Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04362 and BACOVA_04363 are separated by 298 nucleotides BACOVA_04363 and BACOVA_04364 are separated by 7 nucleotides BACOVA_04364 and BACOVA_04365 overlap by 4 nucleotides BACOVA_04365 and BACOVA_04366 overlap by 41 nucleotides BACOVA_04366 and BACOVA_04367 are separated by 160 nucleotides
BACOVA_04362: BACOVA_04362 - TonB-linked outer membrane protein, SusC/RagA family, at 256,146 to 259,352
_04362
BACOVA_04363: BACOVA_04363 - hypothetical protein, at 259,651 to 260,199
_04363
BACOVA_04364: BACOVA_04364 - hypothetical protein, at 260,207 to 260,827
_04364
BACOVA_04365: BACOVA_04365 - hypothetical protein, at 260,824 to 260,973
_04365
BACOVA_04366: BACOVA_04366 - hypothetical protein, at 260,933 to 261,037
_04366
BACOVA_04367: BACOVA_04367 - hypothetical protein, at 261,198 to 261,446
_04367
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 258.683 kb on + strand, within BACOVA_04362 at 258.684 kb on - strand, within BACOVA_04362 at 258.693 kb on - strand, within BACOVA_04362 at 258.790 kb on - strand, within BACOVA_04362 at 258.805 kb on + strand, within BACOVA_04362 at 258.806 kb on - strand, within BACOVA_04362 at 258.807 kb on + strand, within BACOVA_04362 at 258.807 kb on + strand, within BACOVA_04362 at 258.891 kb on + strand, within BACOVA_04362 at 258.892 kb on - strand, within BACOVA_04362 at 258.918 kb on + strand, within BACOVA_04362 at 258.919 kb on - strand, within BACOVA_04362 at 258.919 kb on - strand, within BACOVA_04362 at 258.922 kb on - strand, within BACOVA_04362 at 258.932 kb on + strand, within BACOVA_04362 at 258.980 kb on + strand, within BACOVA_04362 at 258.980 kb on + strand, within BACOVA_04362 at 259.096 kb on - strand at 259.118 kb on + strand at 259.185 kb on - strand at 259.199 kb on + strand at 259.200 kb on - strand at 259.200 kb on - strand at 259.200 kb on - strand at 259.215 kb on + strand at 259.215 kb on + strand at 259.216 kb on - strand at 259.216 kb on - strand at 259.216 kb on - strand at 259.232 kb on + strand at 259.324 kb on - strand at 259.365 kb on + strand at 259.410 kb on + strand at 259.434 kb on + strand at 259.435 kb on - strand at 259.436 kb on + strand at 259.450 kb on - strand at 259.454 kb on - strand at 259.458 kb on - strand at 259.495 kb on - strand at 259.528 kb on + strand at 259.528 kb on + strand at 259.529 kb on - strand at 259.590 kb on - strand at 259.620 kb on - strand at 259.620 kb on - strand at 259.621 kb on + strand at 259.622 kb on - strand at 259.622 kb on - strand at 259.647 kb on + strand at 259.648 kb on - strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.650 kb on - strand at 259.650 kb on - strand at 259.653 kb on - strand at 259.654 kb on + strand at 259.654 kb on + strand at 259.655 kb on - strand at 259.655 kb on - strand at 259.663 kb on + strand at 259.663 kb on + strand at 259.666 kb on - strand at 259.688 kb on + strand at 259.688 kb on + strand at 259.701 kb on + strand at 259.702 kb on - strand at 259.702 kb on - strand at 259.711 kb on + strand, within BACOVA_04363 at 259.892 kb on - strand, within BACOVA_04363 at 259.909 kb on - strand, within BACOVA_04363 at 259.909 kb on - strand, within BACOVA_04363 at 259.910 kb on + strand, within BACOVA_04363 at 259.926 kb on + strand, within BACOVA_04363 at 259.927 kb on - strand, within BACOVA_04363 at 260.037 kb on + strand, within BACOVA_04363 at 260.038 kb on - strand, within BACOVA_04363 at 260.052 kb on - strand, within BACOVA_04363 at 260.061 kb on + strand, within BACOVA_04363 at 260.066 kb on + strand, within BACOVA_04363 at 260.066 kb on + strand, within BACOVA_04363 at 260.067 kb on - strand, within BACOVA_04363 at 260.069 kb on - strand, within BACOVA_04363 at 260.069 kb on - strand, within BACOVA_04363 at 260.073 kb on + strand, within BACOVA_04363 at 260.073 kb on + strand, within BACOVA_04363 at 260.117 kb on + strand, within BACOVA_04363 at 260.216 kb on + strand at 260.220 kb on + strand at 260.220 kb on + strand at 260.221 kb on - strand at 260.221 kb on - strand at 260.227 kb on + strand at 260.231 kb on + strand at 260.260 kb on + strand at 260.267 kb on - strand at 260.273 kb on - strand, within BACOVA_04364 at 260.282 kb on + strand, within BACOVA_04364 at 260.282 kb on + strand, within BACOVA_04364 at 260.290 kb on + strand, within BACOVA_04364 at 260.290 kb on + strand, within BACOVA_04364 at 260.378 kb on + strand, within BACOVA_04364 at 260.435 kb on + strand, within BACOVA_04364 at 260.435 kb on + strand, within BACOVA_04364 at 260.451 kb on - strand, within BACOVA_04364 at 260.470 kb on + strand, within BACOVA_04364 at 260.489 kb on + strand, within BACOVA_04364 at 260.511 kb on - strand, within BACOVA_04364 at 260.515 kb on + strand, within BACOVA_04364 at 260.516 kb on - strand, within BACOVA_04364 at 260.518 kb on - strand, within BACOVA_04364 at 260.537 kb on + strand, within BACOVA_04364 at 260.542 kb on - strand, within BACOVA_04364 at 260.581 kb on + strand, within BACOVA_04364 at 260.581 kb on + strand, within BACOVA_04364 at 260.584 kb on + strand, within BACOVA_04364 at 260.595 kb on - strand, within BACOVA_04364 at 260.635 kb on + strand, within BACOVA_04364 at 260.635 kb on + strand, within BACOVA_04364 at 260.636 kb on - strand, within BACOVA_04364 at 260.706 kb on + strand, within BACOVA_04364 at 260.713 kb on + strand, within BACOVA_04364 at 260.713 kb on + strand, within BACOVA_04364 at 260.714 kb on - strand, within BACOVA_04364 at 260.717 kb on - strand, within BACOVA_04364 at 260.727 kb on - strand, within BACOVA_04364 at 260.811 kb on + strand at 260.811 kb on + strand at 260.811 kb on + strand at 260.812 kb on - strand at 260.812 kb on - strand at 260.814 kb on - strand at 260.829 kb on + strand at 260.863 kb on + strand, within BACOVA_04365 at 260.934 kb on + strand at 260.935 kb on - strand at 260.974 kb on + strand, within BACOVA_04366 at 260.975 kb on - strand, within BACOVA_04366 at 260.975 kb on - strand, within BACOVA_04366 at 261.001 kb on - strand, within BACOVA_04366 at 261.052 kb on + strand at 261.061 kb on - strand at 261.176 kb on + strand at 261.177 kb on - strand at 261.186 kb on + strand at 261.186 kb on + strand at 261.187 kb on - strand at 261.188 kb on + strand at 261.188 kb on + strand at 261.188 kb on + strand at 261.189 kb on - strand at 261.189 kb on - strand at 261.190 kb on + strand at 261.191 kb on - strand at 261.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 258,683 + BACOVA_04362 0.79 +2.1 258,684 - BACOVA_04362 0.79 -1.0 258,693 - BACOVA_04362 0.79 -1.0 258,790 - BACOVA_04362 0.82 +0.4 258,805 + BACOVA_04362 0.83 -3.0 258,806 - BACOVA_04362 0.83 -0.0 258,807 + BACOVA_04362 0.83 +0.5 258,807 + BACOVA_04362 0.83 -0.6 258,891 + BACOVA_04362 0.86 +0.5 258,892 - BACOVA_04362 0.86 +0.1 258,918 + BACOVA_04362 0.86 -0.5 258,919 - BACOVA_04362 0.86 -1.4 258,919 - BACOVA_04362 0.86 +0.2 258,922 - BACOVA_04362 0.87 -1.2 258,932 + BACOVA_04362 0.87 -0.0 258,980 + BACOVA_04362 0.88 -1.0 258,980 + BACOVA_04362 0.88 +0.6 259,096 - -0.6 259,118 + -1.3 259,185 - -0.0 259,199 + -0.5 259,200 - -0.7 259,200 - +1.2 259,200 - -1.8 259,215 + +1.2 259,215 + +0.5 259,216 - +1.1 259,216 - -0.3 259,216 - -1.1 259,232 + -1.5 259,324 - -0.3 259,365 + -0.0 259,410 + -0.6 259,434 + +2.5 259,435 - +0.7 259,436 + -1.1 259,450 - -0.6 259,454 - +2.5 259,458 - -0.6 259,495 - -0.0 259,528 + +0.1 259,528 + +0.4 259,529 - +0.5 259,590 - -0.3 259,620 - +0.2 259,620 - -0.2 259,621 + -1.6 259,622 - -0.8 259,622 - -1.0 259,647 + -1.3 259,648 - -0.1 259,649 + -1.8 259,649 + -0.8 259,649 + +1.2 259,649 + +0.7 259,650 - -0.2 259,650 - -2.6 259,653 - -1.8 259,654 + -0.8 259,654 + -0.0 259,655 - +3.0 259,655 - -0.3 259,663 + -0.4 259,663 + +0.1 259,666 - -0.3 259,688 + -0.0 259,688 + +1.3 259,701 + -0.4 259,702 - +1.0 259,702 - +0.1 259,711 + BACOVA_04363 0.11 -1.4 259,892 - BACOVA_04363 0.44 +1.0 259,909 - BACOVA_04363 0.47 +0.6 259,909 - BACOVA_04363 0.47 -1.2 259,910 + BACOVA_04363 0.47 -0.9 259,926 + BACOVA_04363 0.50 -0.7 259,927 - BACOVA_04363 0.50 +2.0 260,037 + BACOVA_04363 0.70 -0.3 260,038 - BACOVA_04363 0.70 +1.0 260,052 - BACOVA_04363 0.73 -0.0 260,061 + BACOVA_04363 0.75 -0.6 260,066 + BACOVA_04363 0.76 -0.3 260,066 + BACOVA_04363 0.76 +0.3 260,067 - BACOVA_04363 0.76 +0.5 260,069 - BACOVA_04363 0.76 +3.0 260,069 - BACOVA_04363 0.76 -1.5 260,073 + BACOVA_04363 0.77 -0.0 260,073 + BACOVA_04363 0.77 +0.2 260,117 + BACOVA_04363 0.85 -2.5 260,216 + -1.0 260,220 + +1.5 260,220 + -1.4 260,221 - -1.3 260,221 - +1.0 260,227 + +0.1 260,231 + +1.2 260,260 + +0.2 260,267 - -0.2 260,273 - BACOVA_04364 0.11 +0.8 260,282 + BACOVA_04364 0.12 -2.5 260,282 + BACOVA_04364 0.12 -0.5 260,290 + BACOVA_04364 0.13 +2.1 260,290 + BACOVA_04364 0.13 +0.2 260,378 + BACOVA_04364 0.28 -2.7 260,435 + BACOVA_04364 0.37 -0.4 260,435 + BACOVA_04364 0.37 +1.5 260,451 - BACOVA_04364 0.39 +0.7 260,470 + BACOVA_04364 0.42 -0.4 260,489 + BACOVA_04364 0.45 -0.8 260,511 - BACOVA_04364 0.49 +0.1 260,515 + BACOVA_04364 0.50 -0.6 260,516 - BACOVA_04364 0.50 -0.6 260,518 - BACOVA_04364 0.50 +0.7 260,537 + BACOVA_04364 0.53 +1.8 260,542 - BACOVA_04364 0.54 -1.4 260,581 + BACOVA_04364 0.60 +0.2 260,581 + BACOVA_04364 0.60 -0.5 260,584 + BACOVA_04364 0.61 -0.9 260,595 - BACOVA_04364 0.62 -1.8 260,635 + BACOVA_04364 0.69 -1.0 260,635 + BACOVA_04364 0.69 +0.5 260,636 - BACOVA_04364 0.69 -1.0 260,706 + BACOVA_04364 0.80 +1.1 260,713 + BACOVA_04364 0.81 +1.0 260,713 + BACOVA_04364 0.81 +1.0 260,714 - BACOVA_04364 0.82 -0.9 260,717 - BACOVA_04364 0.82 -0.9 260,727 - BACOVA_04364 0.84 +2.0 260,811 + +0.2 260,811 + -0.8 260,811 + -1.2 260,812 - -0.5 260,812 - +0.0 260,814 - +2.5 260,829 + +0.5 260,863 + BACOVA_04365 0.26 -1.9 260,934 + -0.6 260,935 - +1.0 260,974 + BACOVA_04366 0.39 -0.3 260,975 - BACOVA_04366 0.40 -0.0 260,975 - BACOVA_04366 0.40 +0.5 261,001 - BACOVA_04366 0.65 -0.0 261,052 + +4.4 261,061 - -0.2 261,176 + +1.9 261,177 - +0.7 261,186 + -0.5 261,186 + -1.6 261,187 - +1.0 261,188 + -0.6 261,188 + -0.1 261,188 + -0.6 261,189 - -0.0 261,189 - -1.7 261,190 + -1.6 261,191 - -1.8 261,197 - -0.3
Or see this region's nucleotide sequence