Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02612 and BACOVA_02613 are separated by 76 nucleotides BACOVA_02613 and BACOVA_02614 overlap by 13 nucleotides BACOVA_02614 and BACOVA_02615 are separated by 216 nucleotides BACOVA_02615 and BACOVA_02616 are separated by 75 nucleotides
BACOVA_02612: BACOVA_02612 - DNA-binding helix-turn-helix protein, at 381,934 to 382,404
_02612
BACOVA_02613: BACOVA_02613 - oxidoreductase NAD-binding domain protein, at 382,481 to 383,257
_02613
BACOVA_02614: BACOVA_02614 - dihydroorotate dehydrogenase 1B, at 383,245 to 384,156
_02614
BACOVA_02615: BACOVA_02615 - tRNA (guanine-N(1)-)-methyltransferase, at 384,373 to 385,050
_02615
BACOVA_02616: BACOVA_02616 - DNA ligase (NAD+), at 385,126 to 387,126
_02616
Position (kb) 383
384
385 Strain fitness (log2 ratio) -2
-1
0
1 at 382.478 kb on + strand at 384.467 kb on - strand, within BACOVA_02615 at 384.495 kb on - strand, within BACOVA_02615 at 384.510 kb on + strand, within BACOVA_02615 at 384.511 kb on - strand, within BACOVA_02615 at 384.512 kb on + strand, within BACOVA_02615 at 384.513 kb on - strand, within BACOVA_02615 at 384.515 kb on - strand, within BACOVA_02615 at 384.515 kb on - strand, within BACOVA_02615 at 384.644 kb on - strand, within BACOVA_02615 at 384.644 kb on - strand, within BACOVA_02615 at 384.648 kb on - strand, within BACOVA_02615 at 384.708 kb on + strand, within BACOVA_02615 at 384.801 kb on + strand, within BACOVA_02615 at 384.852 kb on + strand, within BACOVA_02615 at 384.897 kb on - strand, within BACOVA_02615 at 384.953 kb on - strand, within BACOVA_02615 at 384.953 kb on - strand, within BACOVA_02615 at 385.036 kb on - strand at 385.090 kb on + strand at 385.125 kb on + strand at 385.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 382,478 + -0.5 384,467 - BACOVA_02615 0.14 -0.8 384,495 - BACOVA_02615 0.18 -1.4 384,510 + BACOVA_02615 0.20 -0.4 384,511 - BACOVA_02615 0.20 -1.7 384,512 + BACOVA_02615 0.21 -2.6 384,513 - BACOVA_02615 0.21 -0.0 384,515 - BACOVA_02615 0.21 -1.2 384,515 - BACOVA_02615 0.21 -0.0 384,644 - BACOVA_02615 0.40 -1.5 384,644 - BACOVA_02615 0.40 -2.3 384,648 - BACOVA_02615 0.41 -1.0 384,708 + BACOVA_02615 0.49 -1.4 384,801 + BACOVA_02615 0.63 -0.6 384,852 + BACOVA_02615 0.71 -2.0 384,897 - BACOVA_02615 0.77 -2.4 384,953 - BACOVA_02615 0.86 -0.9 384,953 - BACOVA_02615 0.86 -1.5 385,036 - -0.0 385,090 + +0.1 385,125 + -0.3 385,125 + +0.9
Or see this region's nucleotide sequence