Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04330 and BACOVA_04331 are separated by 242 nucleotides BACOVA_04331 and BACOVA_04332 are separated by 134 nucleotides BACOVA_04332 and BACOVA_04333 are separated by 51 nucleotides BACOVA_04333 and BACOVA_04334 overlap by 4 nucleotides
BACOVA_04330: BACOVA_04330 - hypothetical protein, at 214,983 to 215,636
_04330
BACOVA_04331: BACOVA_04331 - hypothetical protein, at 215,879 to 217,540
_04331
BACOVA_04332: BACOVA_04332 - tRNA-Cys, at 217,675 to 217,746
_04332
BACOVA_04333: BACOVA_04333 - hypothetical protein, at 217,798 to 218,013
_04333
BACOVA_04334: BACOVA_04334 - ferrous iron transport protein B, at 218,010 to 220,496
_04334
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.879 kb on + strand at 214.880 kb on - strand at 214.880 kb on - strand at 214.882 kb on + strand at 214.901 kb on - strand at 214.905 kb on + strand at 214.938 kb on + strand at 214.958 kb on - strand at 214.959 kb on + strand at 214.959 kb on + strand at 214.960 kb on - strand at 214.960 kb on - strand at 214.960 kb on - strand at 214.987 kb on + strand at 214.992 kb on + strand at 215.003 kb on + strand at 215.015 kb on + strand at 215.016 kb on - strand at 215.051 kb on - strand, within BACOVA_04330 at 215.051 kb on - strand, within BACOVA_04330 at 215.051 kb on - strand, within BACOVA_04330 at 215.096 kb on + strand, within BACOVA_04330 at 215.097 kb on - strand, within BACOVA_04330 at 215.097 kb on - strand, within BACOVA_04330 at 215.106 kb on - strand, within BACOVA_04330 at 215.120 kb on + strand, within BACOVA_04330 at 215.121 kb on - strand, within BACOVA_04330 at 215.123 kb on + strand, within BACOVA_04330 at 215.124 kb on - strand, within BACOVA_04330 at 215.157 kb on - strand, within BACOVA_04330 at 215.157 kb on - strand, within BACOVA_04330 at 215.159 kb on + strand, within BACOVA_04330 at 215.180 kb on + strand, within BACOVA_04330 at 215.184 kb on - strand, within BACOVA_04330 at 215.216 kb on + strand, within BACOVA_04330 at 215.219 kb on + strand, within BACOVA_04330 at 215.256 kb on - strand, within BACOVA_04330 at 215.267 kb on + strand, within BACOVA_04330 at 215.268 kb on - strand, within BACOVA_04330 at 215.277 kb on - strand, within BACOVA_04330 at 215.279 kb on + strand, within BACOVA_04330 at 215.279 kb on + strand, within BACOVA_04330 at 215.337 kb on - strand, within BACOVA_04330 at 215.396 kb on + strand, within BACOVA_04330 at 215.405 kb on + strand, within BACOVA_04330 at 215.406 kb on - strand, within BACOVA_04330 at 215.423 kb on + strand, within BACOVA_04330 at 215.424 kb on - strand, within BACOVA_04330 at 215.424 kb on - strand, within BACOVA_04330 at 215.435 kb on + strand, within BACOVA_04330 at 215.448 kb on - strand, within BACOVA_04330 at 215.456 kb on + strand, within BACOVA_04330 at 215.457 kb on - strand, within BACOVA_04330 at 215.457 kb on - strand, within BACOVA_04330 at 215.457 kb on - strand, within BACOVA_04330 at 215.465 kb on + strand, within BACOVA_04330 at 215.483 kb on + strand, within BACOVA_04330 at 215.484 kb on - strand, within BACOVA_04330 at 215.536 kb on + strand, within BACOVA_04330 at 215.542 kb on + strand, within BACOVA_04330 at 215.577 kb on + strand at 215.583 kb on - strand at 215.584 kb on + strand at 215.656 kb on - strand at 215.689 kb on + strand at 215.703 kb on - strand at 215.757 kb on + strand at 215.758 kb on - strand at 215.760 kb on - strand at 215.765 kb on + strand at 215.768 kb on + strand at 215.768 kb on + strand at 215.769 kb on - strand at 215.769 kb on - strand at 215.769 kb on - strand at 215.770 kb on + strand at 215.771 kb on - strand at 215.777 kb on + strand at 215.778 kb on - strand at 217.670 kb on - strand at 217.889 kb on - strand, within BACOVA_04333 at 217.950 kb on - strand, within BACOVA_04333 at 218.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 214,879 + -0.9 214,880 - +0.2 214,880 - +1.5 214,882 + -1.4 214,901 - -0.1 214,905 + +0.6 214,938 + +0.5 214,958 - +0.1 214,959 + -0.6 214,959 + -1.4 214,960 - +0.7 214,960 - +2.3 214,960 - -1.5 214,987 + -1.1 214,992 + -0.5 215,003 + -0.6 215,015 + +1.5 215,016 - -0.5 215,051 - BACOVA_04330 0.10 -1.6 215,051 - BACOVA_04330 0.10 -1.3 215,051 - BACOVA_04330 0.10 -1.9 215,096 + BACOVA_04330 0.17 +0.5 215,097 - BACOVA_04330 0.17 +0.4 215,097 - BACOVA_04330 0.17 -0.3 215,106 - BACOVA_04330 0.19 -1.3 215,120 + BACOVA_04330 0.21 +2.1 215,121 - BACOVA_04330 0.21 -0.4 215,123 + BACOVA_04330 0.21 -1.3 215,124 - BACOVA_04330 0.22 +1.8 215,157 - BACOVA_04330 0.27 -0.6 215,157 - BACOVA_04330 0.27 -0.2 215,159 + BACOVA_04330 0.27 +0.1 215,180 + BACOVA_04330 0.30 +0.2 215,184 - BACOVA_04330 0.31 -0.5 215,216 + BACOVA_04330 0.36 +0.9 215,219 + BACOVA_04330 0.36 -1.6 215,256 - BACOVA_04330 0.42 -1.5 215,267 + BACOVA_04330 0.43 -0.8 215,268 - BACOVA_04330 0.44 -0.4 215,277 - BACOVA_04330 0.45 +0.3 215,279 + BACOVA_04330 0.45 -0.5 215,279 + BACOVA_04330 0.45 +2.5 215,337 - BACOVA_04330 0.54 -0.5 215,396 + BACOVA_04330 0.63 -0.8 215,405 + BACOVA_04330 0.65 -1.1 215,406 - BACOVA_04330 0.65 +0.2 215,423 + BACOVA_04330 0.67 -0.3 215,424 - BACOVA_04330 0.67 -0.2 215,424 - BACOVA_04330 0.67 -0.5 215,435 + BACOVA_04330 0.69 -1.1 215,448 - BACOVA_04330 0.71 +2.1 215,456 + BACOVA_04330 0.72 -1.2 215,457 - BACOVA_04330 0.72 -1.1 215,457 - BACOVA_04330 0.72 +0.5 215,457 - BACOVA_04330 0.72 +0.4 215,465 + BACOVA_04330 0.74 -1.8 215,483 + BACOVA_04330 0.76 -2.2 215,484 - BACOVA_04330 0.77 +0.5 215,536 + BACOVA_04330 0.85 -1.2 215,542 + BACOVA_04330 0.85 -1.1 215,577 + +1.5 215,583 - +0.4 215,584 + +0.0 215,656 - -0.5 215,689 + -0.1 215,703 - +0.4 215,757 + -0.1 215,758 - -0.4 215,760 - -1.6 215,765 + +0.5 215,768 + -0.4 215,768 + -0.3 215,769 - -1.6 215,769 - +0.2 215,769 - -0.8 215,770 + -0.5 215,771 - -1.6 215,777 + -1.0 215,778 - +2.1 217,670 - -0.2 217,889 - BACOVA_04333 0.42 +1.5 217,950 - BACOVA_04333 0.70 +0.4 218,008 - +0.9
Or see this region's nucleotide sequence