Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04616 and BACOVA_04617 overlap by 23 nucleotides BACOVA_04617 and BACOVA_04618 are separated by 44 nucleotides BACOVA_04618 and BACOVA_04619 are separated by 57 nucleotides BACOVA_04619 and BACOVA_04620 are separated by 415 nucleotides BACOVA_04620 and BACOVA_04621 are separated by 82 nucleotides
BACOVA_04616: BACOVA_04616 - glutathione peroxidase, at 14,420 to 14,962
_04616
BACOVA_04617: BACOVA_04617 - hydrolase, NUDIX family, at 14,940 to 15,458
_04617
BACOVA_04618: BACOVA_04618 - putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 15,503 to 16,723
_04618
BACOVA_04619: BACOVA_04619 - tRNA-Pro, at 16,781 to 16,855
_04619
BACOVA_04620: BACOVA_04620 - hypothetical protein, at 17,271 to 17,423
_04620
BACOVA_04621: BACOVA_04621 - site-specific recombinase, phage integrase family, at 17,506 to 18,780
_04621
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 14.513 kb on - strand, within BACOVA_04616 at 14.521 kb on + strand, within BACOVA_04616 at 14.552 kb on - strand, within BACOVA_04616 at 14.565 kb on + strand, within BACOVA_04616 at 14.582 kb on - strand, within BACOVA_04616 at 14.603 kb on + strand, within BACOVA_04616 at 14.604 kb on - strand, within BACOVA_04616 at 14.621 kb on - strand, within BACOVA_04616 at 14.622 kb on + strand, within BACOVA_04616 at 14.622 kb on + strand, within BACOVA_04616 at 14.634 kb on - strand, within BACOVA_04616 at 14.654 kb on - strand, within BACOVA_04616 at 14.654 kb on - strand, within BACOVA_04616 at 14.702 kb on - strand, within BACOVA_04616 at 14.736 kb on - strand, within BACOVA_04616 at 14.761 kb on + strand, within BACOVA_04616 at 14.798 kb on + strand, within BACOVA_04616 at 14.799 kb on - strand, within BACOVA_04616 at 14.941 kb on + strand at 14.941 kb on + strand at 14.942 kb on - strand at 14.960 kb on + strand at 14.961 kb on - strand at 15.146 kb on - strand, within BACOVA_04617 at 15.184 kb on - strand, within BACOVA_04617 at 15.207 kb on + strand, within BACOVA_04617 at 15.239 kb on + strand, within BACOVA_04617 at 15.250 kb on - strand, within BACOVA_04617 at 15.308 kb on - strand, within BACOVA_04617 at 15.308 kb on - strand, within BACOVA_04617 at 15.308 kb on - strand, within BACOVA_04617 at 15.330 kb on + strand, within BACOVA_04617 at 15.330 kb on + strand, within BACOVA_04617 at 15.330 kb on + strand, within BACOVA_04617 at 15.331 kb on - strand, within BACOVA_04617 at 15.346 kb on - strand, within BACOVA_04617 at 15.405 kb on - strand, within BACOVA_04617 at 15.405 kb on - strand, within BACOVA_04617 at 15.447 kb on - strand at 15.468 kb on + strand at 15.469 kb on - strand at 15.504 kb on + strand at 15.510 kb on - strand at 15.536 kb on + strand at 15.564 kb on + strand at 15.565 kb on - strand at 15.565 kb on - strand at 15.687 kb on - strand, within BACOVA_04618 at 15.687 kb on - strand, within BACOVA_04618 at 15.687 kb on - strand, within BACOVA_04618 at 15.692 kb on - strand, within BACOVA_04618 at 15.739 kb on - strand, within BACOVA_04618 at 15.739 kb on - strand, within BACOVA_04618 at 15.743 kb on + strand, within BACOVA_04618 at 15.743 kb on + strand, within BACOVA_04618 at 15.744 kb on - strand, within BACOVA_04618 at 15.747 kb on - strand, within BACOVA_04618 at 15.783 kb on + strand, within BACOVA_04618 at 15.815 kb on + strand, within BACOVA_04618 at 15.829 kb on + strand, within BACOVA_04618 at 15.829 kb on + strand, within BACOVA_04618 at 15.834 kb on + strand, within BACOVA_04618 at 15.853 kb on + strand, within BACOVA_04618 at 15.853 kb on + strand, within BACOVA_04618 at 15.854 kb on - strand, within BACOVA_04618 at 15.854 kb on - strand, within BACOVA_04618 at 15.896 kb on - strand, within BACOVA_04618 at 15.903 kb on - strand, within BACOVA_04618 at 15.911 kb on - strand, within BACOVA_04618 at 15.963 kb on - strand, within BACOVA_04618 at 15.963 kb on - strand, within BACOVA_04618 at 15.964 kb on + strand, within BACOVA_04618 at 15.966 kb on + strand, within BACOVA_04618 at 15.967 kb on - strand, within BACOVA_04618 at 15.967 kb on - strand, within BACOVA_04618 at 15.967 kb on - strand, within BACOVA_04618 at 15.967 kb on - strand, within BACOVA_04618 at 16.032 kb on - strand, within BACOVA_04618 at 16.037 kb on + strand, within BACOVA_04618 at 16.037 kb on + strand, within BACOVA_04618 at 16.038 kb on - strand, within BACOVA_04618 at 16.038 kb on - strand, within BACOVA_04618 at 16.038 kb on - strand, within BACOVA_04618 at 16.085 kb on + strand, within BACOVA_04618 at 16.103 kb on + strand, within BACOVA_04618 at 16.135 kb on + strand, within BACOVA_04618 at 16.142 kb on - strand, within BACOVA_04618 at 16.147 kb on - strand, within BACOVA_04618 at 16.158 kb on + strand, within BACOVA_04618 at 16.159 kb on - strand, within BACOVA_04618 at 16.193 kb on + strand, within BACOVA_04618 at 16.197 kb on + strand, within BACOVA_04618 at 16.207 kb on + strand, within BACOVA_04618 at 16.295 kb on - strand, within BACOVA_04618 at 16.324 kb on + strand, within BACOVA_04618 at 16.563 kb on + strand, within BACOVA_04618 at 16.594 kb on + strand, within BACOVA_04618 at 16.594 kb on + strand, within BACOVA_04618 at 16.612 kb on - strand at 16.613 kb on + strand at 16.614 kb on - strand at 16.614 kb on - strand at 16.616 kb on + strand at 16.617 kb on - strand at 16.654 kb on + strand at 16.660 kb on + strand at 16.660 kb on + strand at 16.660 kb on + strand at 16.661 kb on - strand at 16.686 kb on + strand at 16.686 kb on + strand at 16.687 kb on - strand at 16.687 kb on - strand at 16.696 kb on + strand at 16.697 kb on - strand at 16.702 kb on + strand at 16.703 kb on - strand at 16.703 kb on - strand at 16.703 kb on - strand at 16.919 kb on + strand at 16.933 kb on + strand at 16.933 kb on + strand at 17.020 kb on + strand at 17.021 kb on - strand at 17.024 kb on + strand at 17.082 kb on + strand at 17.153 kb on - strand at 17.162 kb on - strand at 17.162 kb on - strand at 17.164 kb on - strand at 17.334 kb on - strand, within BACOVA_04620 at 17.479 kb on - strand at 17.530 kb on - strand at 17.535 kb on + strand at 17.597 kb on + strand at 17.597 kb on + strand at 17.598 kb on - strand at 17.603 kb on + strand at 17.622 kb on + strand at 17.623 kb on - strand at 17.632 kb on + strand at 17.670 kb on + strand, within BACOVA_04621 at 17.680 kb on - strand, within BACOVA_04621 at 17.692 kb on - strand, within BACOVA_04621 at 17.701 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 14,513 - BACOVA_04616 0.17 +0.1 14,521 + BACOVA_04616 0.19 +0.3 14,552 - BACOVA_04616 0.24 +0.8 14,565 + BACOVA_04616 0.27 -0.6 14,582 - BACOVA_04616 0.30 +1.6 14,603 + BACOVA_04616 0.34 -2.5 14,604 - BACOVA_04616 0.34 +0.3 14,621 - BACOVA_04616 0.37 +0.2 14,622 + BACOVA_04616 0.37 -1.9 14,622 + BACOVA_04616 0.37 -0.2 14,634 - BACOVA_04616 0.39 -0.7 14,654 - BACOVA_04616 0.43 +0.1 14,654 - BACOVA_04616 0.43 -0.3 14,702 - BACOVA_04616 0.52 -0.8 14,736 - BACOVA_04616 0.58 -0.3 14,761 + BACOVA_04616 0.63 -0.9 14,798 + BACOVA_04616 0.70 +1.3 14,799 - BACOVA_04616 0.70 -1.4 14,941 + +0.3 14,941 + -0.9 14,942 - +0.9 14,960 + -0.1 14,961 - -0.7 15,146 - BACOVA_04617 0.40 +0.7 15,184 - BACOVA_04617 0.47 +0.1 15,207 + BACOVA_04617 0.51 -3.0 15,239 + BACOVA_04617 0.58 +1.4 15,250 - BACOVA_04617 0.60 -0.8 15,308 - BACOVA_04617 0.71 +0.8 15,308 - BACOVA_04617 0.71 -0.3 15,308 - BACOVA_04617 0.71 -0.1 15,330 + BACOVA_04617 0.75 -0.7 15,330 + BACOVA_04617 0.75 +0.1 15,330 + BACOVA_04617 0.75 -1.4 15,331 - BACOVA_04617 0.75 -0.3 15,346 - BACOVA_04617 0.78 -0.2 15,405 - BACOVA_04617 0.90 -0.4 15,405 - BACOVA_04617 0.90 -0.0 15,447 - -0.4 15,468 + +0.9 15,469 - -0.4 15,504 + -1.5 15,510 - +0.1 15,536 + +0.1 15,564 + +0.0 15,565 - -0.3 15,565 - -0.6 15,687 - BACOVA_04618 0.15 +0.1 15,687 - BACOVA_04618 0.15 -1.7 15,687 - BACOVA_04618 0.15 +0.1 15,692 - BACOVA_04618 0.15 -0.7 15,739 - BACOVA_04618 0.19 +1.1 15,739 - BACOVA_04618 0.19 -0.5 15,743 + BACOVA_04618 0.20 -1.5 15,743 + BACOVA_04618 0.20 -0.9 15,744 - BACOVA_04618 0.20 +0.7 15,747 - BACOVA_04618 0.20 -1.2 15,783 + BACOVA_04618 0.23 +0.2 15,815 + BACOVA_04618 0.26 -0.7 15,829 + BACOVA_04618 0.27 -0.2 15,829 + BACOVA_04618 0.27 -0.3 15,834 + BACOVA_04618 0.27 -2.3 15,853 + BACOVA_04618 0.29 -0.4 15,853 + BACOVA_04618 0.29 -0.6 15,854 - BACOVA_04618 0.29 -0.2 15,854 - BACOVA_04618 0.29 +1.1 15,896 - BACOVA_04618 0.32 -1.2 15,903 - BACOVA_04618 0.33 +0.0 15,911 - BACOVA_04618 0.33 -0.2 15,963 - BACOVA_04618 0.38 -0.6 15,963 - BACOVA_04618 0.38 -0.6 15,964 + BACOVA_04618 0.38 -0.7 15,966 + BACOVA_04618 0.38 -1.0 15,967 - BACOVA_04618 0.38 +0.0 15,967 - BACOVA_04618 0.38 +1.1 15,967 - BACOVA_04618 0.38 +0.5 15,967 - BACOVA_04618 0.38 -2.2 16,032 - BACOVA_04618 0.43 +0.9 16,037 + BACOVA_04618 0.44 +0.4 16,037 + BACOVA_04618 0.44 -0.5 16,038 - BACOVA_04618 0.44 -1.1 16,038 - BACOVA_04618 0.44 +0.5 16,038 - BACOVA_04618 0.44 -0.7 16,085 + BACOVA_04618 0.48 -0.4 16,103 + BACOVA_04618 0.49 -0.4 16,135 + BACOVA_04618 0.52 +0.6 16,142 - BACOVA_04618 0.52 -0.7 16,147 - BACOVA_04618 0.53 -0.5 16,158 + BACOVA_04618 0.54 +0.8 16,159 - BACOVA_04618 0.54 -1.2 16,193 + BACOVA_04618 0.57 -0.1 16,197 + BACOVA_04618 0.57 -0.2 16,207 + BACOVA_04618 0.58 -1.0 16,295 - BACOVA_04618 0.65 -0.5 16,324 + BACOVA_04618 0.67 +0.6 16,563 + BACOVA_04618 0.87 +0.4 16,594 + BACOVA_04618 0.89 +1.0 16,594 + BACOVA_04618 0.89 +0.8 16,612 - -0.6 16,613 + -0.4 16,614 - -0.3 16,614 - -1.0 16,616 + -0.3 16,617 - -0.9 16,654 + +0.1 16,660 + -1.0 16,660 + -0.9 16,660 + +0.0 16,661 - +0.4 16,686 + +1.1 16,686 + -0.5 16,687 - +0.0 16,687 - -0.2 16,696 + +0.1 16,697 - -0.0 16,702 + +0.1 16,703 - -0.7 16,703 - +0.9 16,703 - +0.3 16,919 + +0.4 16,933 + -0.4 16,933 + +0.8 17,020 + +1.0 17,021 - -0.9 17,024 + -1.3 17,082 + -0.2 17,153 - +0.1 17,162 - +0.2 17,162 - -0.6 17,164 - -0.9 17,334 - BACOVA_04620 0.41 -0.9 17,479 - +0.2 17,530 - -1.7 17,535 + -0.5 17,597 + -0.8 17,597 + -0.3 17,598 - +1.1 17,603 + -0.7 17,622 + +0.3 17,623 - +0.0 17,632 + -1.6 17,670 + BACOVA_04621 0.13 -1.0 17,680 - BACOVA_04621 0.14 -0.3 17,692 - BACOVA_04621 0.15 +0.4 17,701 - BACOVA_04621 0.15 -1.9 17,720 - BACOVA_04621 0.17 +1.7 17,720 - BACOVA_04621 0.17 -0.7 17,720 - BACOVA_04621 0.17 +0.5
Or see this region's nucleotide sequence