Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04047

Experiment: L-Rhamnose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04045 and BACOVA_04046 are separated by 69 nucleotidesBACOVA_04046 and BACOVA_04048 are separated by 17 nucleotidesBACOVA_04048 and BACOVA_04047 overlap by 25 nucleotidesBACOVA_04047 and BACOVA_04049 are separated by 178 nucleotides BACOVA_04045: BACOVA_04045 - TonB-dependent receptor, at 376,850 to 379,072 _04045 BACOVA_04046: BACOVA_04046 - heavy metal-associated domain protein, at 379,142 to 379,465 _04046 BACOVA_04048: BACOVA_04048 - hypothetical protein, at 379,483 to 379,587 _04048 BACOVA_04047: BACOVA_04047 - copper-exporting ATPase, at 379,563 to 381,773 _04047 BACOVA_04049: BACOVA_04049 - transcriptional regulator, AraC family, at 381,952 to 382,791 _04049 Position (kb) 379 380 381 382Strain fitness (log2 ratio) -2 -1 0 1 2 3at 378.711 kb on - strand, within BACOVA_04045at 378.810 kb on - strand, within BACOVA_04045at 378.927 kb on + strandat 379.064 kb on - strandat 379.071 kb on - strandat 379.108 kb on - strandat 379.111 kb on - strandat 379.191 kb on + strand, within BACOVA_04046at 379.228 kb on - strand, within BACOVA_04046at 379.232 kb on - strand, within BACOVA_04046at 379.282 kb on + strand, within BACOVA_04046at 379.310 kb on - strand, within BACOVA_04046at 379.350 kb on - strand, within BACOVA_04046at 379.371 kb on + strand, within BACOVA_04046at 379.372 kb on - strand, within BACOVA_04046at 379.372 kb on - strand, within BACOVA_04046at 379.396 kb on + strand, within BACOVA_04046at 379.476 kb on - strandat 379.555 kb on - strand, within BACOVA_04048at 379.556 kb on + strand, within BACOVA_04048at 379.556 kb on + strand, within BACOVA_04048at 379.560 kb on + strand, within BACOVA_04048at 379.561 kb on - strand, within BACOVA_04048at 379.563 kb on - strandat 379.563 kb on - strandat 379.598 kb on + strandat 379.598 kb on + strandat 379.600 kb on + strandat 379.601 kb on + strandat 379.676 kb on + strandat 379.691 kb on + strandat 379.691 kb on + strandat 379.692 kb on - strandat 379.765 kb on - strandat 379.765 kb on - strandat 379.820 kb on + strand, within BACOVA_04047at 379.821 kb on - strand, within BACOVA_04047at 379.827 kb on + strand, within BACOVA_04047at 379.828 kb on - strand, within BACOVA_04047at 379.870 kb on + strand, within BACOVA_04047at 379.873 kb on + strand, within BACOVA_04047at 379.885 kb on + strand, within BACOVA_04047at 379.886 kb on - strand, within BACOVA_04047at 379.914 kb on + strand, within BACOVA_04047at 379.920 kb on - strand, within BACOVA_04047at 379.936 kb on + strand, within BACOVA_04047at 380.000 kb on + strand, within BACOVA_04047at 380.006 kb on - strand, within BACOVA_04047at 380.006 kb on - strand, within BACOVA_04047at 380.018 kb on + strand, within BACOVA_04047at 380.024 kb on + strand, within BACOVA_04047at 380.039 kb on + strand, within BACOVA_04047at 380.040 kb on - strand, within BACOVA_04047at 380.042 kb on + strand, within BACOVA_04047at 380.042 kb on + strand, within BACOVA_04047at 380.128 kb on - strand, within BACOVA_04047at 380.148 kb on - strand, within BACOVA_04047at 380.148 kb on - strand, within BACOVA_04047at 380.217 kb on - strand, within BACOVA_04047at 380.336 kb on - strand, within BACOVA_04047at 380.370 kb on + strand, within BACOVA_04047at 380.371 kb on - strand, within BACOVA_04047at 380.430 kb on - strand, within BACOVA_04047at 380.516 kb on + strand, within BACOVA_04047at 380.577 kb on - strand, within BACOVA_04047at 380.659 kb on - strand, within BACOVA_04047at 380.659 kb on - strand, within BACOVA_04047at 380.660 kb on + strand, within BACOVA_04047at 380.661 kb on - strand, within BACOVA_04047at 380.668 kb on - strand, within BACOVA_04047at 380.730 kb on - strand, within BACOVA_04047at 380.730 kb on - strand, within BACOVA_04047at 380.756 kb on - strand, within BACOVA_04047at 380.759 kb on + strand, within BACOVA_04047at 380.777 kb on + strand, within BACOVA_04047at 380.778 kb on - strand, within BACOVA_04047at 380.821 kb on + strand, within BACOVA_04047at 380.822 kb on - strand, within BACOVA_04047at 380.871 kb on - strand, within BACOVA_04047at 380.871 kb on - strand, within BACOVA_04047at 380.923 kb on + strand, within BACOVA_04047at 380.923 kb on + strand, within BACOVA_04047at 380.924 kb on - strand, within BACOVA_04047at 380.970 kb on - strand, within BACOVA_04047at 380.970 kb on - strand, within BACOVA_04047at 381.071 kb on + strand, within BACOVA_04047at 381.071 kb on + strand, within BACOVA_04047at 381.071 kb on + strand, within BACOVA_04047at 381.072 kb on - strand, within BACOVA_04047at 381.072 kb on - strand, within BACOVA_04047at 381.072 kb on - strand, within BACOVA_04047at 381.072 kb on - strand, within BACOVA_04047at 381.093 kb on - strand, within BACOVA_04047at 381.180 kb on + strand, within BACOVA_04047at 381.291 kb on - strand, within BACOVA_04047at 381.380 kb on + strand, within BACOVA_04047at 381.443 kb on + strand, within BACOVA_04047at 381.506 kb on + strand, within BACOVA_04047at 381.507 kb on - strand, within BACOVA_04047at 381.512 kb on + strand, within BACOVA_04047at 381.525 kb on - strand, within BACOVA_04047at 381.551 kb on - strand, within BACOVA_04047at 381.627 kb on - strandat 381.631 kb on - strandat 381.631 kb on - strandat 381.651 kb on - strandat 381.785 kb on + strandat 381.810 kb on - strandat 381.835 kb on + strandat 381.925 kb on + strandat 381.926 kb on - strandat 381.934 kb on + strandat 381.953 kb on + strandat 381.985 kb on + strandat 381.986 kb on - strandat 381.989 kb on + strandat 381.989 kb on + strandat 382.040 kb on + strand, within BACOVA_04049at 382.040 kb on + strand, within BACOVA_04049at 382.041 kb on - strand, within BACOVA_04049at 382.045 kb on + strand, within BACOVA_04049at 382.046 kb on - strand, within BACOVA_04049at 382.056 kb on + strand, within BACOVA_04049at 382.062 kb on + strand, within BACOVA_04049at 382.063 kb on - strand, within BACOVA_04049at 382.098 kb on + strand, within BACOVA_04049at 382.099 kb on - strand, within BACOVA_04049at 382.104 kb on + strand, within BACOVA_04049at 382.105 kb on - strand, within BACOVA_04049at 382.106 kb on + strand, within BACOVA_04049at 382.106 kb on + strand, within BACOVA_04049at 382.106 kb on + strand, within BACOVA_04049at 382.107 kb on - strand, within BACOVA_04049at 382.107 kb on - strand, within BACOVA_04049at 382.107 kb on - strand, within BACOVA_04049at 382.107 kb on - strand, within BACOVA_04049at 382.160 kb on - strand, within BACOVA_04049at 382.160 kb on - strand, within BACOVA_04049at 382.174 kb on + strand, within BACOVA_04049at 382.174 kb on + strand, within BACOVA_04049at 382.175 kb on - strand, within BACOVA_04049at 382.177 kb on - strand, within BACOVA_04049at 382.180 kb on + strand, within BACOVA_04049at 382.180 kb on + strand, within BACOVA_04049at 382.186 kb on - strand, within BACOVA_04049at 382.304 kb on + strand, within BACOVA_04049at 382.305 kb on - strand, within BACOVA_04049at 382.305 kb on - strand, within BACOVA_04049at 382.305 kb on - strand, within BACOVA_04049at 382.307 kb on - strand, within BACOVA_04049at 382.307 kb on - strand, within BACOVA_04049at 382.307 kb on - strand, within BACOVA_04049at 382.307 kb on - strand, within BACOVA_04049at 382.307 kb on - strand, within BACOVA_04049at 382.315 kb on + strand, within BACOVA_04049at 382.315 kb on + strand, within BACOVA_04049at 382.316 kb on - strand, within BACOVA_04049at 382.409 kb on + strand, within BACOVA_04049at 382.410 kb on - strand, within BACOVA_04049at 382.440 kb on + strand, within BACOVA_04049at 382.441 kb on - strand, within BACOVA_04049at 382.463 kb on - strand, within BACOVA_04049at 382.463 kb on - strand, within BACOVA_04049at 382.482 kb on + strand, within BACOVA_04049at 382.550 kb on - strand, within BACOVA_04049at 382.595 kb on - strand, within BACOVA_04049at 382.626 kb on - strand, within BACOVA_04049at 382.626 kb on - strand, within BACOVA_04049at 382.666 kb on - strand, within BACOVA_04049at 382.680 kb on + strand, within BACOVA_04049at 382.680 kb on + strand, within BACOVA_04049at 382.681 kb on - strand, within BACOVA_04049at 382.710 kb on - strandat 382.732 kb on + strandat 382.733 kb on - strandat 382.766 kb on - strandat 382.768 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C)
remove
378,711 - BACOVA_04045 0.84 -0.3
378,810 - BACOVA_04045 0.88 +1.2
378,927 + -1.0
379,064 - -0.6
379,071 - -0.0
379,108 - -0.5
379,111 - +0.6
379,191 + BACOVA_04046 0.15 +0.4
379,228 - BACOVA_04046 0.27 -1.0
379,232 - BACOVA_04046 0.28 -0.8
379,282 + BACOVA_04046 0.43 -1.8
379,310 - BACOVA_04046 0.52 +0.7
379,350 - BACOVA_04046 0.64 -1.2
379,371 + BACOVA_04046 0.71 +1.0
379,372 - BACOVA_04046 0.71 -0.8
379,372 - BACOVA_04046 0.71 -0.1
379,396 + BACOVA_04046 0.78 -0.2
379,476 - -1.0
379,555 - BACOVA_04048 0.69 +0.7
379,556 + BACOVA_04048 0.70 +1.4
379,556 + BACOVA_04048 0.70 -0.0
379,560 + BACOVA_04048 0.73 -1.1
379,561 - BACOVA_04048 0.74 -0.2
379,563 - -0.7
379,563 - -0.0
379,598 + -0.4
379,598 + +1.0
379,600 + +0.3
379,601 + -0.8
379,676 + -1.0
379,691 + +1.2
379,691 + +0.4
379,692 - +0.5
379,765 - -0.7
379,765 - -0.2
379,820 + BACOVA_04047 0.12 +0.5
379,821 - BACOVA_04047 0.12 -0.0
379,827 + BACOVA_04047 0.12 -0.4
379,828 - BACOVA_04047 0.12 +0.6
379,870 + BACOVA_04047 0.14 -0.6
379,873 + BACOVA_04047 0.14 -1.1
379,885 + BACOVA_04047 0.15 -0.6
379,886 - BACOVA_04047 0.15 +2.6
379,914 + BACOVA_04047 0.16 -0.2
379,920 - BACOVA_04047 0.16 +0.2
379,936 + BACOVA_04047 0.17 -1.1
380,000 + BACOVA_04047 0.20 +0.2
380,006 - BACOVA_04047 0.20 -0.3
380,006 - BACOVA_04047 0.20 +0.5
380,018 + BACOVA_04047 0.21 -1.3
380,024 + BACOVA_04047 0.21 +1.7
380,039 + BACOVA_04047 0.22 -0.8
380,040 - BACOVA_04047 0.22 -0.7
380,042 + BACOVA_04047 0.22 +0.6
380,042 + BACOVA_04047 0.22 +0.7
380,128 - BACOVA_04047 0.26 -1.2
380,148 - BACOVA_04047 0.26 +1.0
380,148 - BACOVA_04047 0.26 +1.1
380,217 - BACOVA_04047 0.30 +0.7
380,336 - BACOVA_04047 0.35 -2.2
380,370 + BACOVA_04047 0.36 -0.8
380,371 - BACOVA_04047 0.37 +0.7
380,430 - BACOVA_04047 0.39 -0.2
380,516 + BACOVA_04047 0.43 +1.0
380,577 - BACOVA_04047 0.46 +1.3
380,659 - BACOVA_04047 0.50 +0.1
380,659 - BACOVA_04047 0.50 -0.0
380,660 + BACOVA_04047 0.50 -0.4
380,661 - BACOVA_04047 0.50 +0.2
380,668 - BACOVA_04047 0.50 -0.5
380,730 - BACOVA_04047 0.53 -0.3
380,730 - BACOVA_04047 0.53 -0.5
380,756 - BACOVA_04047 0.54 -1.3
380,759 + BACOVA_04047 0.54 -0.2
380,777 + BACOVA_04047 0.55 -0.6
380,778 - BACOVA_04047 0.55 -0.6
380,821 + BACOVA_04047 0.57 -0.0
380,822 - BACOVA_04047 0.57 +1.0
380,871 - BACOVA_04047 0.59 -0.3
380,871 - BACOVA_04047 0.59 -1.3
380,923 + BACOVA_04047 0.62 +0.6
380,923 + BACOVA_04047 0.62 +0.5
380,924 - BACOVA_04047 0.62 -0.4
380,970 - BACOVA_04047 0.64 +0.6
380,970 - BACOVA_04047 0.64 -0.3
381,071 + BACOVA_04047 0.68 +0.6
381,071 + BACOVA_04047 0.68 +0.8
381,071 + BACOVA_04047 0.68 -0.7
381,072 - BACOVA_04047 0.68 +0.7
381,072 - BACOVA_04047 0.68 -0.6
381,072 - BACOVA_04047 0.68 -2.2
381,072 - BACOVA_04047 0.68 +0.0
381,093 - BACOVA_04047 0.69 +1.0
381,180 + BACOVA_04047 0.73 +1.0
381,291 - BACOVA_04047 0.78 -0.0
381,380 + BACOVA_04047 0.82 -2.0
381,443 + BACOVA_04047 0.85 +1.4
381,506 + BACOVA_04047 0.88 -0.6
381,507 - BACOVA_04047 0.88 +2.0
381,512 + BACOVA_04047 0.88 -0.5
381,525 - BACOVA_04047 0.89 -0.0
381,551 - BACOVA_04047 0.90 +0.5
381,627 - -1.6
381,631 - -0.3
381,631 - +1.0
381,651 - +0.3
381,785 + +0.6
381,810 - -0.0
381,835 + +0.3
381,925 + +0.8
381,926 - -0.6
381,934 + +0.2
381,953 + +2.0
381,985 + -0.5
381,986 - +0.2
381,989 + +0.2
381,989 + -0.7
382,040 + BACOVA_04049 0.10 -0.6
382,040 + BACOVA_04049 0.10 -0.9
382,041 - BACOVA_04049 0.11 -2.3
382,045 + BACOVA_04049 0.11 -0.1
382,046 - BACOVA_04049 0.11 -1.0
382,056 + BACOVA_04049 0.12 -1.0
382,062 + BACOVA_04049 0.13 -0.7
382,063 - BACOVA_04049 0.13 +0.6
382,098 + BACOVA_04049 0.17 -1.0
382,099 - BACOVA_04049 0.17 -0.3
382,104 + BACOVA_04049 0.18 -0.6
382,105 - BACOVA_04049 0.18 -0.9
382,106 + BACOVA_04049 0.18 -0.0
382,106 + BACOVA_04049 0.18 -0.3
382,106 + BACOVA_04049 0.18 -0.2
382,107 - BACOVA_04049 0.18 +0.1
382,107 - BACOVA_04049 0.18 -0.0
382,107 - BACOVA_04049 0.18 +0.3
382,107 - BACOVA_04049 0.18 +1.8
382,160 - BACOVA_04049 0.25 -0.3
382,160 - BACOVA_04049 0.25 +0.6
382,174 + BACOVA_04049 0.26 +0.2
382,174 + BACOVA_04049 0.26 +2.0
382,175 - BACOVA_04049 0.27 +0.3
382,177 - BACOVA_04049 0.27 -0.7
382,180 + BACOVA_04049 0.27 -0.0
382,180 + BACOVA_04049 0.27 -0.5
382,186 - BACOVA_04049 0.28 -0.3
382,304 + BACOVA_04049 0.42 +0.8
382,305 - BACOVA_04049 0.42 +0.3
382,305 - BACOVA_04049 0.42 -1.8
382,305 - BACOVA_04049 0.42 -0.4
382,307 - BACOVA_04049 0.42 -0.6
382,307 - BACOVA_04049 0.42 -0.6
382,307 - BACOVA_04049 0.42 -1.8
382,307 - BACOVA_04049 0.42 -0.0
382,307 - BACOVA_04049 0.42 +0.3
382,315 + BACOVA_04049 0.43 -1.6
382,315 + BACOVA_04049 0.43 +1.0
382,316 - BACOVA_04049 0.43 -0.0
382,409 + BACOVA_04049 0.54 +0.7
382,410 - BACOVA_04049 0.55 -2.0
382,440 + BACOVA_04049 0.58 -1.7
382,441 - BACOVA_04049 0.58 +0.6
382,463 - BACOVA_04049 0.61 -1.0
382,463 - BACOVA_04049 0.61 -0.7
382,482 + BACOVA_04049 0.63 +0.3
382,550 - BACOVA_04049 0.71 +3.0
382,595 - BACOVA_04049 0.77 +0.3
382,626 - BACOVA_04049 0.80 -0.5
382,626 - BACOVA_04049 0.80 +0.0
382,666 - BACOVA_04049 0.85 +0.9
382,680 + BACOVA_04049 0.87 -0.0
382,680 + BACOVA_04049 0.87 +0.3
382,681 - BACOVA_04049 0.87 -1.5
382,710 - -0.8
382,732 + -0.0
382,733 - -1.3
382,766 - -0.0
382,768 + +0.2

Or see this region's nucleotide sequence