Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05127 and BACOVA_05128 are separated by 28 nucleotides BACOVA_05128 and BACOVA_05129 are separated by 20 nucleotides BACOVA_05129 and BACOVA_05130 are separated by 21 nucleotides BACOVA_05130 and BACOVA_05131 are separated by 8 nucleotides
BACOVA_05127: BACOVA_05127 - hypothetical protein, at 602,192 to 603,457
_05127
BACOVA_05128: BACOVA_05128 - ABC transporter, ATP-binding protein, at 603,486 to 604,130
_05128
BACOVA_05129: BACOVA_05129 - hypothetical protein, at 604,151 to 605,728
_05129
BACOVA_05130: BACOVA_05130 - RNA methyltransferase, RsmE family, at 605,750 to 606,448
_05130
BACOVA_05131: BACOVA_05131 - hypothetical protein, at 606,457 to 607,050
_05131
Position (kb) 604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 603.172 kb on + strand, within BACOVA_05127 at 603.172 kb on + strand, within BACOVA_05127 at 603.173 kb on - strand, within BACOVA_05127 at 603.176 kb on - strand, within BACOVA_05127 at 603.176 kb on - strand, within BACOVA_05127 at 603.218 kb on - strand, within BACOVA_05127 at 603.221 kb on + strand, within BACOVA_05127 at 603.222 kb on - strand, within BACOVA_05127 at 603.222 kb on - strand, within BACOVA_05127 at 603.291 kb on - strand, within BACOVA_05127 at 603.295 kb on + strand, within BACOVA_05127 at 603.296 kb on - strand, within BACOVA_05127 at 603.303 kb on - strand, within BACOVA_05127 at 603.320 kb on + strand, within BACOVA_05127 at 603.361 kb on + strand at 603.362 kb on - strand at 603.458 kb on + strand at 603.458 kb on + strand at 603.459 kb on - strand at 603.459 kb on - strand at 603.473 kb on - strand at 603.484 kb on + strand at 603.484 kb on + strand at 603.485 kb on - strand at 603.485 kb on - strand at 603.501 kb on - strand at 603.501 kb on - strand at 603.509 kb on - strand at 603.605 kb on + strand, within BACOVA_05128 at 603.763 kb on - strand, within BACOVA_05128 at 603.797 kb on + strand, within BACOVA_05128 at 603.827 kb on + strand, within BACOVA_05128 at 603.847 kb on - strand, within BACOVA_05128 at 603.868 kb on - strand, within BACOVA_05128 at 603.907 kb on + strand, within BACOVA_05128 at 603.967 kb on + strand, within BACOVA_05128 at 603.967 kb on + strand, within BACOVA_05128 at 603.968 kb on - strand, within BACOVA_05128 at 603.971 kb on + strand, within BACOVA_05128 at 603.972 kb on - strand, within BACOVA_05128 at 603.972 kb on - strand, within BACOVA_05128 at 603.973 kb on + strand, within BACOVA_05128 at 603.974 kb on - strand, within BACOVA_05128 at 604.013 kb on - strand, within BACOVA_05128 at 604.021 kb on + strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.122 kb on - strand at 604.122 kb on - strand at 604.124 kb on + strand at 604.124 kb on + strand at 604.125 kb on - strand at 604.141 kb on + strand at 604.143 kb on + strand at 604.149 kb on + strand at 604.152 kb on + strand at 604.152 kb on + strand at 604.153 kb on - strand at 604.203 kb on - strand at 604.203 kb on - strand at 604.291 kb on + strand at 604.292 kb on - strand at 604.293 kb on + strand at 604.293 kb on + strand at 604.300 kb on + strand at 604.300 kb on + strand at 604.375 kb on + strand, within BACOVA_05129 at 604.376 kb on - strand, within BACOVA_05129 at 604.376 kb on - strand, within BACOVA_05129 at 604.380 kb on - strand, within BACOVA_05129 at 604.408 kb on - strand, within BACOVA_05129 at 604.461 kb on - strand, within BACOVA_05129 at 604.480 kb on - strand, within BACOVA_05129 at 604.510 kb on + strand, within BACOVA_05129 at 604.511 kb on - strand, within BACOVA_05129 at 604.511 kb on - strand, within BACOVA_05129 at 604.531 kb on - strand, within BACOVA_05129 at 604.531 kb on - strand, within BACOVA_05129 at 604.531 kb on - strand, within BACOVA_05129 at 604.537 kb on - strand, within BACOVA_05129 at 604.537 kb on - strand, within BACOVA_05129 at 604.537 kb on - strand, within BACOVA_05129 at 604.603 kb on - strand, within BACOVA_05129 at 604.641 kb on + strand, within BACOVA_05129 at 604.642 kb on - strand, within BACOVA_05129 at 604.674 kb on - strand, within BACOVA_05129 at 604.728 kb on - strand, within BACOVA_05129 at 604.728 kb on - strand, within BACOVA_05129 at 604.741 kb on + strand, within BACOVA_05129 at 604.748 kb on - strand, within BACOVA_05129 at 604.751 kb on + strand, within BACOVA_05129 at 604.792 kb on - strand, within BACOVA_05129 at 604.848 kb on + strand, within BACOVA_05129 at 604.852 kb on + strand, within BACOVA_05129 at 604.861 kb on + strand, within BACOVA_05129 at 604.962 kb on - strand, within BACOVA_05129 at 604.979 kb on + strand, within BACOVA_05129 at 604.980 kb on - strand, within BACOVA_05129 at 605.040 kb on + strand, within BACOVA_05129 at 605.077 kb on + strand, within BACOVA_05129 at 605.077 kb on + strand, within BACOVA_05129 at 605.078 kb on - strand, within BACOVA_05129 at 605.129 kb on - strand, within BACOVA_05129 at 605.132 kb on - strand, within BACOVA_05129 at 605.132 kb on - strand, within BACOVA_05129 at 605.179 kb on + strand, within BACOVA_05129 at 605.180 kb on - strand, within BACOVA_05129 at 605.210 kb on + strand, within BACOVA_05129 at 605.211 kb on - strand, within BACOVA_05129 at 605.219 kb on - strand, within BACOVA_05129 at 605.221 kb on + strand, within BACOVA_05129 at 605.339 kb on - strand, within BACOVA_05129 at 605.368 kb on + strand, within BACOVA_05129 at 605.400 kb on + strand, within BACOVA_05129 at 605.504 kb on + strand, within BACOVA_05129 at 605.567 kb on - strand, within BACOVA_05129 at 605.567 kb on - strand, within BACOVA_05129 at 605.586 kb on - strand at 605.698 kb on + strand at 605.698 kb on + strand at 605.698 kb on + strand at 605.699 kb on - strand at 605.702 kb on + strand at 605.702 kb on + strand at 605.702 kb on + strand at 605.703 kb on - strand at 605.703 kb on - strand at 605.703 kb on - strand at 605.708 kb on - strand at 605.722 kb on + strand at 605.723 kb on - strand at 605.742 kb on + strand at 605.742 kb on + strand at 605.742 kb on + strand at 605.743 kb on - strand at 605.743 kb on - strand at 605.894 kb on + strand, within BACOVA_05130 at 605.894 kb on + strand, within BACOVA_05130 at 605.939 kb on + strand, within BACOVA_05130 at 605.940 kb on - strand, within BACOVA_05130 at 605.958 kb on + strand, within BACOVA_05130 at 605.971 kb on + strand, within BACOVA_05130 at 605.986 kb on + strand, within BACOVA_05130 at 606.109 kb on + strand, within BACOVA_05130 at 606.315 kb on + strand, within BACOVA_05130 at 606.338 kb on - strand, within BACOVA_05130 at 606.358 kb on + strand, within BACOVA_05130 at 606.359 kb on - strand, within BACOVA_05130 at 606.363 kb on - strand, within BACOVA_05130 at 606.422 kb on + strand at 606.425 kb on - strand at 606.436 kb on - strand at 606.436 kb on - strand at 606.440 kb on + strand at 606.449 kb on - strand at 606.459 kb on - strand at 606.469 kb on - strand at 606.525 kb on + strand, within BACOVA_05131 at 606.526 kb on - strand, within BACOVA_05131 at 606.529 kb on - strand, within BACOVA_05131 at 606.681 kb on + strand, within BACOVA_05131 at 606.681 kb on + strand, within BACOVA_05131
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 603,172 + BACOVA_05127 0.77 -0.3 603,172 + BACOVA_05127 0.77 -1.7 603,173 - BACOVA_05127 0.77 +0.6 603,176 - BACOVA_05127 0.78 -0.4 603,176 - BACOVA_05127 0.78 +1.6 603,218 - BACOVA_05127 0.81 +0.3 603,221 + BACOVA_05127 0.81 -1.1 603,222 - BACOVA_05127 0.81 +1.6 603,222 - BACOVA_05127 0.81 +1.1 603,291 - BACOVA_05127 0.87 -0.4 603,295 + BACOVA_05127 0.87 -0.4 603,296 - BACOVA_05127 0.87 -1.4 603,303 - BACOVA_05127 0.88 -0.7 603,320 + BACOVA_05127 0.89 +0.3 603,361 + -1.5 603,362 - +0.6 603,458 + -1.2 603,458 + -1.0 603,459 - +1.9 603,459 - +2.1 603,473 - +0.8 603,484 + +0.3 603,484 + -0.7 603,485 - -1.5 603,485 - -1.3 603,501 - +1.6 603,501 - -2.1 603,509 - -0.9 603,605 + BACOVA_05128 0.18 +0.3 603,763 - BACOVA_05128 0.43 -0.2 603,797 + BACOVA_05128 0.48 -0.5 603,827 + BACOVA_05128 0.53 -1.9 603,847 - BACOVA_05128 0.56 +1.1 603,868 - BACOVA_05128 0.59 +0.2 603,907 + BACOVA_05128 0.65 +2.6 603,967 + BACOVA_05128 0.75 -0.5 603,967 + BACOVA_05128 0.75 -0.1 603,968 - BACOVA_05128 0.75 +0.1 603,971 + BACOVA_05128 0.75 -0.4 603,972 - BACOVA_05128 0.75 +0.3 603,972 - BACOVA_05128 0.75 +1.6 603,973 + BACOVA_05128 0.76 +0.3 603,974 - BACOVA_05128 0.76 -2.0 604,013 - BACOVA_05128 0.82 -0.5 604,021 + BACOVA_05128 0.83 -0.4 604,022 - BACOVA_05128 0.83 -0.5 604,022 - BACOVA_05128 0.83 -0.7 604,022 - BACOVA_05128 0.83 -1.2 604,122 - -1.1 604,122 - -0.5 604,124 + -0.8 604,124 + -1.7 604,125 - +0.6 604,141 + -1.2 604,143 + +0.3 604,149 + -1.4 604,152 + -0.7 604,152 + +0.3 604,153 - -0.4 604,203 - +1.2 604,203 - -0.2 604,291 + -0.4 604,292 - -1.1 604,293 + +0.5 604,293 + +0.3 604,300 + +1.3 604,300 + +0.1 604,375 + BACOVA_05129 0.14 -1.9 604,376 - BACOVA_05129 0.14 -0.7 604,376 - BACOVA_05129 0.14 +0.4 604,380 - BACOVA_05129 0.15 -0.4 604,408 - BACOVA_05129 0.16 +1.2 604,461 - BACOVA_05129 0.20 +0.1 604,480 - BACOVA_05129 0.21 -0.3 604,510 + BACOVA_05129 0.23 -0.4 604,511 - BACOVA_05129 0.23 +0.1 604,511 - BACOVA_05129 0.23 -1.4 604,531 - BACOVA_05129 0.24 -0.7 604,531 - BACOVA_05129 0.24 -0.1 604,531 - BACOVA_05129 0.24 -1.4 604,537 - BACOVA_05129 0.24 +0.3 604,537 - BACOVA_05129 0.24 +0.6 604,537 - BACOVA_05129 0.24 -2.7 604,603 - BACOVA_05129 0.29 -2.2 604,641 + BACOVA_05129 0.31 +1.2 604,642 - BACOVA_05129 0.31 +0.9 604,674 - BACOVA_05129 0.33 -0.2 604,728 - BACOVA_05129 0.37 -0.7 604,728 - BACOVA_05129 0.37 +0.5 604,741 + BACOVA_05129 0.37 +0.6 604,748 - BACOVA_05129 0.38 +1.3 604,751 + BACOVA_05129 0.38 +0.7 604,792 - BACOVA_05129 0.41 +0.6 604,848 + BACOVA_05129 0.44 -1.4 604,852 + BACOVA_05129 0.44 -1.1 604,861 + BACOVA_05129 0.45 -0.4 604,962 - BACOVA_05129 0.51 -0.9 604,979 + BACOVA_05129 0.52 -1.0 604,980 - BACOVA_05129 0.53 -0.8 605,040 + BACOVA_05129 0.56 +1.1 605,077 + BACOVA_05129 0.59 +0.5 605,077 + BACOVA_05129 0.59 -0.4 605,078 - BACOVA_05129 0.59 +0.6 605,129 - BACOVA_05129 0.62 +0.1 605,132 - BACOVA_05129 0.62 -0.2 605,132 - BACOVA_05129 0.62 -0.6 605,179 + BACOVA_05129 0.65 -1.4 605,180 - BACOVA_05129 0.65 +1.1 605,210 + BACOVA_05129 0.67 -0.5 605,211 - BACOVA_05129 0.67 -1.2 605,219 - BACOVA_05129 0.68 -0.4 605,221 + BACOVA_05129 0.68 +4.7 605,339 - BACOVA_05129 0.75 +0.3 605,368 + BACOVA_05129 0.77 -0.4 605,400 + BACOVA_05129 0.79 +1.1 605,504 + BACOVA_05129 0.86 +0.6 605,567 - BACOVA_05129 0.90 +0.8 605,567 - BACOVA_05129 0.90 -2.1 605,586 - -1.4 605,698 + -0.5 605,698 + -1.4 605,698 + +1.1 605,699 - -0.2 605,702 + +1.5 605,702 + -1.0 605,702 + +0.1 605,703 - -1.7 605,703 - -1.1 605,703 - -1.1 605,708 - +0.6 605,722 + -2.7 605,723 - -0.0 605,742 + +1.2 605,742 + -1.4 605,742 + -0.2 605,743 - -0.2 605,743 - -0.0 605,894 + BACOVA_05130 0.21 +0.3 605,894 + BACOVA_05130 0.21 -0.7 605,939 + BACOVA_05130 0.27 +0.6 605,940 - BACOVA_05130 0.27 +0.5 605,958 + BACOVA_05130 0.30 +1.1 605,971 + BACOVA_05130 0.32 +2.3 605,986 + BACOVA_05130 0.34 +0.1 606,109 + BACOVA_05130 0.51 -0.6 606,315 + BACOVA_05130 0.81 -0.5 606,338 - BACOVA_05130 0.84 -0.3 606,358 + BACOVA_05130 0.87 -0.8 606,359 - BACOVA_05130 0.87 +0.3 606,363 - BACOVA_05130 0.88 +0.8 606,422 + +0.6 606,425 - +0.5 606,436 - -1.3 606,436 - -1.4 606,440 + -0.9 606,449 - +1.1 606,459 - +2.0 606,469 - -0.8 606,525 + BACOVA_05131 0.11 +0.0 606,526 - BACOVA_05131 0.12 -0.4 606,529 - BACOVA_05131 0.12 -0.4 606,681 + BACOVA_05131 0.38 -1.3 606,681 + BACOVA_05131 0.38 +1.2
Or see this region's nucleotide sequence