVA_00381 0.41 -1.3
6,328 - BACOVA_00381 0.51 -0.0
6,367 - BACOVA_00381 0.64 +0.3
6,430 - BACOVA_00381 0.85 -0.0
6,451 - -1.2
6,454 - +0.6
6,530 + BACOVA_00382 0.67 -1.7
6,538 + BACOVA_00382 0.74 -0.3
6,540 + BACOVA_00382 0.75 -0.0
6,574 - -0.7
6,574 - -0.3
6,574 - -0.8
6,582 + -0.7
6,582 + +0.6
6,582 + -0.6
6,626 + -0.4
6,824 + BACOVA_00383 0.16 +0.3
6,886 - BACOVA_00383 0.22 -0.7
6,896 - BACOVA_00383 0.23 -0.3
6,910 - BACOVA_00383 0.24 +0.3
6,924 + BACOVA_00383 0.25 +0.9
6,924 + BACOVA_00383 0.25 +0.5
6,924 + BACOVA_00383 0.25 +1.1
6,925 - BACOVA_00383 0.25 -1.6
6,925 - BACOVA_00383 0.25 +0.9
6,925 - BACOVA_00383 0.25 -0.6
6,925 - BACOVA_00383 0.25 -1.5
6,928 - BACOVA_00383 0.25 +0.4
6,929 + BACOVA_00383 0.25 -0.6
6,932 - BACOVA_00383 0.26 -0.6
6,978 + BACOVA_00383 0.30 +0.3
6,999 - BACOVA_00383 0.32 +0.3
7,003 - BACOVA_00383 0.32 -0.5
7,003 - BACOVA_00383 0.32 -0.3
7,051 - BACOVA_00383 0.36 -0.5
7,051 - BACOVA_00383 0.36 -0.6
7,061 - BACOVA_00383 0.37 +0.4
7,190 + BACOVA_00383 0.49 -0.4
7,190 + BACOVA_00383 0.49 -0.8
7,191 - BACOVA_00383 0.49 +0.1
7,191 - BACOVA_00383 0.49 -1.0
7,263 + BACOVA_00383 0.55 -0.7
7,264 - BACOVA_00383 0.55 +0.3
7,264 - BACOVA_00383 0.55 +0.3
7,275 + BACOVA_00383 0.56 +1.1
7,275 + BACOVA_00383 0.56 +0.2
7,275 + BACOVA_00383 0.56 -1.1
7,276 - BACOVA_00383 0.56 -1.6
7,276 - BACOVA_00383 0.56 -1.0
7,277 + BACOVA_00383 0.56 +0.7
7,277 + BACOVA_00383 0.56 -0.3
7,277 + BACOVA_00383 0.56 -2.3
7,278 - BACOVA_00383 0.56 +1.6
7,278 - BACOVA_00383 0.56 -0.4
7,342 + BACOVA_00383 0.62 +0.3
7,343 - BACOVA_00383 0.62 -0.7
7,414 + BACOVA_00383 0.68 +0.3
7,451 + BACOVA_00383 0.72 -0.0

Or see this region's nucleotide sequence