Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01960

Experiment: L-Rhamnose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01959 and BACOVA_01960 are separated by 180 nucleotidesBACOVA_01960 and BACOVA_01961 are separated by 53 nucleotides BACOVA_01959: BACOVA_01959 - GH3 auxin-responsive promoter, at 168,046 to 169,572 _01959 BACOVA_01960: BACOVA_01960 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 169,753 to 170,889 _01960 BACOVA_01961: BACOVA_01961 - SNF2 family N-terminal domain protein, at 170,943 to 173,783 _01961 Position (kb) 169 170 171Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 168.761 kb on + strand, within BACOVA_01959at 168.762 kb on - strand, within BACOVA_01959at 168.824 kb on - strand, within BACOVA_01959at 168.824 kb on - strand, within BACOVA_01959at 168.833 kb on + strand, within BACOVA_01959at 168.856 kb on + strand, within BACOVA_01959at 168.856 kb on + strand, within BACOVA_01959at 168.857 kb on - strand, within BACOVA_01959at 168.857 kb on - strand, within BACOVA_01959at 168.861 kb on - strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.926 kb on + strand, within BACOVA_01959at 168.927 kb on - strand, within BACOVA_01959at 168.927 kb on - strand, within BACOVA_01959at 168.927 kb on - strand, within BACOVA_01959at 168.929 kb on + strand, within BACOVA_01959at 168.929 kb on + strand, within BACOVA_01959at 169.000 kb on + strand, within BACOVA_01959at 169.000 kb on + strand, within BACOVA_01959at 169.033 kb on + strand, within BACOVA_01959at 169.034 kb on - strand, within BACOVA_01959at 169.044 kb on + strand, within BACOVA_01959at 169.064 kb on + strand, within BACOVA_01959at 169.065 kb on - strand, within BACOVA_01959at 169.117 kb on - strand, within BACOVA_01959at 169.260 kb on + strand, within BACOVA_01959at 169.298 kb on + strand, within BACOVA_01959at 169.343 kb on + strand, within BACOVA_01959at 169.403 kb on + strand, within BACOVA_01959at 169.404 kb on - strand, within BACOVA_01959at 169.425 kb on - strandat 169.445 kb on + strandat 169.512 kb on + strandat 169.513 kb on - strandat 169.522 kb on + strandat 169.524 kb on + strandat 169.525 kb on - strandat 169.525 kb on - strandat 169.526 kb on + strandat 169.526 kb on + strandat 169.526 kb on + strandat 169.527 kb on - strandat 169.588 kb on + strandat 169.598 kb on + strandat 169.612 kb on - strandat 169.620 kb on + strandat 169.621 kb on - strandat 169.626 kb on + strandat 169.685 kb on + strandat 169.685 kb on + strandat 169.700 kb on + strandat 169.726 kb on - strandat 169.726 kb on - strandat 169.741 kb on + strandat 169.742 kb on - strandat 169.750 kb on + strandat 169.769 kb on - strandat 169.790 kb on - strandat 169.803 kb on - strandat 169.803 kb on - strandat 169.864 kb on + strandat 169.885 kb on - strand, within BACOVA_01960at 169.890 kb on + strand, within BACOVA_01960at 169.890 kb on + strand, within BACOVA_01960at 169.950 kb on + strand, within BACOVA_01960at 170.021 kb on - strand, within BACOVA_01960at 170.023 kb on + strand, within BACOVA_01960at 170.026 kb on + strand, within BACOVA_01960at 170.109 kb on + strand, within BACOVA_01960at 170.109 kb on + strand, within BACOVA_01960at 170.109 kb on + strand, within BACOVA_01960at 170.199 kb on + strand, within BACOVA_01960at 170.199 kb on + strand, within BACOVA_01960at 170.320 kb on + strand, within BACOVA_01960at 170.320 kb on + strand, within BACOVA_01960at 170.322 kb on + strand, within BACOVA_01960at 170.322 kb on + strand, within BACOVA_01960at 170.323 kb on - strand, within BACOVA_01960at 170.323 kb on - strand, within BACOVA_01960at 170.323 kb on - strand, within BACOVA_01960at 170.391 kb on + strand, within BACOVA_01960at 170.483 kb on + strand, within BACOVA_01960at 170.484 kb on - strand, within BACOVA_01960at 170.492 kb on + strand, within BACOVA_01960at 170.507 kb on - strand, within BACOVA_01960at 170.544 kb on - strand, within BACOVA_01960at 170.594 kb on + strand, within BACOVA_01960at 170.610 kb on + strand, within BACOVA_01960at 170.655 kb on - strand, within BACOVA_01960at 170.662 kb on - strand, within BACOVA_01960at 170.670 kb on + strand, within BACOVA_01960at 170.694 kb on - strand, within BACOVA_01960at 170.694 kb on - strand, within BACOVA_01960at 170.701 kb on - strand, within BACOVA_01960at 170.972 kb on + strandat 170.973 kb on - strandat 170.973 kb on - strandat 170.973 kb on - strandat 170.973 kb on - strandat 171.021 kb on + strandat 171.022 kb on - strandat 171.061 kb on + strandat 171.092 kb on + strandat 171.141 kb on + strandat 171.142 kb on - strandat 171.142 kb on - strandat 171.144 kb on + strandat 171.146 kb on + strandat 171.147 kb on - strandat 171.171 kb on + strandat 171.207 kb on - strandat 171.254 kb on + strand, within BACOVA_01961at 171.255 kb on - strand, within BACOVA_01961at 171.333 kb on - strand, within BACOVA_01961at 171.340 kb on + strand, within BACOVA_01961at 171.341 kb on - strand, within BACOVA_01961at 171.341 kb on - strand, within BACOVA_01961at 171.342 kb on + strand, within BACOVA_01961at 171.343 kb on - strand, within BACOVA_01961at 171.364 kb on + strand, within BACOVA_01961at 171.365 kb on - strand, within BACOVA_01961at 171.438 kb on + strand, within BACOVA_01961at 171.442 kb on - strand, within BACOVA_01961at 171.442 kb on - strand, within BACOVA_01961at 171.488 kb on - strand, within BACOVA_01961at 171.514 kb on + strand, within BACOVA_01961at 171.529 kb on + strand, within BACOVA_01961at 171.529 kb on + strand, within BACOVA_01961at 171.531 kb on + strand, within BACOVA_01961at 171.531 kb on + strand, within BACOVA_01961at 171.532 kb on - strand, within BACOVA_01961at 171.595 kb on + strand, within BACOVA_01961at 171.595 kb on + strand, within BACOVA_01961at 171.618 kb on + strand, within BACOVA_01961at 171.622 kb on + strand, within BACOVA_01961at 171.627 kb on - strand, within BACOVA_01961at 171.627 kb on - strand, within BACOVA_01961at 171.680 kb on + strand, within BACOVA_01961at 171.682 kb on + strand, within BACOVA_01961at 171.683 kb on - strand, within BACOVA_01961at 171.736 kb on - strand, within BACOVA_01961at 171.786 kb on - strand, within BACOVA_01961at 171.795 kb on - strand, within BACOVA_01961at 171.822 kb on + strand, within BACOVA_01961

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C)
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168,761 + BACOVA_01959 0.47 -3.2
168,762 - BACOVA_01959 0.47 -2.6
168,824 - BACOVA_01959 0.51 -2.9
168,824 - BACOVA_01959 0.51 -3.3
168,833 + BACOVA_01959 0.52 -5.8
168,856 + BACOVA_01959 0.53 -3.9
168,856 + BACOVA_01959 0.53 -3.3
168,857 - BACOVA_01959 0.53 -4.4
168,857 - BACOVA_01959 0.53 -4.0
168,861 - BACOVA_01959 0.53 -0.7
168,868 + BACOVA_01959 0.54 -2.1
168,868 + BACOVA_01959 0.54 -2.7
168,868 + BACOVA_01959 0.54 -4.9
168,868 + BACOVA_01959 0.54 -4.5
168,869 - BACOVA_01959 0.54 -0.3
168,869 - BACOVA_01959 0.54 -4.0
168,869 - BACOVA_01959 0.54 -2.7
168,926 + BACOVA_01959 0.58 -1.7
168,927 - BACOVA_01959 0.58 -3.7
168,927 - BACOVA_01959 0.58 -3.8
168,927 - BACOVA_01959 0.58 -3.9
168,929 + BACOVA_01959 0.58 -4.4
168,929 + BACOVA_01959 0.58 -4.7
169,000 + BACOVA_01959 0.62 -4.9
169,000 + BACOVA_01959 0.62 -2.9
169,033 + BACOVA_01959 0.65 -2.9
169,034 - BACOVA_01959 0.65 -4.7
169,044 + BACOVA_01959 0.65 -4.7
169,064 + BACOVA_01959 0.67 -3.2
169,065 - BACOVA_01959 0.67 -2.3
169,117 - BACOVA_01959 0.70 -3.1
169,260 + BACOVA_01959 0.80 -3.9
169,298 + BACOVA_01959 0.82 -2.6
169,343 + BACOVA_01959 0.85 -2.7
169,403 + BACOVA_01959 0.89 -3.7
169,404 - BACOVA_01959 0.89 -2.4
169,425 - -1.6
169,445 + -2.2
169,512 + -1.9
169,513 - -1.1
169,522 + -1.4
169,524 + +1.3
169,525 - -2.8
169,525 - -2.2
169,526 + -3.3
169,526 + -4.2
169,526 + -1.1
169,527 - -0.3
169,588 + +0.3
169,598 + -1.2
169,612 - -0.8
169,620 + -0.6
169,621 - -0.7
169,626 + -0.1
169,685 + +0.4
169,685 + -1.4
169,700 + -0.1
169,726 - +0.3
169,726 - -0.0
169,741 + +0.6
169,742 - -0.5
169,750 + +0.4
169,769 - -0.4
169,790 - +0.2
169,803 - -0.4
169,803 - -1.5
169,864 + +1.0
169,885 - BACOVA_01960 0.12 -2.1
169,890 + BACOVA_01960 0.12 -0.4
169,890 + BACOVA_01960 0.12 +0.1
169,950 + BACOVA_01960 0.17 +0.7
170,021 - BACOVA_01960 0.24 -0.7
170,023 + BACOVA_01960 0.24 -0.5
170,026 + BACOVA_01960 0.24 +0.7
170,109 + BACOVA_01960 0.31 -1.1
170,109 + BACOVA_01960 0.31 +1.3
170,109 + BACOVA_01960 0.31 -1.7
170,199 + BACOVA_01960 0.39 +0.8
170,199 + BACOVA_01960 0.39 +1.3
170,320 + BACOVA_01960 0.50 -0.8
170,320 + BACOVA_01960 0.50 -0.8
170,322 + BACOVA_01960 0.50 +0.1
170,322 + BACOVA_01960 0.50 -0.3
170,323 - BACOVA_01960 0.50 -0.6
170,323 - BACOVA_01960 0.50 -0.3
170,323 - BACOVA_01960 0.50 -0.8
170,391 + BACOVA_01960 0.56 -0.5
170,483 + BACOVA_01960 0.64 -0.3
170,484 - BACOVA_01960 0.64 -0.4
170,492 + BACOVA_01960 0.65 +1.0
170,507 - BACOVA_01960 0.66 +0.1
170,544 - BACOVA_01960 0.70 -0.2
170,594 + BACOVA_01960 0.74 +0.0
170,610 + BACOVA_01960 0.75 -1.0
170,655 - BACOVA_01960 0.79 -0.7
170,662 - BACOVA_01960 0.80 +0.8
170,670 + BACOVA_01960 0.81 -0.2
170,694 - BACOVA_01960 0.83 +0.4
170,694 - BACOVA_01960 0.83 +0.2
170,701 - BACOVA_01960 0.83 +2.3
170,972 + +0.8
170,973 - +1.3
170,973 - -0.3
170,973 - -0.4
170,973 - +0.3
171,021 + -0.2
171,022 - -0.3
171,061 + -0.6
171,092 + -0.7
171,141 + -1.0
171,142 - +0.1
171,142 - +0.0
171,144 + +1.3
171,146 + -0.4
171,147 - -1.1
171,171 + +0.7
171,207 - -0.5
171,254 + BACOVA_01961 0.11 -0.1
171,255 - BACOVA_01961 0.11 -0.7
171,333 - BACOVA_01961 0.14 +1.3
171,340 + BACOVA_01961 0.14 +0.6
171,341 - BACOVA_01961 0.14 +0.0
171,341 - BACOVA_01961 0.14 +1.3
171,342 + BACOVA_01961 0.14 -0.9
171,343 - BACOVA_01961 0.14 +0.8
171,364 + BACOVA_01961 0.15 +1.3
171,365 - BACOVA_01961 0.15 +0.7
171,438 + BACOVA_01961 0.17 -0.4
171,442 - BACOVA_01961 0.18 +0.3
171,442 - BACOVA_01961 0.18 -0.4
171,488 - BACOVA_01961 0.19 -0.1
171,514 + BACOVA_01961 0.20 +0.7
171,529 + BACOVA_01961 0.21 +0.1
171,529 + BACOVA_01961 0.21 -0.1
171,531 + BACOVA_01961 0.21 +0.1
171,531 + BACOVA_01961 0.21 -0.2
171,532 - BACOVA_01961 0.21 +1.7
171,595 + BACOVA_01961 0.23 -1.4
171,595 + BACOVA_01961 0.23 +0.3
171,618 + BACOVA_01961 0.24 -0.7
171,622 + BACOVA_01961 0.24 +0.8
171,627 - BACOVA_01961 0.24 +0.1
171,627 - BACOVA_01961 0.24 -0.2
171,680 + BACOVA_01961 0.26 +1.3
171,682 + BACOVA_01961 0.26 +2.6
171,683 - BACOVA_01961 0.26 +0.8
171,736 - BACOVA_01961 0.28 -0.0
171,786 - BACOVA_01961 0.30 -0.3
171,795 - BACOVA_01961 0.30 -0.5
171,822 + BACOVA_01961 0.31 -0.4

Or see this region's nucleotide sequence