Experiment: D-Arabinose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04293 and BACOVA_04294 are separated by 10 nucleotides BACOVA_04294 and BACOVA_04295 are separated by 62 nucleotides BACOVA_04295 and BACOVA_04296 are separated by 279 nucleotides
BACOVA_04293: BACOVA_04293 - TonB-linked outer membrane protein, SusC/RagA family, at 183,409 to 186,756
_04293
BACOVA_04294: BACOVA_04294 - SusD family protein, at 186,767 to 188,104
_04294
BACOVA_04295: BACOVA_04295 - hypothetical protein, at 188,167 to 188,265
_04295
BACOVA_04296: BACOVA_04296 - hypothetical protein, at 188,545 to 189,228
_04296
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 185.792 kb on + strand, within BACOVA_04293 at 185.801 kb on - strand, within BACOVA_04293 at 185.801 kb on - strand, within BACOVA_04293 at 185.804 kb on - strand, within BACOVA_04293 at 185.806 kb on - strand, within BACOVA_04293 at 185.806 kb on - strand, within BACOVA_04293 at 185.822 kb on + strand, within BACOVA_04293 at 185.841 kb on - strand, within BACOVA_04293 at 185.862 kb on + strand, within BACOVA_04293 at 185.866 kb on - strand, within BACOVA_04293 at 185.866 kb on - strand, within BACOVA_04293 at 185.871 kb on + strand, within BACOVA_04293 at 185.884 kb on - strand, within BACOVA_04293 at 185.884 kb on - strand, within BACOVA_04293 at 185.895 kb on + strand, within BACOVA_04293 at 185.895 kb on + strand, within BACOVA_04293 at 185.896 kb on - strand, within BACOVA_04293 at 185.896 kb on - strand, within BACOVA_04293 at 185.928 kb on + strand, within BACOVA_04293 at 185.929 kb on - strand, within BACOVA_04293 at 185.959 kb on - strand, within BACOVA_04293 at 185.974 kb on + strand, within BACOVA_04293 at 185.975 kb on - strand, within BACOVA_04293 at 185.976 kb on + strand, within BACOVA_04293 at 185.999 kb on + strand, within BACOVA_04293 at 186.003 kb on + strand, within BACOVA_04293 at 186.028 kb on - strand, within BACOVA_04293 at 186.048 kb on - strand, within BACOVA_04293 at 186.065 kb on + strand, within BACOVA_04293 at 186.090 kb on + strand, within BACOVA_04293 at 186.103 kb on + strand, within BACOVA_04293 at 186.103 kb on + strand, within BACOVA_04293 at 186.223 kb on + strand, within BACOVA_04293 at 186.223 kb on + strand, within BACOVA_04293 at 186.224 kb on - strand, within BACOVA_04293 at 186.224 kb on - strand, within BACOVA_04293 at 186.230 kb on - strand, within BACOVA_04293 at 186.230 kb on - strand, within BACOVA_04293 at 186.276 kb on + strand, within BACOVA_04293 at 186.335 kb on + strand, within BACOVA_04293 at 186.354 kb on + strand, within BACOVA_04293 at 186.354 kb on + strand, within BACOVA_04293 at 186.355 kb on - strand, within BACOVA_04293 at 186.369 kb on - strand, within BACOVA_04293 at 186.385 kb on - strand, within BACOVA_04293 at 186.399 kb on - strand, within BACOVA_04293 at 186.454 kb on + strand at 186.476 kb on - strand at 186.505 kb on + strand at 186.505 kb on + strand at 186.528 kb on - strand at 186.551 kb on + strand at 186.552 kb on - strand at 186.701 kb on + strand at 186.701 kb on + strand at 186.702 kb on - strand at 186.704 kb on - strand at 186.786 kb on - strand at 186.787 kb on + strand at 186.787 kb on + strand at 186.788 kb on - strand at 186.788 kb on - strand at 186.788 kb on - strand at 186.799 kb on - strand at 186.801 kb on + strand at 186.802 kb on - strand at 186.813 kb on + strand at 186.813 kb on + strand at 186.813 kb on + strand at 186.814 kb on - strand at 186.817 kb on - strand at 186.830 kb on - strand at 186.830 kb on - strand at 186.834 kb on - strand at 186.843 kb on + strand at 186.894 kb on + strand at 186.914 kb on - strand, within BACOVA_04294 at 186.951 kb on - strand, within BACOVA_04294 at 186.966 kb on + strand, within BACOVA_04294 at 186.969 kb on + strand, within BACOVA_04294 at 186.969 kb on + strand, within BACOVA_04294 at 186.970 kb on - strand, within BACOVA_04294 at 187.072 kb on + strand, within BACOVA_04294 at 187.083 kb on - strand, within BACOVA_04294 at 187.106 kb on - strand, within BACOVA_04294 at 187.141 kb on + strand, within BACOVA_04294 at 187.142 kb on - strand, within BACOVA_04294 at 187.144 kb on + strand, within BACOVA_04294 at 187.153 kb on - strand, within BACOVA_04294 at 187.166 kb on + strand, within BACOVA_04294 at 187.167 kb on - strand, within BACOVA_04294 at 187.181 kb on + strand, within BACOVA_04294 at 187.183 kb on + strand, within BACOVA_04294 at 187.184 kb on - strand, within BACOVA_04294 at 187.184 kb on - strand, within BACOVA_04294 at 187.220 kb on + strand, within BACOVA_04294 at 187.220 kb on + strand, within BACOVA_04294 at 187.221 kb on - strand, within BACOVA_04294 at 187.222 kb on + strand, within BACOVA_04294 at 187.223 kb on - strand, within BACOVA_04294 at 187.223 kb on - strand, within BACOVA_04294 at 187.288 kb on - strand, within BACOVA_04294 at 187.288 kb on - strand, within BACOVA_04294 at 187.315 kb on - strand, within BACOVA_04294 at 187.316 kb on + strand, within BACOVA_04294 at 187.316 kb on + strand, within BACOVA_04294 at 187.317 kb on - strand, within BACOVA_04294 at 187.318 kb on + strand, within BACOVA_04294 at 187.319 kb on - strand, within BACOVA_04294 at 187.338 kb on + strand, within BACOVA_04294 at 187.338 kb on + strand, within BACOVA_04294 at 187.339 kb on - strand, within BACOVA_04294 at 187.339 kb on - strand, within BACOVA_04294 at 187.364 kb on - strand, within BACOVA_04294 at 187.364 kb on - strand, within BACOVA_04294 at 187.386 kb on - strand, within BACOVA_04294 at 187.407 kb on + strand, within BACOVA_04294 at 187.408 kb on - strand, within BACOVA_04294 at 187.413 kb on + strand, within BACOVA_04294 at 187.437 kb on - strand, within BACOVA_04294 at 187.441 kb on - strand, within BACOVA_04294 at 187.441 kb on - strand, within BACOVA_04294 at 187.441 kb on - strand, within BACOVA_04294 at 187.466 kb on + strand, within BACOVA_04294 at 187.483 kb on + strand, within BACOVA_04294 at 187.484 kb on - strand, within BACOVA_04294 at 187.485 kb on + strand, within BACOVA_04294 at 187.485 kb on + strand, within BACOVA_04294 at 187.486 kb on - strand, within BACOVA_04294 at 187.486 kb on - strand, within BACOVA_04294 at 187.486 kb on - strand, within BACOVA_04294 at 187.488 kb on + strand, within BACOVA_04294 at 187.509 kb on + strand, within BACOVA_04294 at 187.540 kb on + strand, within BACOVA_04294 at 187.550 kb on - strand, within BACOVA_04294 at 187.598 kb on + strand, within BACOVA_04294 at 187.614 kb on + strand, within BACOVA_04294 at 187.640 kb on + strand, within BACOVA_04294 at 187.677 kb on - strand, within BACOVA_04294 at 187.677 kb on - strand, within BACOVA_04294 at 187.677 kb on - strand, within BACOVA_04294 at 187.702 kb on + strand, within BACOVA_04294 at 187.739 kb on - strand, within BACOVA_04294 at 187.801 kb on - strand, within BACOVA_04294 at 187.847 kb on - strand, within BACOVA_04294 at 187.847 kb on - strand, within BACOVA_04294 at 187.882 kb on - strand, within BACOVA_04294 at 187.906 kb on - strand, within BACOVA_04294 at 188.016 kb on + strand at 188.017 kb on - strand at 188.031 kb on + strand at 188.032 kb on - strand at 188.083 kb on + strand at 188.105 kb on + strand at 188.145 kb on + strand at 188.145 kb on + strand at 188.145 kb on + strand at 188.146 kb on - strand at 188.197 kb on - strand, within BACOVA_04295 at 188.197 kb on - strand, within BACOVA_04295 at 188.201 kb on - strand, within BACOVA_04295 at 188.273 kb on + strand at 188.303 kb on + strand at 188.303 kb on + strand at 188.303 kb on + strand at 188.316 kb on - strand at 188.321 kb on - strand at 188.321 kb on - strand at 188.331 kb on - strand at 188.338 kb on + strand at 188.408 kb on + strand at 188.409 kb on - strand at 188.410 kb on + strand at 188.410 kb on + strand at 188.411 kb on - strand at 188.500 kb on + strand at 188.501 kb on - strand at 188.502 kb on + strand at 188.502 kb on + strand at 188.502 kb on + strand at 188.503 kb on - strand at 188.503 kb on - strand at 188.504 kb on + strand at 188.504 kb on + strand at 188.504 kb on + strand at 188.505 kb on - strand at 188.505 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.507 kb on - strand at 188.543 kb on + strand at 188.543 kb on + strand at 188.556 kb on + strand at 188.556 kb on + strand at 188.559 kb on + strand at 188.560 kb on - strand at 188.560 kb on - strand at 188.582 kb on + strand at 188.595 kb on - strand at 188.598 kb on + strand at 188.601 kb on + strand at 188.677 kb on + strand, within BACOVA_04296 at 188.677 kb on + strand, within BACOVA_04296 at 188.683 kb on - strand, within BACOVA_04296 at 188.685 kb on + strand, within BACOVA_04296 at 188.686 kb on - strand, within BACOVA_04296 at 188.686 kb on - strand, within BACOVA_04296 at 188.716 kb on + strand, within BACOVA_04296 at 188.747 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.756 kb on + strand, within BACOVA_04296 at 188.815 kb on - strand, within BACOVA_04296 at 188.858 kb on + strand, within BACOVA_04296 at 188.858 kb on + strand, within BACOVA_04296 at 188.859 kb on - strand, within BACOVA_04296 at 188.902 kb on + strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.921 kb on - strand, within BACOVA_04296 at 188.951 kb on + strand, within BACOVA_04296 at 188.979 kb on - strand, within BACOVA_04296 at 188.991 kb on + strand, within BACOVA_04296 at 188.992 kb on - strand, within BACOVA_04296 at 188.992 kb on - strand, within BACOVA_04296 at 189.098 kb on + strand, within BACOVA_04296
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C) remove 185,792 + BACOVA_04293 0.71 -0.2 185,801 - BACOVA_04293 0.71 -2.1 185,801 - BACOVA_04293 0.71 -0.8 185,804 - BACOVA_04293 0.72 -0.4 185,806 - BACOVA_04293 0.72 -0.3 185,806 - BACOVA_04293 0.72 +2.5 185,822 + BACOVA_04293 0.72 -0.4 185,841 - BACOVA_04293 0.73 -1.1 185,862 + BACOVA_04293 0.73 +1.5 185,866 - BACOVA_04293 0.73 -0.3 185,866 - BACOVA_04293 0.73 +0.2 185,871 + BACOVA_04293 0.74 +0.5 185,884 - BACOVA_04293 0.74 -0.5 185,884 - BACOVA_04293 0.74 +1.9 185,895 + BACOVA_04293 0.74 -0.8 185,895 + BACOVA_04293 0.74 +0.5 185,896 - BACOVA_04293 0.74 -2.0 185,896 - BACOVA_04293 0.74 -0.6 185,928 + BACOVA_04293 0.75 +0.3 185,929 - BACOVA_04293 0.75 -0.6 185,959 - BACOVA_04293 0.76 -0.1 185,974 + BACOVA_04293 0.77 +0.5 185,975 - BACOVA_04293 0.77 -0.2 185,976 + BACOVA_04293 0.77 -0.3 185,999 + BACOVA_04293 0.77 +1.5 186,003 + BACOVA_04293 0.77 -1.1 186,028 - BACOVA_04293 0.78 +1.1 186,048 - BACOVA_04293 0.79 +0.3 186,065 + BACOVA_04293 0.79 -0.8 186,090 + BACOVA_04293 0.80 -1.6 186,103 + BACOVA_04293 0.80 +0.2 186,103 + BACOVA_04293 0.80 -0.3 186,223 + BACOVA_04293 0.84 +0.9 186,223 + BACOVA_04293 0.84 -0.6 186,224 - BACOVA_04293 0.84 +1.2 186,224 - BACOVA_04293 0.84 -1.3 186,230 - BACOVA_04293 0.84 -0.9 186,230 - BACOVA_04293 0.84 -0.4 186,276 + BACOVA_04293 0.86 -0.4 186,335 + BACOVA_04293 0.87 -0.5 186,354 + BACOVA_04293 0.88 -0.5 186,354 + BACOVA_04293 0.88 +0.7 186,355 - BACOVA_04293 0.88 -0.2 186,369 - BACOVA_04293 0.88 -0.5 186,385 - BACOVA_04293 0.89 +0.2 186,399 - BACOVA_04293 0.89 +0.5 186,454 + -0.1 186,476 - -1.1 186,505 + +0.2 186,505 + +1.5 186,528 - -2.5 186,551 + -2.1 186,552 - -1.3 186,701 + -0.1 186,701 + +2.5 186,702 - +0.9 186,704 - +0.9 186,786 - -1.8 186,787 + +0.2 186,787 + +1.2 186,788 - +1.9 186,788 - +0.2 186,788 - +0.5 186,799 - +0.3 186,801 + +3.0 186,802 - -0.8 186,813 + -0.8 186,813 + -1.6 186,813 + +0.9 186,814 - +0.2 186,817 - -0.9 186,830 - +0.7 186,830 - -0.6 186,834 - +0.3 186,843 + -1.4 186,894 + +0.5 186,914 - BACOVA_04294 0.11 -1.1 186,951 - BACOVA_04294 0.14 -0.6 186,966 + BACOVA_04294 0.15 -1.0 186,969 + BACOVA_04294 0.15 -1.6 186,969 + BACOVA_04294 0.15 +0.5 186,970 - BACOVA_04294 0.15 +0.0 187,072 + BACOVA_04294 0.23 -1.4 187,083 - BACOVA_04294 0.24 +2.5 187,106 - BACOVA_04294 0.25 -0.5 187,141 + BACOVA_04294 0.28 -0.7 187,142 - BACOVA_04294 0.28 +1.5 187,144 + BACOVA_04294 0.28 +0.2 187,153 - BACOVA_04294 0.29 +1.5 187,166 + BACOVA_04294 0.30 +0.9 187,167 - BACOVA_04294 0.30 +2.4 187,181 + BACOVA_04294 0.31 -0.9 187,183 + BACOVA_04294 0.31 -1.3 187,184 - BACOVA_04294 0.31 +1.5 187,184 - BACOVA_04294 0.31 +0.9 187,220 + BACOVA_04294 0.34 +2.5 187,220 + BACOVA_04294 0.34 +0.2 187,221 - BACOVA_04294 0.34 -1.2 187,222 + BACOVA_04294 0.34 +0.5 187,223 - BACOVA_04294 0.34 +0.7 187,223 - BACOVA_04294 0.34 +1.5 187,288 - BACOVA_04294 0.39 +0.2 187,288 - BACOVA_04294 0.39 -1.3 187,315 - BACOVA_04294 0.41 +0.6 187,316 + BACOVA_04294 0.41 -1.6 187,316 + BACOVA_04294 0.41 +1.5 187,317 - BACOVA_04294 0.41 -1.3 187,318 + BACOVA_04294 0.41 +1.4 187,319 - BACOVA_04294 0.41 -1.7 187,338 + BACOVA_04294 0.43 -0.8 187,338 + BACOVA_04294 0.43 -0.5 187,339 - BACOVA_04294 0.43 -0.2 187,339 - BACOVA_04294 0.43 +0.5 187,364 - BACOVA_04294 0.45 -2.0 187,364 - BACOVA_04294 0.45 -0.5 187,386 - BACOVA_04294 0.46 +0.2 187,407 + BACOVA_04294 0.48 +0.7 187,408 - BACOVA_04294 0.48 -0.6 187,413 + BACOVA_04294 0.48 -0.5 187,437 - BACOVA_04294 0.50 -2.1 187,441 - BACOVA_04294 0.50 -0.4 187,441 - BACOVA_04294 0.50 +1.5 187,441 - BACOVA_04294 0.50 -0.5 187,466 + BACOVA_04294 0.52 -0.6 187,483 + BACOVA_04294 0.54 -0.6 187,484 - BACOVA_04294 0.54 -0.8 187,485 + BACOVA_04294 0.54 +1.5 187,485 + BACOVA_04294 0.54 -0.9 187,486 - BACOVA_04294 0.54 -0.7 187,486 - BACOVA_04294 0.54 +0.5 187,486 - BACOVA_04294 0.54 -0.7 187,488 + BACOVA_04294 0.54 +0.4 187,509 + BACOVA_04294 0.55 +0.7 187,540 + BACOVA_04294 0.58 +0.2 187,550 - BACOVA_04294 0.59 -0.6 187,598 + BACOVA_04294 0.62 +0.5 187,614 + BACOVA_04294 0.63 -1.3 187,640 + BACOVA_04294 0.65 +0.2 187,677 - BACOVA_04294 0.68 -0.5 187,677 - BACOVA_04294 0.68 +1.2 187,677 - BACOVA_04294 0.68 +0.9 187,702 + BACOVA_04294 0.70 -1.0 187,739 - BACOVA_04294 0.73 -1.7 187,801 - BACOVA_04294 0.77 -0.3 187,847 - BACOVA_04294 0.81 -1.1 187,847 - BACOVA_04294 0.81 -1.1 187,882 - BACOVA_04294 0.83 +0.2 187,906 - BACOVA_04294 0.85 -1.2 188,016 + -2.1 188,017 - +1.5 188,031 + -1.7 188,032 - -0.1 188,083 + +0.3 188,105 + +0.1 188,145 + -1.6 188,145 + +1.2 188,145 + -1.0 188,146 - -0.8 188,197 - BACOVA_04295 0.30 -1.6 188,197 - BACOVA_04295 0.30 -1.2 188,201 - BACOVA_04295 0.34 +0.6 188,273 + +2.9 188,303 + +0.5 188,303 + -1.0 188,303 + -1.5 188,316 - -0.1 188,321 - +0.5 188,321 - -0.5 188,331 - -0.6 188,338 + +0.5 188,408 + -1.3 188,409 - -2.5 188,410 + -0.8 188,410 + +2.5 188,411 - +2.5 188,500 + -0.1 188,501 - -0.1 188,502 + -1.1 188,502 + +0.7 188,502 + +1.9 188,503 - -0.4 188,503 - +5.7 188,504 + +0.1 188,504 + -0.2 188,504 + -0.6 188,505 - -0.3 188,505 - -0.5 188,507 - -0.5 188,507 - +0.5 188,507 - -0.4 188,507 - -0.1 188,543 + -0.9 188,543 + -2.2 188,556 + +1.1 188,556 + -0.3 188,559 + -0.6 188,560 - +0.1 188,560 - -1.2 188,582 + +2.8 188,595 - -1.1 188,598 + -0.4 188,601 + -0.1 188,677 + BACOVA_04296 0.19 -0.5 188,677 + BACOVA_04296 0.19 -0.1 188,683 - BACOVA_04296 0.20 -0.1 188,685 + BACOVA_04296 0.20 -0.1 188,686 - BACOVA_04296 0.21 -0.5 188,686 - BACOVA_04296 0.21 -0.3 188,716 + BACOVA_04296 0.25 +0.1 188,747 + BACOVA_04296 0.30 +0.6 188,756 + BACOVA_04296 0.31 +1.9 188,756 + BACOVA_04296 0.31 +0.2 188,756 + BACOVA_04296 0.31 -1.5 188,815 - BACOVA_04296 0.39 +1.1 188,858 + BACOVA_04296 0.46 -0.6 188,858 + BACOVA_04296 0.46 -0.1 188,859 - BACOVA_04296 0.46 -0.4 188,902 + BACOVA_04296 0.52 +1.9 188,921 - BACOVA_04296 0.55 -0.6 188,921 - BACOVA_04296 0.55 -0.9 188,921 - BACOVA_04296 0.55 +0.4 188,951 + BACOVA_04296 0.59 -1.3 188,979 - BACOVA_04296 0.63 +0.9 188,991 + BACOVA_04296 0.65 -0.8 188,992 - BACOVA_04296 0.65 +0.3 188,992 - BACOVA_04296 0.65 +1.2 189,098 + BACOVA_04296 0.81 +0.1
Or see this region's nucleotide sequence