Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05514

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05513 and BACOVA_05514 are separated by 74 nucleotidesBACOVA_05514 and BACOVA_05515 are separated by 38 nucleotidesBACOVA_05515 and BACOVA_05516 are separated by 44 nucleotides BACOVA_05513: BACOVA_05513 - hypothetical protein, at 1,024,074 to 1,025,735 _05513 BACOVA_05514: BACOVA_05514 - hypothetical protein, at 1,025,810 to 1,026,001 _05514 BACOVA_05515: BACOVA_05515 - hypothetical protein, at 1,026,040 to 1,026,489 _05515 BACOVA_05516: BACOVA_05516 - hypothetical protein, at 1,026,534 to 1,027,661 _05516 Position (kb) 1025 1026 1027Strain fitness (log2 ratio) -2 -1 0 1 2at 1025.879 kb on + strand, within BACOVA_05514at 1025.879 kb on + strand, within BACOVA_05514at 1025.879 kb on + strand, within BACOVA_05514at 1025.879 kb on + strand, within BACOVA_05514at 1025.879 kb on + strand, within BACOVA_05514at 1025.879 kb on + strand, within BACOVA_05514at 1025.881 kb on + strand, within BACOVA_05514at 1025.881 kb on + strand, within BACOVA_05514at 1025.902 kb on - strand, within BACOVA_05514at 1025.902 kb on - strand, within BACOVA_05514at 1025.902 kb on - strand, within BACOVA_05514at 1026.021 kb on + strandat 1026.021 kb on + strandat 1026.039 kb on + strandat 1026.039 kb on + strandat 1026.043 kb on + strandat 1026.043 kb on + strandat 1026.044 kb on - strandat 1026.044 kb on - strandat 1026.044 kb on - strandat 1026.044 kb on - strandat 1026.050 kb on - strandat 1026.138 kb on + strand, within BACOVA_05515at 1026.143 kb on + strand, within BACOVA_05515at 1026.175 kb on - strand, within BACOVA_05515at 1026.208 kb on - strand, within BACOVA_05515at 1026.237 kb on - strand, within BACOVA_05515at 1026.243 kb on + strand, within BACOVA_05515at 1026.246 kb on - strand, within BACOVA_05515at 1026.251 kb on + strand, within BACOVA_05515at 1026.252 kb on - strand, within BACOVA_05515at 1026.256 kb on - strand, within BACOVA_05515at 1026.264 kb on + strand, within BACOVA_05515at 1026.265 kb on - strand, within BACOVA_05515at 1026.325 kb on - strand, within BACOVA_05515at 1026.330 kb on + strand, within BACOVA_05515at 1026.340 kb on - strand, within BACOVA_05515at 1026.345 kb on + strand, within BACOVA_05515at 1026.346 kb on - strand, within BACOVA_05515at 1026.359 kb on + strand, within BACOVA_05515at 1026.360 kb on - strand, within BACOVA_05515at 1026.390 kb on + strand, within BACOVA_05515at 1026.393 kb on + strand, within BACOVA_05515at 1026.405 kb on + strand, within BACOVA_05515at 1026.415 kb on - strand, within BACOVA_05515at 1026.528 kb on - strandat 1026.561 kb on + strandat 1026.562 kb on - strandat 1026.570 kb on - strandat 1026.570 kb on - strandat 1026.574 kb on - strandat 1026.574 kb on - strandat 1026.574 kb on - strandat 1026.587 kb on - strandat 1026.587 kb on - strandat 1026.594 kb on + strandat 1026.605 kb on + strandat 1026.627 kb on + strandat 1026.637 kb on + strandat 1026.642 kb on - strandat 1026.828 kb on - strand, within BACOVA_05516at 1026.859 kb on + strand, within BACOVA_05516at 1026.869 kb on + strand, within BACOVA_05516at 1026.870 kb on - strand, within BACOVA_05516at 1026.894 kb on - strand, within BACOVA_05516at 1026.894 kb on - strand, within BACOVA_05516at 1026.903 kb on - strand, within BACOVA_05516at 1026.914 kb on - strand, within BACOVA_05516at 1026.939 kb on + strand, within BACOVA_05516at 1026.940 kb on - strand, within BACOVA_05516at 1026.940 kb on - strand, within BACOVA_05516at 1026.941 kb on + strand, within BACOVA_05516at 1026.942 kb on - strand, within BACOVA_05516at 1026.952 kb on - strand, within BACOVA_05516at 1026.952 kb on - strand, within BACOVA_05516at 1026.966 kb on - strand, within BACOVA_05516at 1026.984 kb on - strand, within BACOVA_05516at 1027.001 kb on + strand, within BACOVA_05516

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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1,025,879 + BACOVA_05514 0.36 -0.9
1,025,879 + BACOVA_05514 0.36 +0.6
1,025,879 + BACOVA_05514 0.36 +1.6
1,025,879 + BACOVA_05514 0.36 -0.3
1,025,879 + BACOVA_05514 0.36 +1.6
1,025,879 + BACOVA_05514 0.36 -0.6
1,025,881 + BACOVA_05514 0.37 +0.8
1,025,881 + BACOVA_05514 0.37 +0.8
1,025,902 - BACOVA_05514 0.48 -1.0
1,025,902 - BACOVA_05514 0.48 +0.9
1,025,902 - BACOVA_05514 0.48 -1.4
1,026,021 + +1.0
1,026,021 + +2.0
1,026,039 + +0.6
1,026,039 + -0.9
1,026,043 + +2.6
1,026,043 + +2.6
1,026,044 - +0.6
1,026,044 - -0.4
1,026,044 - +0.2
1,026,044 - -0.3
1,026,050 - -0.6
1,026,138 + BACOVA_05515 0.22 +0.6
1,026,143 + BACOVA_05515 0.23 +0.2
1,026,175 - BACOVA_05515 0.30 +2.6
1,026,208 - BACOVA_05515 0.37 -0.9
1,026,237 - BACOVA_05515 0.44 -1.4
1,026,243 + BACOVA_05515 0.45 -0.0
1,026,246 - BACOVA_05515 0.46 +1.6
1,026,251 + BACOVA_05515 0.47 +2.6
1,026,252 - BACOVA_05515 0.47 -0.6
1,026,256 - BACOVA_05515 0.48 -0.9
1,026,264 + BACOVA_05515 0.50 -1.1
1,026,265 - BACOVA_05515 0.50 -1.0
1,026,325 - BACOVA_05515 0.63 -0.7
1,026,330 + BACOVA_05515 0.64 +1.0
1,026,340 - BACOVA_05515 0.67 -0.5
1,026,345 + BACOVA_05515 0.68 -0.0
1,026,346 - BACOVA_05515 0.68 -0.1
1,026,359 + BACOVA_05515 0.71 +2.6
1,026,360 - BACOVA_05515 0.71 +0.6
1,026,390 + BACOVA_05515 0.78 +0.9
1,026,393 + BACOVA_05515 0.78 +1.0
1,026,405 + BACOVA_05515 0.81 -0.3
1,026,415 - BACOVA_05515 0.83 +0.6
1,026,528 - -0.2
1,026,561 + +2.0
1,026,562 - -0.1
1,026,570 - +2.0
1,026,570 - -1.4
1,026,574 - +0.2
1,026,574 - -0.6
1,026,574 - +1.3
1,026,587 - -2.4
1,026,587 - -0.7
1,026,594 + +1.6
1,026,605 + +1.0
1,026,627 + +1.0
1,026,637 + +0.6
1,026,642 - +1.6
1,026,828 - BACOVA_05516 0.26 -0.0
1,026,859 + BACOVA_05516 0.29 -0.5
1,026,869 + BACOVA_05516 0.30 -0.2
1,026,870 - BACOVA_05516 0.30 +0.6
1,026,894 - BACOVA_05516 0.32 -0.2
1,026,894 - BACOVA_05516 0.32 -1.9
1,026,903 - BACOVA_05516 0.33 -1.6
1,026,914 - BACOVA_05516 0.34 +1.2
1,026,939 + BACOVA_05516 0.36 -0.8
1,026,940 - BACOVA_05516 0.36 +1.6
1,026,940 - BACOVA_05516 0.36 -0.3
1,026,941 + BACOVA_05516 0.36 +1.0
1,026,942 - BACOVA_05516 0.36 -0.7
1,026,952 - BACOVA_05516 0.37 +0.6
1,026,952 - BACOVA_05516 0.37 +0.1
1,026,966 - BACOVA_05516 0.38 -0.8
1,026,984 - BACOVA_05516 0.40 -1.0
1,027,001 + BACOVA_05516 0.41 -0.9

Or see this region's nucleotide sequence