Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02975 and BACOVA_02976 are separated by 111 nucleotides BACOVA_02976 and BACOVA_02977 are separated by 115 nucleotides BACOVA_02977 and BACOVA_02978 are separated by 31 nucleotides BACOVA_02978 and BACOVA_02979 are separated by 18 nucleotides
BACOVA_02975: BACOVA_02975 - trehalose-phosphatase, at 52,791 to 55,064
_02975
BACOVA_02976: BACOVA_02976 - hypothetical protein, at 55,176 to 55,364
_02976
BACOVA_02977: BACOVA_02977 - putative K+-transporting ATPase, F subunit, at 55,480 to 55,593
_02977
BACOVA_02978: BACOVA_02978 - K+-transporting ATPase, A subunit, at 55,625 to 57,331
_02978
BACOVA_02979: BACOVA_02979 - K+-transporting ATPase, B subunit, at 57,350 to 59,383
_02979
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 54.634 kb on - strand, within BACOVA_02975 at 54.640 kb on - strand, within BACOVA_02975 at 54.725 kb on + strand, within BACOVA_02975 at 54.726 kb on - strand, within BACOVA_02975 at 54.728 kb on - strand, within BACOVA_02975 at 54.728 kb on - strand, within BACOVA_02975 at 54.730 kb on - strand, within BACOVA_02975 at 54.734 kb on + strand, within BACOVA_02975 at 54.734 kb on + strand, within BACOVA_02975 at 54.735 kb on - strand, within BACOVA_02975 at 54.735 kb on - strand, within BACOVA_02975 at 54.736 kb on + strand, within BACOVA_02975 at 54.737 kb on - strand, within BACOVA_02975 at 54.737 kb on - strand, within BACOVA_02975 at 54.737 kb on - strand, within BACOVA_02975 at 54.742 kb on + strand, within BACOVA_02975 at 54.749 kb on - strand, within BACOVA_02975 at 54.768 kb on - strand, within BACOVA_02975 at 54.768 kb on - strand, within BACOVA_02975 at 54.770 kb on + strand, within BACOVA_02975 at 54.770 kb on + strand, within BACOVA_02975 at 54.776 kb on + strand, within BACOVA_02975 at 54.776 kb on + strand, within BACOVA_02975 at 54.777 kb on - strand, within BACOVA_02975 at 54.892 kb on - strand at 54.906 kb on + strand at 54.907 kb on - strand at 55.015 kb on - strand at 55.028 kb on + strand at 55.029 kb on - strand at 55.032 kb on - strand at 55.032 kb on - strand at 55.044 kb on - strand at 55.064 kb on + strand at 55.065 kb on - strand at 55.065 kb on - strand at 55.122 kb on - strand at 55.182 kb on - strand at 55.212 kb on - strand, within BACOVA_02976 at 55.229 kb on - strand, within BACOVA_02976 at 55.256 kb on - strand, within BACOVA_02976 at 55.269 kb on - strand, within BACOVA_02976 at 55.269 kb on - strand, within BACOVA_02976 at 55.374 kb on - strand at 55.411 kb on + strand at 55.432 kb on + strand at 55.513 kb on - strand, within BACOVA_02977 at 55.517 kb on - strand, within BACOVA_02977 at 55.517 kb on - strand, within BACOVA_02977 at 55.517 kb on - strand, within BACOVA_02977 at 55.533 kb on - strand, within BACOVA_02977 at 55.564 kb on + strand, within BACOVA_02977 at 55.565 kb on - strand, within BACOVA_02977 at 55.565 kb on - strand, within BACOVA_02977 at 55.565 kb on - strand, within BACOVA_02977 at 55.616 kb on - strand at 55.622 kb on + strand at 55.622 kb on + strand at 55.623 kb on - strand at 55.624 kb on + strand at 55.631 kb on - strand at 55.659 kb on + strand at 55.706 kb on - strand at 55.706 kb on - strand at 55.769 kb on - strand at 55.769 kb on - strand at 55.867 kb on - strand, within BACOVA_02978 at 55.940 kb on - strand, within BACOVA_02978 at 55.942 kb on + strand, within BACOVA_02978 at 55.951 kb on + strand, within BACOVA_02978 at 55.958 kb on - strand, within BACOVA_02978 at 55.982 kb on + strand, within BACOVA_02978 at 55.983 kb on - strand, within BACOVA_02978 at 55.984 kb on + strand, within BACOVA_02978 at 55.984 kb on + strand, within BACOVA_02978 at 56.006 kb on + strand, within BACOVA_02978 at 56.045 kb on - strand, within BACOVA_02978 at 56.063 kb on - strand, within BACOVA_02978 at 56.063 kb on - strand, within BACOVA_02978 at 56.080 kb on + strand, within BACOVA_02978 at 56.080 kb on + strand, within BACOVA_02978 at 56.080 kb on + strand, within BACOVA_02978 at 56.084 kb on - strand, within BACOVA_02978 at 56.092 kb on + strand, within BACOVA_02978 at 56.146 kb on - strand, within BACOVA_02978 at 56.146 kb on - strand, within BACOVA_02978 at 56.153 kb on - strand, within BACOVA_02978 at 56.159 kb on - strand, within BACOVA_02978 at 56.163 kb on + strand, within BACOVA_02978 at 56.231 kb on - strand, within BACOVA_02978 at 56.242 kb on - strand, within BACOVA_02978 at 56.245 kb on + strand, within BACOVA_02978 at 56.246 kb on - strand, within BACOVA_02978 at 56.285 kb on - strand, within BACOVA_02978 at 56.285 kb on - strand, within BACOVA_02978 at 56.333 kb on + strand, within BACOVA_02978 at 56.333 kb on + strand, within BACOVA_02978 at 56.334 kb on - strand, within BACOVA_02978 at 56.372 kb on - strand, within BACOVA_02978 at 56.376 kb on - strand, within BACOVA_02978 at 56.376 kb on - strand, within BACOVA_02978 at 56.376 kb on - strand, within BACOVA_02978 at 56.430 kb on + strand, within BACOVA_02978 at 56.431 kb on - strand, within BACOVA_02978 at 56.448 kb on - strand, within BACOVA_02978 at 56.476 kb on + strand, within BACOVA_02978 at 56.488 kb on - strand, within BACOVA_02978 at 56.488 kb on - strand, within BACOVA_02978 at 56.518 kb on + strand, within BACOVA_02978 at 56.522 kb on - strand, within BACOVA_02978 at 56.522 kb on - strand, within BACOVA_02978 at 56.680 kb on + strand, within BACOVA_02978 at 56.693 kb on - strand, within BACOVA_02978 at 56.695 kb on + strand, within BACOVA_02978 at 56.729 kb on - strand, within BACOVA_02978 at 56.738 kb on - strand, within BACOVA_02978 at 56.738 kb on - strand, within BACOVA_02978 at 56.777 kb on + strand, within BACOVA_02978 at 56.777 kb on + strand, within BACOVA_02978 at 56.778 kb on - strand, within BACOVA_02978 at 56.778 kb on - strand, within BACOVA_02978 at 56.782 kb on + strand, within BACOVA_02978 at 56.783 kb on - strand, within BACOVA_02978 at 56.783 kb on - strand, within BACOVA_02978 at 56.783 kb on - strand, within BACOVA_02978 at 56.783 kb on - strand, within BACOVA_02978 at 56.783 kb on - strand, within BACOVA_02978 at 56.889 kb on + strand, within BACOVA_02978 at 56.910 kb on + strand, within BACOVA_02978 at 56.939 kb on + strand, within BACOVA_02978 at 56.946 kb on - strand, within BACOVA_02978 at 56.946 kb on - strand, within BACOVA_02978 at 56.993 kb on - strand, within BACOVA_02978 at 56.993 kb on - strand, within BACOVA_02978 at 57.027 kb on - strand, within BACOVA_02978 at 57.032 kb on + strand, within BACOVA_02978 at 57.033 kb on - strand, within BACOVA_02978 at 57.082 kb on + strand, within BACOVA_02978 at 57.083 kb on - strand, within BACOVA_02978 at 57.085 kb on + strand, within BACOVA_02978 at 57.171 kb on + strand at 57.172 kb on - strand at 57.191 kb on - strand at 57.304 kb on + strand at 57.349 kb on + strand at 57.359 kb on - strand at 57.362 kb on - strand at 57.394 kb on - strand at 57.464 kb on - strand at 57.487 kb on + strand at 57.506 kb on + strand at 57.506 kb on + strand at 57.506 kb on + strand at 57.507 kb on - strand at 57.511 kb on + strand at 57.517 kb on - strand at 57.517 kb on - strand at 57.547 kb on + strand at 57.548 kb on - strand at 57.548 kb on - strand at 57.549 kb on - strand at 57.559 kb on + strand, within BACOVA_02979 at 57.560 kb on - strand, within BACOVA_02979 at 57.571 kb on + strand, within BACOVA_02979 at 57.572 kb on - strand, within BACOVA_02979 at 57.573 kb on + strand, within BACOVA_02979 at 57.574 kb on - strand, within BACOVA_02979 at 57.604 kb on + strand, within BACOVA_02979 at 57.605 kb on - strand, within BACOVA_02979 at 57.642 kb on + strand, within BACOVA_02979 at 57.642 kb on + strand, within BACOVA_02979 at 57.642 kb on + strand, within BACOVA_02979 at 57.642 kb on + strand, within BACOVA_02979 at 57.646 kb on + strand, within BACOVA_02979 at 57.647 kb on - strand, within BACOVA_02979 at 57.688 kb on + strand, within BACOVA_02979 at 57.700 kb on + strand, within BACOVA_02979 at 57.732 kb on + strand, within BACOVA_02979 at 57.733 kb on - strand, within BACOVA_02979 at 57.733 kb on - strand, within BACOVA_02979 at 57.733 kb on - strand, within BACOVA_02979 at 57.814 kb on + strand, within BACOVA_02979 at 57.899 kb on - strand, within BACOVA_02979 at 57.900 kb on + strand, within BACOVA_02979 at 57.900 kb on + strand, within BACOVA_02979 at 57.900 kb on + strand, within BACOVA_02979 at 57.900 kb on + strand, within BACOVA_02979 at 57.901 kb on - strand, within BACOVA_02979 at 58.025 kb on - strand, within BACOVA_02979 at 58.075 kb on + strand, within BACOVA_02979 at 58.075 kb on + strand, within BACOVA_02979 at 58.076 kb on - strand, within BACOVA_02979 at 58.076 kb on - strand, within BACOVA_02979 at 58.076 kb on - strand, within BACOVA_02979 at 58.138 kb on + strand, within BACOVA_02979 at 58.138 kb on + strand, within BACOVA_02979 at 58.139 kb on - strand, within BACOVA_02979 at 58.165 kb on + strand, within BACOVA_02979 at 58.175 kb on - strand, within BACOVA_02979 at 58.196 kb on - strand, within BACOVA_02979 at 58.225 kb on - strand, within BACOVA_02979 at 58.247 kb on - strand, within BACOVA_02979 at 58.251 kb on + strand, within BACOVA_02979 at 58.273 kb on + strand, within BACOVA_02979 at 58.274 kb on - strand, within BACOVA_02979 at 58.274 kb on - strand, within BACOVA_02979 at 58.276 kb on + strand, within BACOVA_02979 at 58.329 kb on + strand, within BACOVA_02979
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 54,634 - BACOVA_02975 0.81 +0.0 54,640 - BACOVA_02975 0.81 -0.7 54,725 + BACOVA_02975 0.85 -0.2 54,726 - BACOVA_02975 0.85 -0.2 54,728 - BACOVA_02975 0.85 -0.5 54,728 - BACOVA_02975 0.85 -0.1 54,730 - BACOVA_02975 0.85 -1.5 54,734 + BACOVA_02975 0.85 -2.6 54,734 + BACOVA_02975 0.85 -1.6 54,735 - BACOVA_02975 0.85 -1.4 54,735 - BACOVA_02975 0.85 -0.1 54,736 + BACOVA_02975 0.86 -1.0 54,737 - BACOVA_02975 0.86 -0.5 54,737 - BACOVA_02975 0.86 -0.5 54,737 - BACOVA_02975 0.86 -3.5 54,742 + BACOVA_02975 0.86 -0.4 54,749 - BACOVA_02975 0.86 +0.2 54,768 - BACOVA_02975 0.87 -1.3 54,768 - BACOVA_02975 0.87 +0.4 54,770 + BACOVA_02975 0.87 -0.7 54,770 + BACOVA_02975 0.87 +0.2 54,776 + BACOVA_02975 0.87 -0.9 54,776 + BACOVA_02975 0.87 +0.4 54,777 - BACOVA_02975 0.87 +0.3 54,892 - -1.6 54,906 + -1.6 54,907 - -0.8 55,015 - -0.0 55,028 + -0.7 55,029 - -0.4 55,032 - +0.6 55,032 - -0.7 55,044 - -1.5 55,064 + -0.0 55,065 - +0.2 55,065 - +0.3 55,122 - +0.4 55,182 - +0.3 55,212 - BACOVA_02976 0.19 +0.4 55,229 - BACOVA_02976 0.28 +2.0 55,256 - BACOVA_02976 0.42 +0.4 55,269 - BACOVA_02976 0.49 +1.3 55,269 - BACOVA_02976 0.49 -1.0 55,374 - -0.0 55,411 + -0.4 55,432 + -1.0 55,513 - BACOVA_02977 0.29 +0.3 55,517 - BACOVA_02977 0.32 -1.6 55,517 - BACOVA_02977 0.32 +0.2 55,517 - BACOVA_02977 0.32 +0.6 55,533 - BACOVA_02977 0.46 +1.0 55,564 + BACOVA_02977 0.74 +0.2 55,565 - BACOVA_02977 0.75 -0.1 55,565 - BACOVA_02977 0.75 +1.2 55,565 - BACOVA_02977 0.75 +0.3 55,616 - -0.6 55,622 + +0.1 55,622 + -1.4 55,623 - +1.3 55,624 + -0.1 55,631 - +1.5 55,659 + +0.4 55,706 - -0.8 55,706 - +0.5 55,769 - -0.5 55,769 - -0.3 55,867 - BACOVA_02978 0.14 -0.3 55,940 - BACOVA_02978 0.18 -0.2 55,942 + BACOVA_02978 0.19 +1.2 55,951 + BACOVA_02978 0.19 -0.6 55,958 - BACOVA_02978 0.20 +0.4 55,982 + BACOVA_02978 0.21 -0.8 55,983 - BACOVA_02978 0.21 -0.1 55,984 + BACOVA_02978 0.21 +1.8 55,984 + BACOVA_02978 0.21 +0.8 56,006 + BACOVA_02978 0.22 -1.1 56,045 - BACOVA_02978 0.25 -0.0 56,063 - BACOVA_02978 0.26 -0.4 56,063 - BACOVA_02978 0.26 +0.4 56,080 + BACOVA_02978 0.27 -0.3 56,080 + BACOVA_02978 0.27 +0.7 56,080 + BACOVA_02978 0.27 +0.2 56,084 - BACOVA_02978 0.27 +0.1 56,092 + BACOVA_02978 0.27 +0.2 56,146 - BACOVA_02978 0.31 -1.7 56,146 - BACOVA_02978 0.31 +1.2 56,153 - BACOVA_02978 0.31 -0.0 56,159 - BACOVA_02978 0.31 -0.1 56,163 + BACOVA_02978 0.32 +1.8 56,231 - BACOVA_02978 0.36 +0.6 56,242 - BACOVA_02978 0.36 +0.2 56,245 + BACOVA_02978 0.36 +0.5 56,246 - BACOVA_02978 0.36 -1.1 56,285 - BACOVA_02978 0.39 +0.2 56,285 - BACOVA_02978 0.39 -2.9 56,333 + BACOVA_02978 0.41 +0.8 56,333 + BACOVA_02978 0.41 +3.2 56,334 - BACOVA_02978 0.42 -0.5 56,372 - BACOVA_02978 0.44 -1.3 56,376 - BACOVA_02978 0.44 +0.3 56,376 - BACOVA_02978 0.44 +0.1 56,376 - BACOVA_02978 0.44 -0.4 56,430 + BACOVA_02978 0.47 +1.2 56,431 - BACOVA_02978 0.47 +0.8 56,448 - BACOVA_02978 0.48 +2.0 56,476 + BACOVA_02978 0.50 -0.8 56,488 - BACOVA_02978 0.51 -1.6 56,488 - BACOVA_02978 0.51 -0.1 56,518 + BACOVA_02978 0.52 +0.4 56,522 - BACOVA_02978 0.53 +0.2 56,522 - BACOVA_02978 0.53 -1.1 56,680 + BACOVA_02978 0.62 -1.4 56,693 - BACOVA_02978 0.63 +0.1 56,695 + BACOVA_02978 0.63 +0.9 56,729 - BACOVA_02978 0.65 -0.1 56,738 - BACOVA_02978 0.65 -2.2 56,738 - BACOVA_02978 0.65 -0.8 56,777 + BACOVA_02978 0.67 -2.1 56,777 + BACOVA_02978 0.67 +0.1 56,778 - BACOVA_02978 0.68 -0.4 56,778 - BACOVA_02978 0.68 -1.9 56,782 + BACOVA_02978 0.68 -0.2 56,783 - BACOVA_02978 0.68 +1.8 56,783 - BACOVA_02978 0.68 -0.2 56,783 - BACOVA_02978 0.68 +0.1 56,783 - BACOVA_02978 0.68 -0.5 56,783 - BACOVA_02978 0.68 +0.5 56,889 + BACOVA_02978 0.74 -0.4 56,910 + BACOVA_02978 0.75 -0.2 56,939 + BACOVA_02978 0.77 +0.2 56,946 - BACOVA_02978 0.77 -0.1 56,946 - BACOVA_02978 0.77 -0.4 56,993 - BACOVA_02978 0.80 +0.7 56,993 - BACOVA_02978 0.80 -0.6 57,027 - BACOVA_02978 0.82 +0.4 57,032 + BACOVA_02978 0.82 +0.2 57,033 - BACOVA_02978 0.82 +0.6 57,082 + BACOVA_02978 0.85 +0.1 57,083 - BACOVA_02978 0.85 +0.0 57,085 + BACOVA_02978 0.86 -0.4 57,171 + +1.5 57,172 - +0.0 57,191 - +0.4 57,304 + +1.8 57,349 + -1.6 57,359 - -0.1 57,362 - -0.8 57,394 - +0.3 57,464 - +1.2 57,487 + -0.6 57,506 + -1.3 57,506 + +0.4 57,506 + +0.3 57,507 - -0.3 57,511 + -0.1 57,517 - +0.8 57,517 - +0.6 57,547 + +1.0 57,548 - -0.9 57,548 - -0.8 57,549 - -2.6 57,559 + BACOVA_02979 0.10 +0.2 57,560 - BACOVA_02979 0.10 -0.1 57,571 + BACOVA_02979 0.11 -0.1 57,572 - BACOVA_02979 0.11 -0.5 57,573 + BACOVA_02979 0.11 -0.1 57,574 - BACOVA_02979 0.11 +0.3 57,604 + BACOVA_02979 0.12 +0.3 57,605 - BACOVA_02979 0.13 -0.8 57,642 + BACOVA_02979 0.14 -0.4 57,642 + BACOVA_02979 0.14 -0.7 57,642 + BACOVA_02979 0.14 -0.3 57,642 + BACOVA_02979 0.14 +0.1 57,646 + BACOVA_02979 0.15 -1.5 57,647 - BACOVA_02979 0.15 +1.6 57,688 + BACOVA_02979 0.17 -2.0 57,700 + BACOVA_02979 0.17 +0.7 57,732 + BACOVA_02979 0.19 -1.5 57,733 - BACOVA_02979 0.19 -0.8 57,733 - BACOVA_02979 0.19 +0.2 57,733 - BACOVA_02979 0.19 +0.1 57,814 + BACOVA_02979 0.23 -0.3 57,899 - BACOVA_02979 0.27 -0.8 57,900 + BACOVA_02979 0.27 +0.6 57,900 + BACOVA_02979 0.27 -0.9 57,900 + BACOVA_02979 0.27 -0.1 57,900 + BACOVA_02979 0.27 +0.8 57,901 - BACOVA_02979 0.27 -1.4 58,025 - BACOVA_02979 0.33 -0.1 58,075 + BACOVA_02979 0.36 -1.4 58,075 + BACOVA_02979 0.36 +0.5 58,076 - BACOVA_02979 0.36 +2.2 58,076 - BACOVA_02979 0.36 -1.1 58,076 - BACOVA_02979 0.36 -2.5 58,138 + BACOVA_02979 0.39 +1.2 58,138 + BACOVA_02979 0.39 +0.3 58,139 - BACOVA_02979 0.39 -0.8 58,165 + BACOVA_02979 0.40 +1.4 58,175 - BACOVA_02979 0.41 -0.7 58,196 - BACOVA_02979 0.42 -0.1 58,225 - BACOVA_02979 0.43 -0.4 58,247 - BACOVA_02979 0.44 +0.1 58,251 + BACOVA_02979 0.44 -0.4 58,273 + BACOVA_02979 0.45 +0.3 58,274 - BACOVA_02979 0.45 +0.2 58,274 - BACOVA_02979 0.45 -0.6 58,276 + BACOVA_02979 0.46 -0.9 58,329 + BACOVA_02979 0.48 -0.8
Or see this region's nucleotide sequence