Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05150

Experiment: D-Arabinose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_05149 and BACOVA_05150 are separated by 124 nucleotidesBACOVA_05150 and BACOVA_05151 are separated by 67 nucleotidesBACOVA_05151 and BACOVA_05152 are separated by 34 nucleotides BACOVA_05149: BACOVA_05149 - TonB-linked outer membrane protein, SusC/RagA family, at 627,473 to 630,955 _05149 BACOVA_05150: BACOVA_05150 - sigma factor regulatory protein, FecR/PupR family, at 631,080 to 632,240 _05150 BACOVA_05151: BACOVA_05151 - RNA polymerase sigma-70 factor, at 632,308 to 632,862 _05151 BACOVA_05152: BACOVA_05152 - cyclic nucleotide-binding domain protein, at 632,897 to 633,598 _05152 Position (kb) 631 632 633Strain fitness (log2 ratio) -2 -1 0 1 2at 630.091 kb on + strand, within BACOVA_05149at 630.212 kb on + strand, within BACOVA_05149at 630.213 kb on - strand, within BACOVA_05149at 630.216 kb on - strand, within BACOVA_05149at 630.247 kb on + strand, within BACOVA_05149at 630.248 kb on - strand, within BACOVA_05149at 630.248 kb on - strand, within BACOVA_05149at 630.284 kb on + strand, within BACOVA_05149at 630.298 kb on + strand, within BACOVA_05149at 630.299 kb on - strand, within BACOVA_05149at 630.299 kb on - strand, within BACOVA_05149at 630.332 kb on + strand, within BACOVA_05149at 630.333 kb on - strand, within BACOVA_05149at 630.347 kb on - strand, within BACOVA_05149at 630.394 kb on + strand, within BACOVA_05149at 630.394 kb on + strand, within BACOVA_05149at 630.395 kb on - strand, within BACOVA_05149at 630.395 kb on - strand, within BACOVA_05149at 630.453 kb on - strand, within BACOVA_05149at 630.507 kb on + strand, within BACOVA_05149at 630.547 kb on + strand, within BACOVA_05149at 630.620 kb on - strandat 630.620 kb on - strandat 630.640 kb on + strandat 630.718 kb on + strandat 630.719 kb on - strandat 630.754 kb on + strandat 630.853 kb on + strandat 630.853 kb on + strandat 630.853 kb on + strandat 630.854 kb on - strandat 630.854 kb on - strandat 630.854 kb on - strandat 630.882 kb on + strandat 630.981 kb on - strandat 631.014 kb on + strandat 631.015 kb on - strandat 631.020 kb on - strandat 631.025 kb on - strandat 631.062 kb on + strandat 631.068 kb on + strandat 631.071 kb on + strandat 631.075 kb on + strandat 631.076 kb on - strandat 631.081 kb on + strandat 631.091 kb on - strandat 631.146 kb on - strandat 631.262 kb on - strand, within BACOVA_05150at 631.339 kb on - strand, within BACOVA_05150at 631.358 kb on + strand, within BACOVA_05150at 631.370 kb on + strand, within BACOVA_05150at 631.371 kb on - strand, within BACOVA_05150at 631.375 kb on + strand, within BACOVA_05150at 631.375 kb on + strand, within BACOVA_05150at 631.376 kb on - strand, within BACOVA_05150at 631.379 kb on + strand, within BACOVA_05150at 631.379 kb on + strand, within BACOVA_05150at 631.379 kb on + strand, within BACOVA_05150at 631.380 kb on - strand, within BACOVA_05150at 631.380 kb on - strand, within BACOVA_05150at 631.380 kb on - strand, within BACOVA_05150at 631.431 kb on + strand, within BACOVA_05150at 631.446 kb on + strand, within BACOVA_05150at 631.447 kb on - strand, within BACOVA_05150at 631.463 kb on + strand, within BACOVA_05150at 631.485 kb on + strand, within BACOVA_05150at 631.520 kb on + strand, within BACOVA_05150at 631.520 kb on + strand, within BACOVA_05150at 631.520 kb on + strand, within BACOVA_05150at 631.521 kb on - strand, within BACOVA_05150at 631.521 kb on - strand, within BACOVA_05150at 631.710 kb on + strand, within BACOVA_05150at 631.773 kb on - strand, within BACOVA_05150at 631.815 kb on - strand, within BACOVA_05150at 631.916 kb on - strand, within BACOVA_05150at 631.916 kb on - strand, within BACOVA_05150at 631.916 kb on - strand, within BACOVA_05150at 631.925 kb on - strand, within BACOVA_05150at 631.936 kb on - strand, within BACOVA_05150at 631.941 kb on + strand, within BACOVA_05150at 631.948 kb on - strand, within BACOVA_05150at 631.948 kb on - strand, within BACOVA_05150at 631.964 kb on - strand, within BACOVA_05150at 631.964 kb on - strand, within BACOVA_05150at 632.024 kb on - strand, within BACOVA_05150at 632.065 kb on - strand, within BACOVA_05150at 632.084 kb on - strand, within BACOVA_05150at 632.097 kb on + strand, within BACOVA_05150at 632.113 kb on - strand, within BACOVA_05150at 632.152 kb on + strandat 632.317 kb on + strandat 632.459 kb on + strand, within BACOVA_05151at 632.460 kb on - strand, within BACOVA_05151at 632.462 kb on - strand, within BACOVA_05151at 632.557 kb on - strand, within BACOVA_05151at 632.583 kb on - strand, within BACOVA_05151at 632.608 kb on + strand, within BACOVA_05151at 632.643 kb on - strand, within BACOVA_05151at 632.707 kb on + strand, within BACOVA_05151at 632.750 kb on + strand, within BACOVA_05151at 632.776 kb on - strand, within BACOVA_05151at 632.776 kb on - strand, within BACOVA_05151at 632.780 kb on + strand, within BACOVA_05151at 632.780 kb on + strand, within BACOVA_05151at 632.781 kb on - strand, within BACOVA_05151at 632.783 kb on + strand, within BACOVA_05151at 632.784 kb on - strand, within BACOVA_05151at 632.784 kb on - strand, within BACOVA_05151at 632.794 kb on + strand, within BACOVA_05151at 632.795 kb on - strand, within BACOVA_05151at 632.828 kb on - strandat 632.840 kb on - strandat 632.850 kb on + strandat 632.854 kb on + strandat 632.854 kb on + strandat 632.854 kb on + strandat 632.855 kb on - strandat 632.855 kb on - strandat 632.855 kb on - strandat 632.855 kb on - strandat 632.855 kb on - strandat 632.867 kb on + strandat 632.898 kb on + strandat 633.226 kb on + strand, within BACOVA_05152

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
remove
630,091 + BACOVA_05149 0.75 -0.5
630,212 + BACOVA_05149 0.79 +1.1
630,213 - BACOVA_05149 0.79 -1.4
630,216 - BACOVA_05149 0.79 +0.1
630,247 + BACOVA_05149 0.80 -0.2
630,248 - BACOVA_05149 0.80 +0.3
630,248 - BACOVA_05149 0.80 -0.7
630,284 + BACOVA_05149 0.81 +1.3
630,298 + BACOVA_05149 0.81 -1.1
630,299 - BACOVA_05149 0.81 -1.6
630,299 - BACOVA_05149 0.81 +0.1
630,332 + BACOVA_05149 0.82 -0.1
630,333 - BACOVA_05149 0.82 +1.0
630,347 - BACOVA_05149 0.83 -1.0
630,394 + BACOVA_05149 0.84 +0.3
630,394 + BACOVA_05149 0.84 +0.1
630,395 - BACOVA_05149 0.84 -0.8
630,395 - BACOVA_05149 0.84 -1.1
630,453 - BACOVA_05149 0.86 +2.6
630,507 + BACOVA_05149 0.87 +0.5
630,547 + BACOVA_05149 0.88 -0.6
630,620 - -0.0
630,620 - +0.1
630,640 + -0.8
630,718 + +0.9
630,719 - +0.1
630,754 + -0.7
630,853 + -0.8
630,853 + +1.1
630,853 + -0.9
630,854 - -1.9
630,854 - -0.9
630,854 - -0.5
630,882 + -0.9
630,981 - +1.1
631,014 + +0.1
631,015 - +0.6
631,020 - -1.6
631,025 - -0.1
631,062 + -0.1
631,068 + +0.2
631,071 + -0.2
631,075 + -0.1
631,076 - -0.6
631,081 + +0.3
631,091 - +0.6
631,146 - +0.1
631,262 - BACOVA_05150 0.16 +0.1
631,339 - BACOVA_05150 0.22 -0.5
631,358 + BACOVA_05150 0.24 -0.5
631,370 + BACOVA_05150 0.25 +1.7
631,371 - BACOVA_05150 0.25 -0.2
631,375 + BACOVA_05150 0.25 -0.5
631,375 + BACOVA_05150 0.25 +0.3
631,376 - BACOVA_05150 0.25 +1.1
631,379 + BACOVA_05150 0.26 -1.3
631,379 + BACOVA_05150 0.26 -0.2
631,379 + BACOVA_05150 0.26 -0.9
631,380 - BACOVA_05150 0.26 +1.1
631,380 - BACOVA_05150 0.26 +0.3
631,380 - BACOVA_05150 0.26 +2.6
631,431 + BACOVA_05150 0.30 -0.4
631,446 + BACOVA_05150 0.32 +0.3
631,447 - BACOVA_05150 0.32 +0.9
631,463 + BACOVA_05150 0.33 +2.6
631,485 + BACOVA_05150 0.35 +1.3
631,520 + BACOVA_05150 0.38 -0.2
631,520 + BACOVA_05150 0.38 +0.1
631,520 + BACOVA_05150 0.38 +0.4
631,521 - BACOVA_05150 0.38 -0.6
631,521 - BACOVA_05150 0.38 -1.6
631,710 + BACOVA_05150 0.54 +0.1
631,773 - BACOVA_05150 0.60 +0.3
631,815 - BACOVA_05150 0.63 +1.6
631,916 - BACOVA_05150 0.72 -0.9
631,916 - BACOVA_05150 0.72 +2.6
631,916 - BACOVA_05150 0.72 -1.4
631,925 - BACOVA_05150 0.73 -0.1
631,936 - BACOVA_05150 0.74 +1.6
631,941 + BACOVA_05150 0.74 -0.7
631,948 - BACOVA_05150 0.75 +0.1
631,948 - BACOVA_05150 0.75 +0.1
631,964 - BACOVA_05150 0.76 +1.1
631,964 - BACOVA_05150 0.76 +1.1
632,024 - BACOVA_05150 0.81 -1.3
632,065 - BACOVA_05150 0.85 +0.1
632,084 - BACOVA_05150 0.86 +0.3
632,097 + BACOVA_05150 0.88 +0.2
632,113 - BACOVA_05150 0.89 +2.6
632,152 + -1.8
632,317 + -1.5
632,459 + BACOVA_05151 0.27 -2.3
632,460 - BACOVA_05151 0.27 -1.1
632,462 - BACOVA_05151 0.28 -0.7
632,557 - BACOVA_05151 0.45 -1.3
632,583 - BACOVA_05151 0.50 +0.3
632,608 + BACOVA_05151 0.54 +0.6
632,643 - BACOVA_05151 0.60 -0.2
632,707 + BACOVA_05151 0.72 -0.4
632,750 + BACOVA_05151 0.80 -0.8
632,776 - BACOVA_05151 0.84 -0.5
632,776 - BACOVA_05151 0.84 -0.1
632,780 + BACOVA_05151 0.85 -1.2
632,780 + BACOVA_05151 0.85 -0.9
632,781 - BACOVA_05151 0.85 -1.9
632,783 + BACOVA_05151 0.86 -0.2
632,784 - BACOVA_05151 0.86 +0.8
632,784 - BACOVA_05151 0.86 -0.5
632,794 + BACOVA_05151 0.88 +0.3
632,795 - BACOVA_05151 0.88 +1.3
632,828 - -0.8
632,840 - -0.7
632,850 + -0.2
632,854 + -0.2
632,854 + +0.1
632,854 + -0.9
632,855 - +2.6
632,855 - -1.5
632,855 - +0.1
632,855 - -1.2
632,855 - -0.3
632,867 + -0.5
632,898 + -0.4
633,226 + BACOVA_05152 0.47 +1.1

Or see this region's nucleotide sequence