Experiment: L-Rhamnose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02031 and BACOVA_02032 are separated by 7 nucleotides BACOVA_02032 and BACOVA_02033 are separated by 92 nucleotides BACOVA_02033 and BACOVA_02034 are separated by 13 nucleotides BACOVA_02034 and BACOVA_02035 are separated by 7 nucleotides
BACOVA_02031: BACOVA_02031 - inositol monophosphatase family protein, at 334,453 to 335,256
_02031
BACOVA_02032: BACOVA_02032 - hypothetical protein, at 335,264 to 335,404
_02032
BACOVA_02033: BACOVA_02033 - hypothetical protein, at 335,497 to 337,026
_02033
BACOVA_02034: BACOVA_02034 - hypothetical protein, at 337,040 to 337,819
_02034
BACOVA_02035: BACOVA_02035 - endonuclease/exonuclease/phosphatase family protein, at 337,827 to 338,600
_02035
Position (kb) 335
336
337
338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 334.527 kb on + strand at 334.528 kb on - strand at 334.528 kb on - strand at 334.528 kb on - strand at 334.670 kb on + strand, within BACOVA_02031 at 334.671 kb on - strand, within BACOVA_02031 at 334.708 kb on - strand, within BACOVA_02031 at 334.725 kb on - strand, within BACOVA_02031 at 334.760 kb on + strand, within BACOVA_02031 at 334.775 kb on + strand, within BACOVA_02031 at 334.882 kb on + strand, within BACOVA_02031 at 334.901 kb on + strand, within BACOVA_02031 at 334.901 kb on + strand, within BACOVA_02031 at 334.936 kb on + strand, within BACOVA_02031 at 334.937 kb on - strand, within BACOVA_02031 at 334.975 kb on - strand, within BACOVA_02031 at 334.975 kb on - strand, within BACOVA_02031 at 334.976 kb on + strand, within BACOVA_02031 at 334.976 kb on + strand, within BACOVA_02031 at 334.977 kb on - strand, within BACOVA_02031 at 335.015 kb on + strand, within BACOVA_02031 at 335.030 kb on + strand, within BACOVA_02031 at 335.083 kb on - strand, within BACOVA_02031 at 335.083 kb on - strand, within BACOVA_02031 at 335.124 kb on - strand, within BACOVA_02031 at 335.124 kb on - strand, within BACOVA_02031 at 335.132 kb on + strand, within BACOVA_02031 at 335.132 kb on + strand, within BACOVA_02031 at 335.133 kb on - strand, within BACOVA_02031 at 335.133 kb on - strand, within BACOVA_02031 at 335.224 kb on + strand at 335.235 kb on + strand at 335.235 kb on + strand at 335.236 kb on - strand at 335.259 kb on - strand at 335.356 kb on + strand, within BACOVA_02032 at 335.380 kb on + strand, within BACOVA_02032 at 335.380 kb on + strand, within BACOVA_02032 at 335.381 kb on - strand, within BACOVA_02032 at 335.381 kb on - strand, within BACOVA_02032 at 335.384 kb on + strand, within BACOVA_02032 at 335.385 kb on + strand, within BACOVA_02032 at 335.396 kb on + strand at 335.423 kb on + strand at 335.458 kb on - strand at 335.482 kb on + strand at 335.483 kb on - strand at 335.489 kb on + strand at 335.492 kb on + strand at 335.492 kb on + strand at 335.493 kb on - strand at 335.529 kb on + strand at 335.530 kb on - strand at 335.530 kb on - strand at 335.537 kb on + strand at 335.609 kb on - strand at 335.620 kb on - strand at 335.625 kb on + strand at 335.626 kb on - strand at 335.629 kb on + strand at 335.630 kb on - strand at 335.634 kb on + strand at 335.634 kb on + strand at 335.650 kb on + strand, within BACOVA_02033 at 335.651 kb on - strand, within BACOVA_02033 at 335.677 kb on - strand, within BACOVA_02033 at 335.697 kb on - strand, within BACOVA_02033 at 335.712 kb on + strand, within BACOVA_02033 at 335.724 kb on + strand, within BACOVA_02033 at 335.725 kb on - strand, within BACOVA_02033 at 335.725 kb on - strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.740 kb on + strand, within BACOVA_02033 at 335.802 kb on + strand, within BACOVA_02033 at 335.817 kb on + strand, within BACOVA_02033 at 335.817 kb on + strand, within BACOVA_02033 at 335.818 kb on - strand, within BACOVA_02033 at 335.821 kb on + strand, within BACOVA_02033 at 335.834 kb on - strand, within BACOVA_02033 at 335.892 kb on + strand, within BACOVA_02033 at 335.892 kb on + strand, within BACOVA_02033 at 335.905 kb on - strand, within BACOVA_02033 at 335.921 kb on - strand, within BACOVA_02033 at 335.923 kb on - strand, within BACOVA_02033 at 335.946 kb on + strand, within BACOVA_02033 at 335.946 kb on + strand, within BACOVA_02033 at 335.985 kb on - strand, within BACOVA_02033 at 336.078 kb on + strand, within BACOVA_02033 at 336.078 kb on + strand, within BACOVA_02033 at 336.079 kb on - strand, within BACOVA_02033 at 336.079 kb on - strand, within BACOVA_02033 at 336.098 kb on - strand, within BACOVA_02033 at 336.143 kb on - strand, within BACOVA_02033 at 336.145 kb on + strand, within BACOVA_02033 at 336.145 kb on + strand, within BACOVA_02033 at 336.146 kb on - strand, within BACOVA_02033 at 336.146 kb on - strand, within BACOVA_02033 at 336.166 kb on + strand, within BACOVA_02033 at 336.167 kb on - strand, within BACOVA_02033 at 336.181 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.294 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.363 kb on + strand, within BACOVA_02033 at 336.429 kb on + strand, within BACOVA_02033 at 336.429 kb on + strand, within BACOVA_02033 at 336.429 kb on + strand, within BACOVA_02033 at 336.430 kb on - strand, within BACOVA_02033 at 336.430 kb on - strand, within BACOVA_02033 at 336.431 kb on + strand, within BACOVA_02033 at 336.451 kb on + strand, within BACOVA_02033 at 336.456 kb on + strand, within BACOVA_02033 at 336.468 kb on + strand, within BACOVA_02033 at 336.468 kb on + strand, within BACOVA_02033 at 336.468 kb on + strand, within BACOVA_02033 at 336.478 kb on - strand, within BACOVA_02033 at 336.483 kb on + strand, within BACOVA_02033 at 336.484 kb on - strand, within BACOVA_02033 at 336.484 kb on - strand, within BACOVA_02033 at 336.484 kb on - strand, within BACOVA_02033 at 336.508 kb on + strand, within BACOVA_02033 at 336.539 kb on - strand, within BACOVA_02033 at 336.600 kb on + strand, within BACOVA_02033 at 336.601 kb on - strand, within BACOVA_02033 at 336.604 kb on + strand, within BACOVA_02033 at 336.604 kb on + strand, within BACOVA_02033 at 336.605 kb on - strand, within BACOVA_02033 at 336.605 kb on - strand, within BACOVA_02033 at 336.709 kb on - strand, within BACOVA_02033 at 336.723 kb on + strand, within BACOVA_02033 at 336.724 kb on - strand, within BACOVA_02033 at 336.727 kb on + strand, within BACOVA_02033 at 336.727 kb on + strand, within BACOVA_02033 at 336.727 kb on + strand, within BACOVA_02033 at 336.799 kb on - strand, within BACOVA_02033 at 336.799 kb on - strand, within BACOVA_02033 at 336.800 kb on - strand, within BACOVA_02033 at 336.803 kb on + strand, within BACOVA_02033 at 336.803 kb on + strand, within BACOVA_02033 at 336.803 kb on + strand, within BACOVA_02033 at 336.804 kb on - strand, within BACOVA_02033 at 336.804 kb on - strand, within BACOVA_02033 at 336.804 kb on - strand, within BACOVA_02033 at 336.804 kb on - strand, within BACOVA_02033 at 336.806 kb on - strand, within BACOVA_02033 at 336.806 kb on - strand, within BACOVA_02033 at 336.806 kb on - strand, within BACOVA_02033 at 336.806 kb on - strand, within BACOVA_02033 at 336.807 kb on + strand, within BACOVA_02033 at 336.807 kb on + strand, within BACOVA_02033 at 336.807 kb on + strand, within BACOVA_02033 at 336.807 kb on + strand, within BACOVA_02033 at 336.808 kb on - strand, within BACOVA_02033 at 336.815 kb on - strand, within BACOVA_02033 at 336.815 kb on - strand, within BACOVA_02033 at 336.844 kb on + strand, within BACOVA_02033 at 336.844 kb on + strand, within BACOVA_02033 at 336.844 kb on + strand, within BACOVA_02033 at 336.864 kb on - strand, within BACOVA_02033 at 336.877 kb on + strand at 336.877 kb on + strand at 336.902 kb on - strand at 336.906 kb on + strand at 336.917 kb on + strand at 336.992 kb on - strand at 337.015 kb on - strand at 337.015 kb on - strand at 337.015 kb on - strand at 337.076 kb on + strand at 337.077 kb on - strand at 337.124 kb on - strand, within BACOVA_02034 at 337.144 kb on + strand, within BACOVA_02034 at 337.144 kb on + strand, within BACOVA_02034 at 337.145 kb on - strand, within BACOVA_02034 at 337.216 kb on + strand, within BACOVA_02034 at 337.217 kb on - strand, within BACOVA_02034 at 337.234 kb on + strand, within BACOVA_02034 at 337.242 kb on - strand, within BACOVA_02034 at 337.316 kb on + strand, within BACOVA_02034 at 337.317 kb on - strand, within BACOVA_02034 at 337.334 kb on + strand, within BACOVA_02034 at 337.358 kb on - strand, within BACOVA_02034 at 337.358 kb on - strand, within BACOVA_02034 at 337.362 kb on - strand, within BACOVA_02034 at 337.419 kb on + strand, within BACOVA_02034 at 337.420 kb on - strand, within BACOVA_02034 at 337.439 kb on - strand, within BACOVA_02034 at 337.489 kb on + strand, within BACOVA_02034 at 337.490 kb on - strand, within BACOVA_02034 at 337.531 kb on + strand, within BACOVA_02034 at 337.553 kb on + strand, within BACOVA_02034 at 337.554 kb on - strand, within BACOVA_02034 at 337.643 kb on - strand, within BACOVA_02034 at 337.649 kb on - strand, within BACOVA_02034 at 337.658 kb on - strand, within BACOVA_02034 at 337.691 kb on + strand, within BACOVA_02034 at 337.700 kb on - strand, within BACOVA_02034 at 337.744 kb on + strand at 337.756 kb on + strand at 337.787 kb on + strand at 337.789 kb on + strand at 337.789 kb on + strand at 337.790 kb on - strand at 337.803 kb on - strand at 337.820 kb on - strand at 337.916 kb on + strand, within BACOVA_02035 at 337.916 kb on + strand, within BACOVA_02035 at 337.935 kb on + strand, within BACOVA_02035 at 337.937 kb on + strand, within BACOVA_02035 at 337.937 kb on + strand, within BACOVA_02035 at 337.982 kb on + strand, within BACOVA_02035 at 337.982 kb on + strand, within BACOVA_02035 at 337.983 kb on - strand, within BACOVA_02035
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C) remove 334,527 + -0.5 334,528 - -0.5 334,528 - -0.7 334,528 - -0.3 334,670 + BACOVA_02031 0.27 -0.2 334,671 - BACOVA_02031 0.27 -1.1 334,708 - BACOVA_02031 0.32 +0.7 334,725 - BACOVA_02031 0.34 -0.0 334,760 + BACOVA_02031 0.38 -0.2 334,775 + BACOVA_02031 0.40 +0.9 334,882 + BACOVA_02031 0.53 -0.8 334,901 + BACOVA_02031 0.56 +0.2 334,901 + BACOVA_02031 0.56 -0.9 334,936 + BACOVA_02031 0.60 -0.0 334,937 - BACOVA_02031 0.60 -0.3 334,975 - BACOVA_02031 0.65 -0.9 334,975 - BACOVA_02031 0.65 -0.1 334,976 + BACOVA_02031 0.65 +0.1 334,976 + BACOVA_02031 0.65 -0.8 334,977 - BACOVA_02031 0.65 -0.1 335,015 + BACOVA_02031 0.70 +0.7 335,030 + BACOVA_02031 0.72 +0.2 335,083 - BACOVA_02031 0.78 +1.2 335,083 - BACOVA_02031 0.78 +0.1 335,124 - BACOVA_02031 0.83 +0.1 335,124 - BACOVA_02031 0.83 +0.2 335,132 + BACOVA_02031 0.84 +2.6 335,132 + BACOVA_02031 0.84 +0.7 335,133 - BACOVA_02031 0.85 +0.3 335,133 - BACOVA_02031 0.85 -0.0 335,224 + +0.5 335,235 + +0.1 335,235 + -0.4 335,236 - -0.4 335,259 - -0.3 335,356 + BACOVA_02032 0.65 +0.4 335,380 + BACOVA_02032 0.82 +0.7 335,380 + BACOVA_02032 0.82 +0.4 335,381 - BACOVA_02032 0.83 -0.5 335,381 - BACOVA_02032 0.83 -0.4 335,384 + BACOVA_02032 0.85 +0.2 335,385 + BACOVA_02032 0.86 +1.7 335,396 + +0.5 335,423 + +1.8 335,458 - +0.1 335,482 + +0.3 335,483 - -0.1 335,489 + +1.0 335,492 + +0.5 335,492 + +1.2 335,493 - -0.4 335,529 + +1.2 335,530 - +1.2 335,530 - +1.7 335,537 + -0.9 335,609 - -0.5 335,620 - -0.6 335,625 + +0.4 335,626 - -0.2 335,629 + +1.2 335,630 - -1.1 335,634 + +0.7 335,634 + -0.3 335,650 + BACOVA_02033 0.10 -0.4 335,651 - BACOVA_02033 0.10 -0.6 335,677 - BACOVA_02033 0.12 -0.3 335,697 - BACOVA_02033 0.13 +0.0 335,712 + BACOVA_02033 0.14 -0.6 335,724 + BACOVA_02033 0.15 -0.0 335,725 - BACOVA_02033 0.15 -0.2 335,725 - BACOVA_02033 0.15 -0.2 335,726 + BACOVA_02033 0.15 -1.0 335,726 + BACOVA_02033 0.15 +0.4 335,726 + BACOVA_02033 0.15 -0.7 335,726 + BACOVA_02033 0.15 +0.7 335,727 - BACOVA_02033 0.15 +0.7 335,727 - BACOVA_02033 0.15 +0.4 335,727 - BACOVA_02033 0.15 -0.4 335,740 + BACOVA_02033 0.16 +1.2 335,802 + BACOVA_02033 0.20 -1.9 335,817 + BACOVA_02033 0.21 +1.2 335,817 + BACOVA_02033 0.21 -0.3 335,818 - BACOVA_02033 0.21 -0.8 335,821 + BACOVA_02033 0.21 +0.1 335,834 - BACOVA_02033 0.22 -0.4 335,892 + BACOVA_02033 0.26 -1.3 335,892 + BACOVA_02033 0.26 -0.1 335,905 - BACOVA_02033 0.27 +0.7 335,921 - BACOVA_02033 0.28 -0.2 335,923 - BACOVA_02033 0.28 -0.5 335,946 + BACOVA_02033 0.29 +0.2 335,946 + BACOVA_02033 0.29 +0.1 335,985 - BACOVA_02033 0.32 +0.9 336,078 + BACOVA_02033 0.38 +0.5 336,078 + BACOVA_02033 0.38 +0.1 336,079 - BACOVA_02033 0.38 -1.6 336,079 - BACOVA_02033 0.38 -1.5 336,098 - BACOVA_02033 0.39 +0.0 336,143 - BACOVA_02033 0.42 -0.5 336,145 + BACOVA_02033 0.42 -0.1 336,145 + BACOVA_02033 0.42 -0.8 336,146 - BACOVA_02033 0.42 -0.6 336,146 - BACOVA_02033 0.42 +0.8 336,166 + BACOVA_02033 0.44 -0.3 336,167 - BACOVA_02033 0.44 -1.4 336,181 + BACOVA_02033 0.45 -2.7 336,192 + BACOVA_02033 0.45 -0.6 336,192 + BACOVA_02033 0.45 +0.3 336,192 + BACOVA_02033 0.45 -0.3 336,294 + BACOVA_02033 0.52 +0.1 336,327 + BACOVA_02033 0.54 +0.2 336,327 + BACOVA_02033 0.54 -0.3 336,327 + BACOVA_02033 0.54 -1.2 336,327 + BACOVA_02033 0.54 +0.2 336,328 - BACOVA_02033 0.54 +0.8 336,328 - BACOVA_02033 0.54 -0.5 336,328 - BACOVA_02033 0.54 -0.3 336,328 - BACOVA_02033 0.54 +0.1 336,328 - BACOVA_02033 0.54 -0.1 336,363 + BACOVA_02033 0.57 +0.4 336,429 + BACOVA_02033 0.61 -0.7 336,429 + BACOVA_02033 0.61 -0.2 336,429 + BACOVA_02033 0.61 -0.3 336,430 - BACOVA_02033 0.61 +0.7 336,430 - BACOVA_02033 0.61 +0.3 336,431 + BACOVA_02033 0.61 -0.4 336,451 + BACOVA_02033 0.62 -0.5 336,456 + BACOVA_02033 0.63 -0.3 336,468 + BACOVA_02033 0.63 +0.3 336,468 + BACOVA_02033 0.63 -0.3 336,468 + BACOVA_02033 0.63 +0.2 336,478 - BACOVA_02033 0.64 +0.0 336,483 + BACOVA_02033 0.64 -0.1 336,484 - BACOVA_02033 0.65 +0.3 336,484 - BACOVA_02033 0.65 -0.9 336,484 - BACOVA_02033 0.65 -1.5 336,508 + BACOVA_02033 0.66 -0.4 336,539 - BACOVA_02033 0.68 -0.3 336,600 + BACOVA_02033 0.72 -0.1 336,601 - BACOVA_02033 0.72 -0.4 336,604 + BACOVA_02033 0.72 +0.3 336,604 + BACOVA_02033 0.72 +0.2 336,605 - BACOVA_02033 0.72 -0.2 336,605 - BACOVA_02033 0.72 +0.7 336,709 - BACOVA_02033 0.79 +0.7 336,723 + BACOVA_02033 0.80 +0.2 336,724 - BACOVA_02033 0.80 -1.3 336,727 + BACOVA_02033 0.80 +0.4 336,727 + BACOVA_02033 0.80 +1.2 336,727 + BACOVA_02033 0.80 -0.2 336,799 - BACOVA_02033 0.85 -1.2 336,799 - BACOVA_02033 0.85 -0.4 336,800 - BACOVA_02033 0.85 -0.1 336,803 + BACOVA_02033 0.85 +0.7 336,803 + BACOVA_02033 0.85 -1.0 336,803 + BACOVA_02033 0.85 +0.2 336,804 - BACOVA_02033 0.85 +1.2 336,804 - BACOVA_02033 0.85 -0.4 336,804 - BACOVA_02033 0.85 -0.3 336,804 - BACOVA_02033 0.85 -0.4 336,806 - BACOVA_02033 0.86 -0.3 336,806 - BACOVA_02033 0.86 +0.4 336,806 - BACOVA_02033 0.86 -0.4 336,806 - BACOVA_02033 0.86 -0.6 336,807 + BACOVA_02033 0.86 +0.2 336,807 + BACOVA_02033 0.86 -1.1 336,807 + BACOVA_02033 0.86 +1.2 336,807 + BACOVA_02033 0.86 +0.7 336,808 - BACOVA_02033 0.86 +0.7 336,815 - BACOVA_02033 0.86 +0.2 336,815 - BACOVA_02033 0.86 -0.3 336,844 + BACOVA_02033 0.88 +0.2 336,844 + BACOVA_02033 0.88 +0.1 336,844 + BACOVA_02033 0.88 +0.2 336,864 - BACOVA_02033 0.89 -0.5 336,877 + -0.3 336,877 + +0.7 336,902 - +0.1 336,906 + +0.4 336,917 + -0.3 336,992 - -1.1 337,015 - +0.3 337,015 - -0.2 337,015 - +0.3 337,076 + -0.8 337,077 - -1.5 337,124 - BACOVA_02034 0.11 +1.7 337,144 + BACOVA_02034 0.13 +0.0 337,144 + BACOVA_02034 0.13 -0.8 337,145 - BACOVA_02034 0.13 +0.2 337,216 + BACOVA_02034 0.23 -0.7 337,217 - BACOVA_02034 0.23 -0.0 337,234 + BACOVA_02034 0.25 -1.2 337,242 - BACOVA_02034 0.26 -0.3 337,316 + BACOVA_02034 0.35 -0.5 337,317 - BACOVA_02034 0.36 -0.3 337,334 + BACOVA_02034 0.38 +0.6 337,358 - BACOVA_02034 0.41 -0.5 337,358 - BACOVA_02034 0.41 +0.3 337,362 - BACOVA_02034 0.41 +0.6 337,419 + BACOVA_02034 0.49 +0.9 337,420 - BACOVA_02034 0.49 +1.8 337,439 - BACOVA_02034 0.51 -0.6 337,489 + BACOVA_02034 0.58 -0.5 337,490 - BACOVA_02034 0.58 +0.7 337,531 + BACOVA_02034 0.63 -0.0 337,553 + BACOVA_02034 0.66 +2.0 337,554 - BACOVA_02034 0.66 -0.1 337,643 - BACOVA_02034 0.77 +0.2 337,649 - BACOVA_02034 0.78 +0.5 337,658 - BACOVA_02034 0.79 -0.9 337,691 + BACOVA_02034 0.83 -0.6 337,700 - BACOVA_02034 0.85 +0.3 337,744 + +0.8 337,756 + -0.5 337,787 + -0.7 337,789 + +0.1 337,789 + +0.2 337,790 - -0.6 337,803 - +0.8 337,820 - -0.3 337,916 + BACOVA_02035 0.11 +0.1 337,916 + BACOVA_02035 0.11 -0.3 337,935 + BACOVA_02035 0.14 -1.2 337,937 + BACOVA_02035 0.14 -1.9 337,937 + BACOVA_02035 0.14 +0.1 337,982 + BACOVA_02035 0.20 -0.4 337,982 + BACOVA_02035 0.20 -0.1 337,983 - BACOVA_02035 0.20 +1.0
Or see this region's nucleotide sequence