Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04013

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04012 and BACOVA_04013 are separated by 5 nucleotidesBACOVA_04013 and BACOVA_04014 overlap by 4 nucleotides BACOVA_04012: BACOVA_04012 - glycosyltransferase, group 2 family protein, at 343,437 to 344,630 _04012 BACOVA_04013: BACOVA_04013 - glycosyltransferase, group 2 family protein, at 344,636 to 345,562 _04013 BACOVA_04014: BACOVA_04014 - hypothetical protein, at 345,559 to 346,887 _04014 Position (kb) 344 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 343.641 kb on + strand, within BACOVA_04012at 343.677 kb on + strand, within BACOVA_04012at 343.678 kb on - strand, within BACOVA_04012at 343.678 kb on - strand, within BACOVA_04012at 343.680 kb on - strand, within BACOVA_04012at 343.761 kb on + strand, within BACOVA_04012at 343.803 kb on - strand, within BACOVA_04012at 343.882 kb on + strand, within BACOVA_04012at 343.924 kb on + strand, within BACOVA_04012at 343.925 kb on - strand, within BACOVA_04012at 343.925 kb on - strand, within BACOVA_04012at 343.933 kb on + strand, within BACOVA_04012at 343.933 kb on + strand, within BACOVA_04012at 343.934 kb on - strand, within BACOVA_04012at 343.934 kb on - strand, within BACOVA_04012at 344.207 kb on + strand, within BACOVA_04012at 344.273 kb on + strand, within BACOVA_04012at 344.326 kb on + strand, within BACOVA_04012at 344.566 kb on + strandat 344.566 kb on + strandat 344.567 kb on - strandat 344.574 kb on + strandat 344.575 kb on - strandat 344.579 kb on - strandat 344.579 kb on - strandat 344.579 kb on - strandat 344.579 kb on - strandat 344.583 kb on + strandat 344.583 kb on + strandat 344.592 kb on + strandat 344.630 kb on + strandat 344.630 kb on + strandat 344.631 kb on - strandat 344.633 kb on + strandat 344.666 kb on - strandat 344.706 kb on + strandat 344.706 kb on + strandat 344.707 kb on - strandat 344.790 kb on - strand, within BACOVA_04013at 344.833 kb on - strand, within BACOVA_04013at 344.867 kb on + strand, within BACOVA_04013at 344.876 kb on + strand, within BACOVA_04013at 344.928 kb on + strand, within BACOVA_04013at 344.933 kb on + strand, within BACOVA_04013at 345.041 kb on - strand, within BACOVA_04013at 345.064 kb on - strand, within BACOVA_04013at 345.137 kb on + strand, within BACOVA_04013at 345.138 kb on - strand, within BACOVA_04013at 345.154 kb on + strand, within BACOVA_04013at 345.171 kb on - strand, within BACOVA_04013at 345.276 kb on + strand, within BACOVA_04013at 345.277 kb on - strand, within BACOVA_04013at 345.277 kb on - strand, within BACOVA_04013at 345.280 kb on + strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.303 kb on + strand, within BACOVA_04013at 345.304 kb on - strand, within BACOVA_04013at 345.304 kb on - strand, within BACOVA_04013at 345.373 kb on + strand, within BACOVA_04013at 345.438 kb on - strand, within BACOVA_04013at 345.519 kb on + strandat 345.529 kb on + strandat 345.533 kb on - strandat 345.540 kb on - strandat 345.540 kb on - strandat 345.586 kb on - strandat 345.645 kb on + strandat 345.680 kb on + strandat 345.680 kb on + strandat 345.680 kb on + strandat 345.681 kb on - strandat 345.681 kb on - strandat 345.681 kb on - strandat 345.681 kb on - strandat 345.793 kb on + strand, within BACOVA_04014at 345.798 kb on + strand, within BACOVA_04014at 345.857 kb on - strand, within BACOVA_04014at 345.857 kb on - strand, within BACOVA_04014at 346.079 kb on + strand, within BACOVA_04014at 346.080 kb on - strand, within BACOVA_04014at 346.135 kb on + strand, within BACOVA_04014at 346.136 kb on - strand, within BACOVA_04014at 346.141 kb on + strand, within BACOVA_04014at 346.141 kb on + strand, within BACOVA_04014at 346.142 kb on - strand, within BACOVA_04014at 346.144 kb on - strand, within BACOVA_04014at 346.189 kb on + strand, within BACOVA_04014at 346.190 kb on - strand, within BACOVA_04014at 346.277 kb on + strand, within BACOVA_04014at 346.277 kb on + strand, within BACOVA_04014at 346.278 kb on - strand, within BACOVA_04014at 346.407 kb on + strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.408 kb on - strand, within BACOVA_04014at 346.526 kb on - strand, within BACOVA_04014

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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343,641 + BACOVA_04012 0.17 +1.3
343,677 + BACOVA_04012 0.20 +1.7
343,678 - BACOVA_04012 0.20 -0.6
343,678 - BACOVA_04012 0.20 -0.5
343,680 - BACOVA_04012 0.20 +1.6
343,761 + BACOVA_04012 0.27 +0.7
343,803 - BACOVA_04012 0.31 -1.3
343,882 + BACOVA_04012 0.37 -0.4
343,924 + BACOVA_04012 0.41 +3.3
343,925 - BACOVA_04012 0.41 -0.7
343,925 - BACOVA_04012 0.41 +0.7
343,933 + BACOVA_04012 0.42 -0.3
343,933 + BACOVA_04012 0.42 +0.2
343,934 - BACOVA_04012 0.42 -0.8
343,934 - BACOVA_04012 0.42 -0.5
344,207 + BACOVA_04012 0.64 -0.3
344,273 + BACOVA_04012 0.70 +0.7
344,326 + BACOVA_04012 0.74 -2.3
344,566 + +0.0
344,566 + +1.6
344,567 - -1.8
344,574 + +1.1
344,575 - +0.3
344,579 - -0.7
344,579 - +0.0
344,579 - -0.8
344,579 - +0.7
344,583 + -0.8
344,583 + +1.3
344,592 + +1.0
344,630 + -0.5
344,630 + +0.1
344,631 - -1.8
344,633 + +0.0
344,666 - -0.8
344,706 + +0.3
344,706 + -0.8
344,707 - +1.3
344,790 - BACOVA_04013 0.17 -3.0
344,833 - BACOVA_04013 0.21 -1.2
344,867 + BACOVA_04013 0.25 -0.5
344,876 + BACOVA_04013 0.26 +0.2
344,928 + BACOVA_04013 0.31 -1.3
344,933 + BACOVA_04013 0.32 +0.9
345,041 - BACOVA_04013 0.44 -0.5
345,064 - BACOVA_04013 0.46 -1.1
345,137 + BACOVA_04013 0.54 -0.8
345,138 - BACOVA_04013 0.54 -0.4
345,154 + BACOVA_04013 0.56 -0.7
345,171 - BACOVA_04013 0.58 +0.3
345,276 + BACOVA_04013 0.69 -1.1
345,277 - BACOVA_04013 0.69 +0.3
345,277 - BACOVA_04013 0.69 -1.0
345,280 + BACOVA_04013 0.69 +0.0
345,281 - BACOVA_04013 0.70 +1.1
345,281 - BACOVA_04013 0.70 +0.7
345,281 - BACOVA_04013 0.70 -0.4
345,281 - BACOVA_04013 0.70 +0.3
345,303 + BACOVA_04013 0.72 +0.3
345,304 - BACOVA_04013 0.72 -0.3
345,304 - BACOVA_04013 0.72 +0.7
345,373 + BACOVA_04013 0.80 -2.1
345,438 - BACOVA_04013 0.87 +0.7
345,519 + +0.2
345,529 + -0.8
345,533 - -0.3
345,540 - +1.1
345,540 - -0.9
345,586 - +2.3
345,645 + +0.1
345,680 + -1.4
345,680 + +1.3
345,680 + +0.4
345,681 - +0.7
345,681 - -1.8
345,681 - -0.3
345,681 - -0.4
345,793 + BACOVA_04014 0.18 -0.7
345,798 + BACOVA_04014 0.18 +0.9
345,857 - BACOVA_04014 0.22 -1.4
345,857 - BACOVA_04014 0.22 +0.3
346,079 + BACOVA_04014 0.39 +0.5
346,080 - BACOVA_04014 0.39 -1.1
346,135 + BACOVA_04014 0.43 +0.5
346,136 - BACOVA_04014 0.43 -0.5
346,141 + BACOVA_04014 0.44 +1.3
346,141 + BACOVA_04014 0.44 +1.1
346,142 - BACOVA_04014 0.44 -0.4
346,144 - BACOVA_04014 0.44 -0.2
346,189 + BACOVA_04014 0.47 -1.3
346,190 - BACOVA_04014 0.47 +0.2
346,277 + BACOVA_04014 0.54 -1.1
346,277 + BACOVA_04014 0.54 +0.3
346,278 - BACOVA_04014 0.54 +1.1
346,407 + BACOVA_04014 0.64 +0.3
346,408 - BACOVA_04014 0.64 +2.3
346,408 - BACOVA_04014 0.64 -0.5
346,408 - BACOVA_04014 0.64 +0.7
346,526 - BACOVA_04014 0.73 +2.3

Or see this region's nucleotide sequence