Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04794 and BACOVA_04795 are separated by 200 nucleotides BACOVA_04795 and BACOVA_04796 are separated by 225 nucleotides BACOVA_04796 and BACOVA_04797 overlap by 1 nucleotides
BACOVA_04794: BACOVA_04794 - hypothetical protein, at 148,071 to 149,345
_04794
BACOVA_04795: BACOVA_04795 - site-specific recombinase, phage integrase family, at 149,546 to 150,604
_04795
BACOVA_04796: BACOVA_04796 - hypothetical protein, at 150,830 to 151,600
_04796
BACOVA_04797: BACOVA_04797 - hypothetical protein, at 151,600 to 152,286
_04797
Position (kb) 149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 149.169 kb on + strand, within BACOVA_04794 at 149.366 kb on - strand at 149.366 kb on - strand at 149.371 kb on - strand at 149.371 kb on - strand at 149.382 kb on - strand at 149.441 kb on + strand at 149.442 kb on - strand at 149.442 kb on - strand at 149.442 kb on - strand at 149.457 kb on + strand at 149.508 kb on - strand at 149.541 kb on - strand at 149.541 kb on - strand at 149.541 kb on - strand at 149.609 kb on + strand at 149.610 kb on - strand at 149.633 kb on + strand at 149.668 kb on + strand, within BACOVA_04795 at 149.668 kb on + strand, within BACOVA_04795 at 149.669 kb on - strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.681 kb on - strand, within BACOVA_04795 at 149.705 kb on + strand, within BACOVA_04795 at 149.766 kb on + strand, within BACOVA_04795 at 149.769 kb on - strand, within BACOVA_04795 at 149.796 kb on - strand, within BACOVA_04795 at 149.809 kb on + strand, within BACOVA_04795 at 149.809 kb on + strand, within BACOVA_04795 at 149.929 kb on + strand, within BACOVA_04795 at 149.929 kb on + strand, within BACOVA_04795 at 149.945 kb on - strand, within BACOVA_04795 at 149.954 kb on + strand, within BACOVA_04795 at 149.954 kb on + strand, within BACOVA_04795 at 149.968 kb on + strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.974 kb on + strand, within BACOVA_04795 at 149.975 kb on - strand, within BACOVA_04795 at 150.026 kb on - strand, within BACOVA_04795 at 150.035 kb on + strand, within BACOVA_04795 at 150.035 kb on + strand, within BACOVA_04795 at 150.036 kb on - strand, within BACOVA_04795 at 150.062 kb on + strand, within BACOVA_04795 at 150.063 kb on - strand, within BACOVA_04795 at 150.066 kb on - strand, within BACOVA_04795 at 150.072 kb on - strand, within BACOVA_04795 at 150.129 kb on - strand, within BACOVA_04795 at 150.211 kb on + strand, within BACOVA_04795 at 150.241 kb on - strand, within BACOVA_04795 at 150.246 kb on - strand, within BACOVA_04795 at 150.268 kb on - strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.275 kb on - strand, within BACOVA_04795 at 150.293 kb on - strand, within BACOVA_04795 at 150.319 kb on + strand, within BACOVA_04795 at 150.319 kb on + strand, within BACOVA_04795 at 150.320 kb on - strand, within BACOVA_04795 at 150.322 kb on - strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.326 kb on - strand, within BACOVA_04795 at 150.340 kb on + strand, within BACOVA_04795 at 150.340 kb on + strand, within BACOVA_04795 at 150.361 kb on + strand, within BACOVA_04795 at 150.362 kb on - strand, within BACOVA_04795 at 150.383 kb on + strand, within BACOVA_04795 at 150.389 kb on + strand, within BACOVA_04795 at 150.458 kb on - strand, within BACOVA_04795 at 150.461 kb on - strand, within BACOVA_04795 at 150.476 kb on - strand, within BACOVA_04795 at 150.477 kb on + strand, within BACOVA_04795 at 150.478 kb on - strand, within BACOVA_04795 at 150.496 kb on - strand, within BACOVA_04795 at 150.516 kb on + strand at 150.517 kb on - strand at 150.524 kb on + strand at 150.525 kb on - strand at 150.528 kb on + strand at 150.552 kb on - strand at 150.590 kb on - strand at 150.638 kb on + strand at 150.639 kb on - strand at 150.639 kb on - strand at 150.639 kb on - strand at 150.639 kb on - strand at 150.642 kb on + strand at 150.677 kb on + strand at 150.690 kb on + strand at 150.695 kb on - strand at 150.709 kb on - strand at 150.744 kb on - strand at 150.744 kb on - strand at 150.816 kb on + strand at 150.865 kb on + strand at 150.887 kb on + strand at 150.889 kb on + strand at 150.956 kb on + strand, within BACOVA_04796 at 151.000 kb on - strand, within BACOVA_04796 at 151.008 kb on + strand, within BACOVA_04796 at 151.012 kb on - strand, within BACOVA_04796 at 151.034 kb on - strand, within BACOVA_04796 at 151.037 kb on + strand, within BACOVA_04796 at 151.113 kb on + strand, within BACOVA_04796 at 151.114 kb on - strand, within BACOVA_04796 at 151.124 kb on - strand, within BACOVA_04796 at 151.235 kb on + strand, within BACOVA_04796 at 151.254 kb on - strand, within BACOVA_04796 at 151.269 kb on - strand, within BACOVA_04796 at 151.277 kb on - strand, within BACOVA_04796 at 151.279 kb on - strand, within BACOVA_04796 at 151.317 kb on + strand, within BACOVA_04796 at 151.349 kb on + strand, within BACOVA_04796 at 151.350 kb on - strand, within BACOVA_04796 at 151.355 kb on + strand, within BACOVA_04796 at 151.391 kb on + strand, within BACOVA_04796 at 151.391 kb on + strand, within BACOVA_04796 at 151.392 kb on - strand, within BACOVA_04796 at 151.467 kb on - strand, within BACOVA_04796 at 151.478 kb on + strand, within BACOVA_04796 at 151.479 kb on - strand, within BACOVA_04796 at 151.491 kb on - strand, within BACOVA_04796 at 151.572 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 149,169 + BACOVA_04794 0.86 +1.7 149,366 - -0.8 149,366 - +0.7 149,371 - -1.8 149,371 - +0.4 149,382 - +1.1 149,441 + -2.5 149,442 - +1.1 149,442 - -0.6 149,442 - -0.1 149,457 + +0.1 149,508 - -0.3 149,541 - -0.2 149,541 - +0.2 149,541 - +0.1 149,609 + -1.3 149,610 - -1.2 149,633 + +0.8 149,668 + BACOVA_04795 0.12 +0.7 149,668 + BACOVA_04795 0.12 -0.8 149,669 - BACOVA_04795 0.12 -0.8 149,672 + BACOVA_04795 0.12 -1.0 149,672 + BACOVA_04795 0.12 -1.2 149,672 + BACOVA_04795 0.12 -2.1 149,673 - BACOVA_04795 0.12 +0.4 149,673 - BACOVA_04795 0.12 -1.2 149,673 - BACOVA_04795 0.12 -0.5 149,676 + BACOVA_04795 0.12 -0.6 149,676 + BACOVA_04795 0.12 -0.7 149,676 + BACOVA_04795 0.12 +0.9 149,676 + BACOVA_04795 0.12 -1.1 149,676 + BACOVA_04795 0.12 -0.6 149,676 + BACOVA_04795 0.12 -1.6 149,676 + BACOVA_04795 0.12 -1.8 149,676 + BACOVA_04795 0.12 +1.9 149,676 + BACOVA_04795 0.12 -0.6 149,677 - BACOVA_04795 0.12 +1.4 149,677 - BACOVA_04795 0.12 -0.1 149,677 - BACOVA_04795 0.12 -0.6 149,677 - BACOVA_04795 0.12 -0.3 149,681 - BACOVA_04795 0.13 -0.9 149,705 + BACOVA_04795 0.15 -0.5 149,766 + BACOVA_04795 0.21 -0.9 149,769 - BACOVA_04795 0.21 -1.7 149,796 - BACOVA_04795 0.24 -1.1 149,809 + BACOVA_04795 0.25 -0.7 149,809 + BACOVA_04795 0.25 -0.5 149,929 + BACOVA_04795 0.36 +0.4 149,929 + BACOVA_04795 0.36 -0.8 149,945 - BACOVA_04795 0.38 -1.6 149,954 + BACOVA_04795 0.39 +1.7 149,954 + BACOVA_04795 0.39 -0.6 149,968 + BACOVA_04795 0.40 +1.1 149,969 - BACOVA_04795 0.40 +1.1 149,969 - BACOVA_04795 0.40 -0.8 149,969 - BACOVA_04795 0.40 -0.8 149,969 - BACOVA_04795 0.40 -0.4 149,974 + BACOVA_04795 0.40 -1.1 149,975 - BACOVA_04795 0.41 -1.0 150,026 - BACOVA_04795 0.45 -0.2 150,035 + BACOVA_04795 0.46 -0.1 150,035 + BACOVA_04795 0.46 -0.1 150,036 - BACOVA_04795 0.46 -1.4 150,062 + BACOVA_04795 0.49 -1.6 150,063 - BACOVA_04795 0.49 +0.4 150,066 - BACOVA_04795 0.49 -0.4 150,072 - BACOVA_04795 0.50 +0.4 150,129 - BACOVA_04795 0.55 -0.3 150,211 + BACOVA_04795 0.63 -0.4 150,241 - BACOVA_04795 0.66 -1.3 150,246 - BACOVA_04795 0.66 -0.5 150,268 - BACOVA_04795 0.68 -0.5 150,274 + BACOVA_04795 0.69 -0.3 150,274 + BACOVA_04795 0.69 -0.1 150,274 + BACOVA_04795 0.69 -0.4 150,275 - BACOVA_04795 0.69 +0.0 150,293 - BACOVA_04795 0.71 +1.1 150,319 + BACOVA_04795 0.73 +3.6 150,319 + BACOVA_04795 0.73 -1.3 150,320 - BACOVA_04795 0.73 +0.5 150,322 - BACOVA_04795 0.73 -0.4 150,325 + BACOVA_04795 0.74 +0.7 150,325 + BACOVA_04795 0.74 -1.2 150,325 + BACOVA_04795 0.74 -1.0 150,326 - BACOVA_04795 0.74 -1.8 150,340 + BACOVA_04795 0.75 -1.6 150,340 + BACOVA_04795 0.75 -1.8 150,361 + BACOVA_04795 0.77 -1.3 150,362 - BACOVA_04795 0.77 +0.4 150,383 + BACOVA_04795 0.79 +2.3 150,389 + BACOVA_04795 0.80 -1.0 150,458 - BACOVA_04795 0.86 -1.6 150,461 - BACOVA_04795 0.86 +0.4 150,476 - BACOVA_04795 0.88 -1.1 150,477 + BACOVA_04795 0.88 +0.1 150,478 - BACOVA_04795 0.88 -0.6 150,496 - BACOVA_04795 0.90 -3.3 150,516 + +1.1 150,517 - +1.4 150,524 + -0.0 150,525 - -2.1 150,528 + -1.9 150,552 - +0.3 150,590 - -0.7 150,638 + +0.5 150,639 - -0.0 150,639 - +0.2 150,639 - +0.1 150,639 - -0.0 150,642 + -1.4 150,677 + +0.7 150,690 + -0.1 150,695 - +0.4 150,709 - -1.4 150,744 - +0.9 150,744 - -1.3 150,816 + -1.8 150,865 + -1.8 150,887 + -0.5 150,889 + +1.7 150,956 + BACOVA_04796 0.16 +2.1 151,000 - BACOVA_04796 0.22 +1.1 151,008 + BACOVA_04796 0.23 +1.1 151,012 - BACOVA_04796 0.24 +0.9 151,034 - BACOVA_04796 0.26 +1.1 151,037 + BACOVA_04796 0.27 +1.1 151,113 + BACOVA_04796 0.37 -0.9 151,114 - BACOVA_04796 0.37 +1.3 151,124 - BACOVA_04796 0.38 -0.8 151,235 + BACOVA_04796 0.53 +1.7 151,254 - BACOVA_04796 0.55 -1.4 151,269 - BACOVA_04796 0.57 +3.0 151,277 - BACOVA_04796 0.58 +0.4 151,279 - BACOVA_04796 0.58 +1.1 151,317 + BACOVA_04796 0.63 +0.7 151,349 + BACOVA_04796 0.67 +1.1 151,350 - BACOVA_04796 0.67 +3.3 151,355 + BACOVA_04796 0.68 +1.7 151,391 + BACOVA_04796 0.73 +1.7 151,391 + BACOVA_04796 0.73 +1.1 151,392 - BACOVA_04796 0.73 +0.7 151,467 - BACOVA_04796 0.83 -0.9 151,478 + BACOVA_04796 0.84 +2.7 151,479 - BACOVA_04796 0.84 +1.9 151,491 - BACOVA_04796 0.86 -0.1 151,572 + +0.7
Or see this region's nucleotide sequence