Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04515 and BACOVA_04516 are separated by 134 nucleotides BACOVA_04516 and BACOVA_04517 are separated by 4 nucleotides BACOVA_04517 and BACOVA_04518 overlap by 4 nucleotides
BACOVA_04515: BACOVA_04515 - hypothetical protein, at 454,664 to 455,869
_04515
BACOVA_04516: BACOVA_04516 - peptidase C1-like family, at 456,004 to 457,188
_04516
BACOVA_04517: BACOVA_04517 - response regulator receiver domain protein, at 457,193 to 457,921
_04517
BACOVA_04518: BACOVA_04518 - histidine kinase, at 457,918 to 459,132
_04518
Position (kb) 456
457
458 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 455.090 kb on + strand, within BACOVA_04515 at 455.095 kb on + strand, within BACOVA_04515 at 455.096 kb on - strand, within BACOVA_04515 at 455.098 kb on + strand, within BACOVA_04515 at 455.099 kb on - strand, within BACOVA_04515 at 455.134 kb on + strand, within BACOVA_04515 at 455.198 kb on + strand, within BACOVA_04515 at 455.198 kb on + strand, within BACOVA_04515 at 455.199 kb on - strand, within BACOVA_04515 at 455.269 kb on + strand, within BACOVA_04515 at 455.292 kb on + strand, within BACOVA_04515 at 455.297 kb on + strand, within BACOVA_04515 at 455.297 kb on + strand, within BACOVA_04515 at 455.309 kb on - strand, within BACOVA_04515 at 455.309 kb on - strand, within BACOVA_04515 at 455.310 kb on + strand, within BACOVA_04515 at 455.311 kb on - strand, within BACOVA_04515 at 455.343 kb on + strand, within BACOVA_04515 at 455.343 kb on + strand, within BACOVA_04515 at 455.343 kb on + strand, within BACOVA_04515 at 455.344 kb on - strand, within BACOVA_04515 at 455.344 kb on - strand, within BACOVA_04515 at 455.345 kb on + strand, within BACOVA_04515 at 455.374 kb on + strand, within BACOVA_04515 at 455.377 kb on + strand, within BACOVA_04515 at 455.378 kb on - strand, within BACOVA_04515 at 455.382 kb on + strand, within BACOVA_04515 at 455.383 kb on - strand, within BACOVA_04515 at 455.384 kb on + strand, within BACOVA_04515 at 455.385 kb on - strand, within BACOVA_04515 at 455.385 kb on - strand, within BACOVA_04515 at 455.413 kb on + strand, within BACOVA_04515 at 455.477 kb on + strand, within BACOVA_04515 at 455.487 kb on + strand, within BACOVA_04515 at 455.488 kb on - strand, within BACOVA_04515 at 455.597 kb on + strand, within BACOVA_04515 at 455.598 kb on - strand, within BACOVA_04515 at 455.599 kb on + strand, within BACOVA_04515 at 455.616 kb on - strand, within BACOVA_04515 at 455.621 kb on - strand, within BACOVA_04515 at 455.651 kb on - strand, within BACOVA_04515 at 455.663 kb on + strand, within BACOVA_04515 at 455.663 kb on + strand, within BACOVA_04515 at 455.663 kb on + strand, within BACOVA_04515 at 455.699 kb on + strand, within BACOVA_04515 at 455.764 kb on + strand at 455.792 kb on - strand at 455.893 kb on - strand at 455.893 kb on - strand at 455.897 kb on + strand at 455.942 kb on + strand at 455.963 kb on + strand at 456.123 kb on + strand, within BACOVA_04516 at 456.204 kb on + strand, within BACOVA_04516 at 456.275 kb on + strand, within BACOVA_04516 at 456.275 kb on + strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.276 kb on - strand, within BACOVA_04516 at 456.326 kb on + strand, within BACOVA_04516 at 456.327 kb on - strand, within BACOVA_04516 at 456.327 kb on - strand, within BACOVA_04516 at 456.331 kb on + strand, within BACOVA_04516 at 456.332 kb on - strand, within BACOVA_04516 at 456.332 kb on - strand, within BACOVA_04516 at 456.346 kb on + strand, within BACOVA_04516 at 456.347 kb on - strand, within BACOVA_04516 at 456.378 kb on + strand, within BACOVA_04516 at 456.379 kb on - strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.381 kb on + strand, within BACOVA_04516 at 456.382 kb on - strand, within BACOVA_04516 at 456.385 kb on + strand, within BACOVA_04516 at 456.386 kb on - strand, within BACOVA_04516 at 456.386 kb on - strand, within BACOVA_04516 at 456.409 kb on - strand, within BACOVA_04516 at 456.465 kb on - strand, within BACOVA_04516 at 456.498 kb on - strand, within BACOVA_04516 at 456.498 kb on - strand, within BACOVA_04516 at 456.508 kb on + strand, within BACOVA_04516 at 456.517 kb on + strand, within BACOVA_04516 at 456.518 kb on - strand, within BACOVA_04516 at 456.518 kb on - strand, within BACOVA_04516 at 456.548 kb on - strand, within BACOVA_04516 at 456.563 kb on - strand, within BACOVA_04516 at 456.603 kb on + strand, within BACOVA_04516 at 456.610 kb on + strand, within BACOVA_04516 at 456.610 kb on + strand, within BACOVA_04516 at 456.611 kb on - strand, within BACOVA_04516 at 456.615 kb on - strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.630 kb on + strand, within BACOVA_04516 at 456.631 kb on - strand, within BACOVA_04516 at 456.646 kb on + strand, within BACOVA_04516 at 456.647 kb on - strand, within BACOVA_04516 at 456.675 kb on + strand, within BACOVA_04516 at 456.685 kb on - strand, within BACOVA_04516 at 456.698 kb on - strand, within BACOVA_04516 at 456.754 kb on + strand, within BACOVA_04516 at 456.756 kb on + strand, within BACOVA_04516 at 456.905 kb on + strand, within BACOVA_04516 at 456.936 kb on + strand, within BACOVA_04516 at 456.998 kb on + strand, within BACOVA_04516 at 457.003 kb on + strand, within BACOVA_04516 at 457.003 kb on + strand, within BACOVA_04516 at 457.004 kb on - strand, within BACOVA_04516 at 457.009 kb on - strand, within BACOVA_04516 at 457.036 kb on + strand, within BACOVA_04516 at 457.036 kb on + strand, within BACOVA_04516 at 457.037 kb on - strand, within BACOVA_04516 at 457.037 kb on - strand, within BACOVA_04516 at 457.063 kb on - strand, within BACOVA_04516 at 457.075 kb on + strand at 457.076 kb on - strand at 457.084 kb on - strand at 457.084 kb on - strand at 457.128 kb on + strand at 457.129 kb on - strand at 457.190 kb on + strand at 457.194 kb on + strand at 457.259 kb on - strand at 457.261 kb on - strand at 457.264 kb on + strand at 457.265 kb on - strand at 457.265 kb on - strand at 457.270 kb on + strand, within BACOVA_04517 at 457.271 kb on - strand, within BACOVA_04517 at 457.327 kb on - strand, within BACOVA_04517 at 457.327 kb on - strand, within BACOVA_04517 at 457.327 kb on - strand, within BACOVA_04517 at 457.398 kb on - strand, within BACOVA_04517 at 457.426 kb on + strand, within BACOVA_04517 at 457.453 kb on + strand, within BACOVA_04517 at 457.454 kb on - strand, within BACOVA_04517 at 457.455 kb on + strand, within BACOVA_04517 at 457.492 kb on - strand, within BACOVA_04517 at 457.607 kb on + strand, within BACOVA_04517 at 457.643 kb on + strand, within BACOVA_04517 at 457.644 kb on - strand, within BACOVA_04517 at 457.728 kb on - strand, within BACOVA_04517 at 457.728 kb on - strand, within BACOVA_04517 at 457.759 kb on + strand, within BACOVA_04517 at 457.759 kb on + strand, within BACOVA_04517 at 457.759 kb on + strand, within BACOVA_04517 at 457.760 kb on - strand, within BACOVA_04517 at 457.760 kb on - strand, within BACOVA_04517 at 457.760 kb on - strand, within BACOVA_04517 at 457.760 kb on - strand, within BACOVA_04517 at 457.763 kb on - strand, within BACOVA_04517 at 457.799 kb on + strand, within BACOVA_04517 at 457.799 kb on + strand, within BACOVA_04517 at 457.799 kb on + strand, within BACOVA_04517 at 457.835 kb on + strand, within BACOVA_04517 at 457.835 kb on + strand, within BACOVA_04517 at 457.835 kb on + strand, within BACOVA_04517 at 457.864 kb on + strand at 457.864 kb on + strand at 457.865 kb on - strand at 457.865 kb on - strand at 457.867 kb on - strand at 457.867 kb on - strand at 457.904 kb on + strand at 457.905 kb on - strand at 457.905 kb on - strand at 457.905 kb on - strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.911 kb on - strand at 457.913 kb on - strand at 457.913 kb on - strand at 457.925 kb on - strand at 457.928 kb on - strand at 457.935 kb on + strand at 457.942 kb on + strand at 457.942 kb on + strand at 457.957 kb on - strand at 457.986 kb on - strand at 457.986 kb on - strand at 458.068 kb on - strand, within BACOVA_04518 at 458.068 kb on - strand, within BACOVA_04518 at 458.130 kb on + strand, within BACOVA_04518 at 458.131 kb on - strand, within BACOVA_04518 at 458.164 kb on - strand, within BACOVA_04518
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 455,090 + BACOVA_04515 0.35 +2.3 455,095 + BACOVA_04515 0.36 -0.9 455,096 - BACOVA_04515 0.36 +0.0 455,098 + BACOVA_04515 0.36 -0.2 455,099 - BACOVA_04515 0.36 +4.9 455,134 + BACOVA_04515 0.39 +1.4 455,198 + BACOVA_04515 0.44 -0.0 455,198 + BACOVA_04515 0.44 -1.2 455,199 - BACOVA_04515 0.44 +0.0 455,269 + BACOVA_04515 0.50 +3.0 455,292 + BACOVA_04515 0.52 +1.0 455,297 + BACOVA_04515 0.52 -0.2 455,297 + BACOVA_04515 0.52 -1.6 455,309 - BACOVA_04515 0.53 +0.2 455,309 - BACOVA_04515 0.53 +1.2 455,310 + BACOVA_04515 0.54 +4.2 455,311 - BACOVA_04515 0.54 -0.4 455,343 + BACOVA_04515 0.56 -1.1 455,343 + BACOVA_04515 0.56 +1.5 455,343 + BACOVA_04515 0.56 +1.9 455,344 - BACOVA_04515 0.56 -0.6 455,344 - BACOVA_04515 0.56 +1.6 455,345 + BACOVA_04515 0.56 +0.4 455,374 + BACOVA_04515 0.59 +0.7 455,377 + BACOVA_04515 0.59 +0.0 455,378 - BACOVA_04515 0.59 -1.1 455,382 + BACOVA_04515 0.60 +0.1 455,383 - BACOVA_04515 0.60 -0.5 455,384 + BACOVA_04515 0.60 -1.6 455,385 - BACOVA_04515 0.60 -1.2 455,385 - BACOVA_04515 0.60 -1.9 455,413 + BACOVA_04515 0.62 -1.3 455,477 + BACOVA_04515 0.67 +0.6 455,487 + BACOVA_04515 0.68 -1.1 455,488 - BACOVA_04515 0.68 +1.0 455,597 + BACOVA_04515 0.77 +1.0 455,598 - BACOVA_04515 0.77 +0.3 455,599 + BACOVA_04515 0.78 -0.5 455,616 - BACOVA_04515 0.79 -0.9 455,621 - BACOVA_04515 0.79 +1.0 455,651 - BACOVA_04515 0.82 -0.7 455,663 + BACOVA_04515 0.83 -0.4 455,663 + BACOVA_04515 0.83 -0.8 455,663 + BACOVA_04515 0.83 -2.7 455,699 + BACOVA_04515 0.86 -0.9 455,764 + -0.6 455,792 - +0.6 455,893 - -1.0 455,893 - +0.3 455,897 + +0.6 455,942 + +0.0 455,963 + -0.4 456,123 + BACOVA_04516 0.10 +2.6 456,204 + BACOVA_04516 0.17 +0.0 456,275 + BACOVA_04516 0.23 -0.4 456,275 + BACOVA_04516 0.23 -0.5 456,276 - BACOVA_04516 0.23 -0.7 456,276 - BACOVA_04516 0.23 +2.6 456,276 - BACOVA_04516 0.23 +0.6 456,276 - BACOVA_04516 0.23 -2.2 456,326 + BACOVA_04516 0.27 +1.6 456,327 - BACOVA_04516 0.27 +1.3 456,327 - BACOVA_04516 0.27 -1.1 456,331 + BACOVA_04516 0.28 -0.7 456,332 - BACOVA_04516 0.28 -2.7 456,332 - BACOVA_04516 0.28 -0.3 456,346 + BACOVA_04516 0.29 -0.4 456,347 - BACOVA_04516 0.29 +0.1 456,378 + BACOVA_04516 0.32 -0.5 456,379 - BACOVA_04516 0.32 -0.9 456,381 + BACOVA_04516 0.32 +1.6 456,381 + BACOVA_04516 0.32 -1.6 456,381 + BACOVA_04516 0.32 +0.3 456,381 + BACOVA_04516 0.32 -1.6 456,382 - BACOVA_04516 0.32 -0.5 456,385 + BACOVA_04516 0.32 -0.2 456,386 - BACOVA_04516 0.32 -2.2 456,386 - BACOVA_04516 0.32 -0.7 456,409 - BACOVA_04516 0.34 -0.6 456,465 - BACOVA_04516 0.39 -0.5 456,498 - BACOVA_04516 0.42 -0.7 456,498 - BACOVA_04516 0.42 -1.5 456,508 + BACOVA_04516 0.43 -0.5 456,517 + BACOVA_04516 0.43 +1.0 456,518 - BACOVA_04516 0.43 -0.2 456,518 - BACOVA_04516 0.43 -2.4 456,548 - BACOVA_04516 0.46 -0.5 456,563 - BACOVA_04516 0.47 +0.3 456,603 + BACOVA_04516 0.51 +1.6 456,610 + BACOVA_04516 0.51 +1.2 456,610 + BACOVA_04516 0.51 -0.0 456,611 - BACOVA_04516 0.51 -2.0 456,615 - BACOVA_04516 0.52 -0.0 456,630 + BACOVA_04516 0.53 +0.6 456,630 + BACOVA_04516 0.53 -0.2 456,630 + BACOVA_04516 0.53 -0.5 456,630 + BACOVA_04516 0.53 -2.4 456,631 - BACOVA_04516 0.53 -1.2 456,646 + BACOVA_04516 0.54 -0.9 456,647 - BACOVA_04516 0.54 +0.3 456,675 + BACOVA_04516 0.57 +0.8 456,685 - BACOVA_04516 0.57 +1.3 456,698 - BACOVA_04516 0.59 +2.5 456,754 + BACOVA_04516 0.63 +0.0 456,756 + BACOVA_04516 0.63 -3.0 456,905 + BACOVA_04516 0.76 -0.9 456,936 + BACOVA_04516 0.79 +0.0 456,998 + BACOVA_04516 0.84 -0.8 457,003 + BACOVA_04516 0.84 +0.4 457,003 + BACOVA_04516 0.84 -1.0 457,004 - BACOVA_04516 0.84 -0.5 457,009 - BACOVA_04516 0.85 -0.5 457,036 + BACOVA_04516 0.87 +0.6 457,036 + BACOVA_04516 0.87 +0.5 457,037 - BACOVA_04516 0.87 +1.6 457,037 - BACOVA_04516 0.87 +0.0 457,063 - BACOVA_04516 0.89 +0.0 457,075 + +0.6 457,076 - -1.9 457,084 - +0.0 457,084 - +0.6 457,128 + -1.9 457,129 - -0.2 457,190 + -0.5 457,194 + -0.4 457,259 - +1.6 457,261 - +0.1 457,264 + -1.0 457,265 - +2.2 457,265 - +0.5 457,270 + BACOVA_04517 0.11 +1.1 457,271 - BACOVA_04517 0.11 -0.5 457,327 - BACOVA_04517 0.18 -0.2 457,327 - BACOVA_04517 0.18 -0.1 457,327 - BACOVA_04517 0.18 -0.9 457,398 - BACOVA_04517 0.28 -1.3 457,426 + BACOVA_04517 0.32 +0.0 457,453 + BACOVA_04517 0.36 -0.9 457,454 - BACOVA_04517 0.36 +1.9 457,455 + BACOVA_04517 0.36 +0.8 457,492 - BACOVA_04517 0.41 -1.0 457,607 + BACOVA_04517 0.57 +0.6 457,643 + BACOVA_04517 0.62 -1.1 457,644 - BACOVA_04517 0.62 -0.5 457,728 - BACOVA_04517 0.73 -0.5 457,728 - BACOVA_04517 0.73 -0.7 457,759 + BACOVA_04517 0.78 +1.6 457,759 + BACOVA_04517 0.78 +0.5 457,759 + BACOVA_04517 0.78 -0.1 457,760 - BACOVA_04517 0.78 -0.8 457,760 - BACOVA_04517 0.78 -0.3 457,760 - BACOVA_04517 0.78 +0.3 457,760 - BACOVA_04517 0.78 +0.0 457,763 - BACOVA_04517 0.78 -0.6 457,799 + BACOVA_04517 0.83 -0.6 457,799 + BACOVA_04517 0.83 +0.3 457,799 + BACOVA_04517 0.83 +0.8 457,835 + BACOVA_04517 0.88 -0.2 457,835 + BACOVA_04517 0.88 -0.2 457,835 + BACOVA_04517 0.88 -0.2 457,864 + -1.9 457,864 + -0.4 457,865 - -1.8 457,865 - -2.2 457,867 - -0.7 457,867 - -0.5 457,904 + +2.6 457,905 - -0.8 457,905 - +1.0 457,905 - -3.1 457,910 + +1.0 457,910 + -0.1 457,911 - +0.6 457,913 - +1.0 457,913 - +0.2 457,925 - +0.1 457,928 - +0.3 457,935 + -3.0 457,942 + -0.6 457,942 + +0.7 457,957 - -0.1 457,986 - +2.6 457,986 - +1.0 458,068 - BACOVA_04518 0.12 -1.1 458,068 - BACOVA_04518 0.12 +0.2 458,130 + BACOVA_04518 0.17 +1.6 458,131 - BACOVA_04518 0.18 -0.2 458,164 - BACOVA_04518 0.20 +0.0
Or see this region's nucleotide sequence