Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01958

Experiment: L-Rhamnose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01956 and BACOVA_01957 overlap by 35 nucleotidesBACOVA_01957 and BACOVA_01958 overlap by 59 nucleotidesBACOVA_01958 and BACOVA_01959 are separated by 137 nucleotides BACOVA_01956: BACOVA_01956 - beta-ketoacyl-acyl-carrier-protein synthase II, at 164,670 to 165,932 _01956 BACOVA_01957: BACOVA_01957 - ribonuclease III, at 165,898 to 166,956 _01957 BACOVA_01958: BACOVA_01958 - phosphofructokinase, at 166,898 to 167,908 _01958 BACOVA_01959: BACOVA_01959 - GH3 auxin-responsive promoter, at 168,046 to 169,572 _01959 Position (kb) 166 167 168Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 165.933 kb on + strandat 165.994 kb on + strandat 166.035 kb on + strand, within BACOVA_01957at 166.046 kb on - strand, within BACOVA_01957at 166.127 kb on + strand, within BACOVA_01957at 166.161 kb on + strand, within BACOVA_01957at 166.162 kb on - strand, within BACOVA_01957at 166.162 kb on - strand, within BACOVA_01957at 166.169 kb on - strand, within BACOVA_01957at 166.209 kb on + strand, within BACOVA_01957at 166.210 kb on - strand, within BACOVA_01957at 166.226 kb on + strand, within BACOVA_01957at 166.285 kb on + strand, within BACOVA_01957at 166.286 kb on - strand, within BACOVA_01957at 166.286 kb on - strand, within BACOVA_01957at 166.290 kb on + strand, within BACOVA_01957at 166.316 kb on - strand, within BACOVA_01957at 166.316 kb on - strand, within BACOVA_01957at 166.316 kb on - strand, within BACOVA_01957at 166.321 kb on + strand, within BACOVA_01957at 166.322 kb on - strand, within BACOVA_01957at 166.322 kb on - strand, within BACOVA_01957at 166.354 kb on - strand, within BACOVA_01957at 166.354 kb on - strand, within BACOVA_01957at 166.357 kb on + strand, within BACOVA_01957at 166.417 kb on + strand, within BACOVA_01957at 166.418 kb on - strand, within BACOVA_01957at 166.418 kb on - strand, within BACOVA_01957at 166.420 kb on - strand, within BACOVA_01957at 166.437 kb on - strand, within BACOVA_01957at 166.551 kb on - strand, within BACOVA_01957at 166.565 kb on + strand, within BACOVA_01957at 166.565 kb on + strand, within BACOVA_01957at 166.566 kb on - strand, within BACOVA_01957at 166.569 kb on + strand, within BACOVA_01957at 166.569 kb on + strand, within BACOVA_01957at 166.647 kb on - strand, within BACOVA_01957at 166.647 kb on - strand, within BACOVA_01957at 166.671 kb on + strand, within BACOVA_01957at 166.671 kb on + strand, within BACOVA_01957at 166.671 kb on + strand, within BACOVA_01957at 166.671 kb on + strand, within BACOVA_01957at 166.672 kb on - strand, within BACOVA_01957at 166.672 kb on - strand, within BACOVA_01957at 166.672 kb on - strand, within BACOVA_01957at 166.698 kb on - strand, within BACOVA_01957at 166.820 kb on + strand, within BACOVA_01957at 166.875 kb on - strandat 166.875 kb on - strandat 166.993 kb on + strandat 166.993 kb on + strandat 166.993 kb on + strandat 166.993 kb on + strandat 166.993 kb on + strandat 166.994 kb on - strandat 166.994 kb on - strandat 167.000 kb on + strand, within BACOVA_01958at 167.000 kb on + strand, within BACOVA_01958at 167.001 kb on - strand, within BACOVA_01958at 167.001 kb on - strand, within BACOVA_01958at 167.002 kb on + strand, within BACOVA_01958at 167.015 kb on + strand, within BACOVA_01958at 167.104 kb on + strand, within BACOVA_01958at 167.126 kb on - strand, within BACOVA_01958at 167.126 kb on - strand, within BACOVA_01958at 167.128 kb on - strand, within BACOVA_01958at 167.154 kb on - strand, within BACOVA_01958at 167.166 kb on + strand, within BACOVA_01958at 167.238 kb on - strand, within BACOVA_01958at 167.238 kb on - strand, within BACOVA_01958at 167.238 kb on - strand, within BACOVA_01958at 167.242 kb on + strand, within BACOVA_01958at 167.242 kb on + strand, within BACOVA_01958at 167.302 kb on + strand, within BACOVA_01958at 167.302 kb on + strand, within BACOVA_01958at 167.303 kb on - strand, within BACOVA_01958at 167.304 kb on + strand, within BACOVA_01958at 167.378 kb on - strand, within BACOVA_01958at 167.453 kb on - strand, within BACOVA_01958at 167.458 kb on + strand, within BACOVA_01958at 167.459 kb on - strand, within BACOVA_01958at 167.459 kb on - strand, within BACOVA_01958at 167.503 kb on + strand, within BACOVA_01958at 167.504 kb on + strand, within BACOVA_01958at 167.521 kb on + strand, within BACOVA_01958at 167.531 kb on + strand, within BACOVA_01958at 167.531 kb on + strand, within BACOVA_01958at 167.532 kb on - strand, within BACOVA_01958at 167.532 kb on - strand, within BACOVA_01958at 167.539 kb on + strand, within BACOVA_01958at 167.540 kb on - strand, within BACOVA_01958at 167.540 kb on - strand, within BACOVA_01958at 167.640 kb on - strand, within BACOVA_01958at 167.705 kb on + strand, within BACOVA_01958at 167.706 kb on - strand, within BACOVA_01958at 167.753 kb on - strand, within BACOVA_01958at 167.755 kb on + strand, within BACOVA_01958at 167.756 kb on - strand, within BACOVA_01958at 167.804 kb on + strand, within BACOVA_01958at 167.804 kb on + strand, within BACOVA_01958at 167.805 kb on - strand, within BACOVA_01958at 167.823 kb on + strandat 167.892 kb on - strandat 167.941 kb on - strandat 168.002 kb on + strandat 168.007 kb on + strandat 168.031 kb on + strandat 168.032 kb on - strandat 168.098 kb on + strandat 168.104 kb on + strandat 168.104 kb on + strandat 168.105 kb on - strandat 168.105 kb on - strandat 168.105 kb on - strandat 168.105 kb on - strandat 168.105 kb on - strandat 168.106 kb on + strandat 168.107 kb on - strandat 168.111 kb on + strandat 168.128 kb on + strandat 168.128 kb on + strandat 168.128 kb on + strandat 168.129 kb on - strandat 168.269 kb on - strand, within BACOVA_01959at 168.269 kb on - strand, within BACOVA_01959at 168.272 kb on + strand, within BACOVA_01959at 168.273 kb on - strand, within BACOVA_01959at 168.320 kb on + strand, within BACOVA_01959at 168.351 kb on + strand, within BACOVA_01959at 168.358 kb on - strand, within BACOVA_01959at 168.406 kb on + strand, within BACOVA_01959at 168.530 kb on + strand, within BACOVA_01959at 168.530 kb on + strand, within BACOVA_01959at 168.530 kb on + strand, within BACOVA_01959at 168.533 kb on + strand, within BACOVA_01959at 168.549 kb on + strand, within BACOVA_01959at 168.710 kb on + strand, within BACOVA_01959at 168.761 kb on + strand, within BACOVA_01959at 168.762 kb on - strand, within BACOVA_01959at 168.824 kb on - strand, within BACOVA_01959at 168.824 kb on - strand, within BACOVA_01959at 168.833 kb on + strand, within BACOVA_01959at 168.856 kb on + strand, within BACOVA_01959at 168.856 kb on + strand, within BACOVA_01959at 168.857 kb on - strand, within BACOVA_01959at 168.857 kb on - strand, within BACOVA_01959at 168.861 kb on - strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose 10 mM (C)
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165,933 + +0.7
165,994 + +0.7
166,035 + BACOVA_01957 0.13 -0.3
166,046 - BACOVA_01957 0.14 +1.6
166,127 + BACOVA_01957 0.22 -0.1
166,161 + BACOVA_01957 0.25 -0.0
166,162 - BACOVA_01957 0.25 -1.9
166,162 - BACOVA_01957 0.25 +0.3
166,169 - BACOVA_01957 0.26 +1.5
166,209 + BACOVA_01957 0.29 +0.7
166,210 - BACOVA_01957 0.29 +1.4
166,226 + BACOVA_01957 0.31 +0.4
166,285 + BACOVA_01957 0.37 +0.5
166,286 - BACOVA_01957 0.37 -0.1
166,286 - BACOVA_01957 0.37 +0.8
166,290 + BACOVA_01957 0.37 -0.9
166,316 - BACOVA_01957 0.39 +0.9
166,316 - BACOVA_01957 0.39 -1.1
166,316 - BACOVA_01957 0.39 +0.3
166,321 + BACOVA_01957 0.40 +0.6
166,322 - BACOVA_01957 0.40 +0.1
166,322 - BACOVA_01957 0.40 -0.2
166,354 - BACOVA_01957 0.43 +0.2
166,354 - BACOVA_01957 0.43 +0.8
166,357 + BACOVA_01957 0.43 +0.6
166,417 + BACOVA_01957 0.49 +0.7
166,418 - BACOVA_01957 0.49 -0.2
166,418 - BACOVA_01957 0.49 +0.2
166,420 - BACOVA_01957 0.49 +0.7
166,437 - BACOVA_01957 0.51 +0.6
166,551 - BACOVA_01957 0.62 +0.2
166,565 + BACOVA_01957 0.63 -0.3
166,565 + BACOVA_01957 0.63 +0.6
166,566 - BACOVA_01957 0.63 -0.1
166,569 + BACOVA_01957 0.63 +0.8
166,569 + BACOVA_01957 0.63 -0.3
166,647 - BACOVA_01957 0.71 +0.5
166,647 - BACOVA_01957 0.71 +0.1
166,671 + BACOVA_01957 0.73 +1.5
166,671 + BACOVA_01957 0.73 -0.7
166,671 + BACOVA_01957 0.73 +0.3
166,671 + BACOVA_01957 0.73 +0.4
166,672 - BACOVA_01957 0.73 +0.1
166,672 - BACOVA_01957 0.73 +0.6
166,672 - BACOVA_01957 0.73 -0.1
166,698 - BACOVA_01957 0.76 -0.3
166,820 + BACOVA_01957 0.87 +0.9
166,875 - +0.0
166,875 - +0.3
166,993 + +1.1
166,993 + +0.3
166,993 + -1.1
166,993 + +1.3
166,993 + -0.1
166,994 - +0.3
166,994 - -0.6
167,000 + BACOVA_01958 0.10 -0.1
167,000 + BACOVA_01958 0.10 -0.2
167,001 - BACOVA_01958 0.10 +0.7
167,001 - BACOVA_01958 0.10 -0.3
167,002 + BACOVA_01958 0.10 -0.1
167,015 + BACOVA_01958 0.12 +0.1
167,104 + BACOVA_01958 0.20 -0.4
167,126 - BACOVA_01958 0.23 -0.2
167,126 - BACOVA_01958 0.23 +0.9
167,128 - BACOVA_01958 0.23 +0.9
167,154 - BACOVA_01958 0.25 +0.4
167,166 + BACOVA_01958 0.27 +0.1
167,238 - BACOVA_01958 0.34 -0.8
167,238 - BACOVA_01958 0.34 +0.3
167,238 - BACOVA_01958 0.34 -0.7
167,242 + BACOVA_01958 0.34 +0.7
167,242 + BACOVA_01958 0.34 -0.5
167,302 + BACOVA_01958 0.40 -0.2
167,302 + BACOVA_01958 0.40 -0.3
167,303 - BACOVA_01958 0.40 +0.0
167,304 + BACOVA_01958 0.40 -0.7
167,378 - BACOVA_01958 0.47 +1.5
167,453 - BACOVA_01958 0.55 -1.0
167,458 + BACOVA_01958 0.55 +0.6
167,459 - BACOVA_01958 0.55 -0.6
167,459 - BACOVA_01958 0.55 +0.1
167,503 + BACOVA_01958 0.60 +0.7
167,504 + BACOVA_01958 0.60 -0.7
167,521 + BACOVA_01958 0.62 +0.2
167,531 + BACOVA_01958 0.63 -1.7
167,531 + BACOVA_01958 0.63 -1.3
167,532 - BACOVA_01958 0.63 +1.0
167,532 - BACOVA_01958 0.63 -0.1
167,539 + BACOVA_01958 0.63 -1.7
167,540 - BACOVA_01958 0.64 -0.9
167,540 - BACOVA_01958 0.64 -0.5
167,640 - BACOVA_01958 0.73 +0.1
167,705 + BACOVA_01958 0.80 +0.0
167,706 - BACOVA_01958 0.80 +0.3
167,753 - BACOVA_01958 0.85 -0.1
167,755 + BACOVA_01958 0.85 +0.2
167,756 - BACOVA_01958 0.85 +0.9
167,804 + BACOVA_01958 0.90 -0.6
167,804 + BACOVA_01958 0.90 +0.1
167,805 - BACOVA_01958 0.90 +0.2
167,823 + -0.0
167,892 - +0.4
167,941 - -0.3
168,002 + +0.1
168,007 + -0.0
168,031 + -1.1
168,032 - -2.0
168,098 + -5.0
168,104 + -4.0
168,104 + -1.3
168,105 - -4.2
168,105 - -3.2
168,105 - -4.0
168,105 - -1.3
168,105 - -3.6
168,106 + -3.7
168,107 - -1.9
168,111 + -4.4
168,128 + -1.7
168,128 + -2.9
168,128 + -2.4
168,129 - -4.3
168,269 - BACOVA_01959 0.15 -3.1
168,269 - BACOVA_01959 0.15 -1.3
168,272 + BACOVA_01959 0.15 -3.1
168,273 - BACOVA_01959 0.15 -4.3
168,320 + BACOVA_01959 0.18 -3.0
168,351 + BACOVA_01959 0.20 -2.4
168,358 - BACOVA_01959 0.20 -1.9
168,406 + BACOVA_01959 0.24 -3.5
168,530 + BACOVA_01959 0.32 -2.3
168,530 + BACOVA_01959 0.32 -2.7
168,530 + BACOVA_01959 0.32 -5.1
168,533 + BACOVA_01959 0.32 -5.5
168,549 + BACOVA_01959 0.33 -3.7
168,710 + BACOVA_01959 0.43 -5.2
168,761 + BACOVA_01959 0.47 -3.2
168,762 - BACOVA_01959 0.47 -2.6
168,824 - BACOVA_01959 0.51 -2.9
168,824 - BACOVA_01959 0.51 -3.3
168,833 + BACOVA_01959 0.52 -5.8
168,856 + BACOVA_01959 0.53 -3.9
168,856 + BACOVA_01959 0.53 -3.3
168,857 - BACOVA_01959 0.53 -4.4
168,857 - BACOVA_01959 0.53 -4.0
168,861 - BACOVA_01959 0.53 -0.7
168,868 + BACOVA_01959 0.54 -2.1
168,868 + BACOVA_01959 0.54 -2.7
168,868 + BACOVA_01959 0.54 -4.9
168,868 + BACOVA_01959 0.54 -4.5
168,869 - BACOVA_01959 0.54 -0.3
168,869 - BACOVA_01959 0.54 -4.0
168,869 - BACOVA_01959 0.54 -2.7

Or see this region's nucleotide sequence