Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04012

Experiment: D-Arabinose 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04011 and BACOVA_04012 are separated by 26 nucleotidesBACOVA_04012 and BACOVA_04013 are separated by 5 nucleotidesBACOVA_04013 and BACOVA_04014 overlap by 4 nucleotides BACOVA_04011: BACOVA_04011 - glycosyltransferase, group 1 family protein, at 342,292 to 343,410 _04011 BACOVA_04012: BACOVA_04012 - glycosyltransferase, group 2 family protein, at 343,437 to 344,630 _04012 BACOVA_04013: BACOVA_04013 - glycosyltransferase, group 2 family protein, at 344,636 to 345,562 _04013 BACOVA_04014: BACOVA_04014 - hypothetical protein, at 345,559 to 346,887 _04014 Position (kb) 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 342.463 kb on + strand, within BACOVA_04011at 342.464 kb on - strand, within BACOVA_04011at 342.651 kb on - strand, within BACOVA_04011at 342.651 kb on - strand, within BACOVA_04011at 342.762 kb on + strand, within BACOVA_04011at 342.824 kb on + strand, within BACOVA_04011at 342.825 kb on - strand, within BACOVA_04011at 342.840 kb on + strand, within BACOVA_04011at 342.840 kb on + strand, within BACOVA_04011at 342.841 kb on - strand, within BACOVA_04011at 342.889 kb on - strand, within BACOVA_04011at 342.979 kb on - strand, within BACOVA_04011at 343.079 kb on - strand, within BACOVA_04011at 343.083 kb on - strand, within BACOVA_04011at 343.087 kb on - strand, within BACOVA_04011at 343.102 kb on + strand, within BACOVA_04011at 343.103 kb on - strand, within BACOVA_04011at 343.106 kb on - strand, within BACOVA_04011at 343.106 kb on - strand, within BACOVA_04011at 343.109 kb on - strand, within BACOVA_04011at 343.137 kb on + strand, within BACOVA_04011at 343.138 kb on - strand, within BACOVA_04011at 343.177 kb on + strand, within BACOVA_04011at 343.215 kb on - strand, within BACOVA_04011at 343.215 kb on - strand, within BACOVA_04011at 343.240 kb on - strand, within BACOVA_04011at 343.240 kb on - strand, within BACOVA_04011at 343.372 kb on - strandat 343.425 kb on + strandat 343.426 kb on - strandat 343.438 kb on + strandat 343.438 kb on + strandat 343.463 kb on + strandat 343.464 kb on - strandat 343.478 kb on + strandat 343.517 kb on + strandat 343.518 kb on - strandat 343.530 kb on - strandat 343.606 kb on - strand, within BACOVA_04012at 343.641 kb on + strand, within BACOVA_04012at 343.677 kb on + strand, within BACOVA_04012at 343.678 kb on - strand, within BACOVA_04012at 343.678 kb on - strand, within BACOVA_04012at 343.680 kb on - strand, within BACOVA_04012at 343.761 kb on + strand, within BACOVA_04012at 343.803 kb on - strand, within BACOVA_04012at 343.882 kb on + strand, within BACOVA_04012at 343.924 kb on + strand, within BACOVA_04012at 343.925 kb on - strand, within BACOVA_04012at 343.925 kb on - strand, within BACOVA_04012at 343.933 kb on + strand, within BACOVA_04012at 343.933 kb on + strand, within BACOVA_04012at 343.934 kb on - strand, within BACOVA_04012at 343.934 kb on - strand, within BACOVA_04012at 344.207 kb on + strand, within BACOVA_04012at 344.273 kb on + strand, within BACOVA_04012at 344.326 kb on + strand, within BACOVA_04012at 344.566 kb on + strandat 344.566 kb on + strandat 344.567 kb on - strandat 344.574 kb on + strandat 344.575 kb on - strandat 344.579 kb on - strandat 344.579 kb on - strandat 344.579 kb on - strandat 344.579 kb on - strandat 344.583 kb on + strandat 344.583 kb on + strandat 344.592 kb on + strandat 344.630 kb on + strandat 344.630 kb on + strandat 344.631 kb on - strandat 344.633 kb on + strandat 344.666 kb on - strandat 344.706 kb on + strandat 344.706 kb on + strandat 344.707 kb on - strandat 344.790 kb on - strand, within BACOVA_04013at 344.833 kb on - strand, within BACOVA_04013at 344.867 kb on + strand, within BACOVA_04013at 344.876 kb on + strand, within BACOVA_04013at 344.928 kb on + strand, within BACOVA_04013at 344.933 kb on + strand, within BACOVA_04013at 345.041 kb on - strand, within BACOVA_04013at 345.064 kb on - strand, within BACOVA_04013at 345.137 kb on + strand, within BACOVA_04013at 345.138 kb on - strand, within BACOVA_04013at 345.154 kb on + strand, within BACOVA_04013at 345.171 kb on - strand, within BACOVA_04013at 345.276 kb on + strand, within BACOVA_04013at 345.277 kb on - strand, within BACOVA_04013at 345.277 kb on - strand, within BACOVA_04013at 345.280 kb on + strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.281 kb on - strand, within BACOVA_04013at 345.303 kb on + strand, within BACOVA_04013at 345.304 kb on - strand, within BACOVA_04013at 345.304 kb on - strand, within BACOVA_04013at 345.373 kb on + strand, within BACOVA_04013at 345.438 kb on - strand, within BACOVA_04013at 345.519 kb on + strandat 345.529 kb on + strandat 345.533 kb on - strandat 345.540 kb on - strandat 345.540 kb on - strandat 345.586 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
remove
342,463 + BACOVA_04011 0.15 -1.3
342,464 - BACOVA_04011 0.15 +0.7
342,651 - BACOVA_04011 0.32 -1.7
342,651 - BACOVA_04011 0.32 +1.0
342,762 + BACOVA_04011 0.42 +0.4
342,824 + BACOVA_04011 0.48 -1.1
342,825 - BACOVA_04011 0.48 +1.0
342,840 + BACOVA_04011 0.49 -0.8
342,840 + BACOVA_04011 0.49 +2.3
342,841 - BACOVA_04011 0.49 -1.0
342,889 - BACOVA_04011 0.53 -0.6
342,979 - BACOVA_04011 0.61 -0.7
343,079 - BACOVA_04011 0.70 -0.3
343,083 - BACOVA_04011 0.71 -0.1
343,087 - BACOVA_04011 0.71 -0.7
343,102 + BACOVA_04011 0.72 +0.3
343,103 - BACOVA_04011 0.72 +0.5
343,106 - BACOVA_04011 0.73 -1.0
343,106 - BACOVA_04011 0.73 -0.5
343,109 - BACOVA_04011 0.73 -0.6
343,137 + BACOVA_04011 0.76 +0.3
343,138 - BACOVA_04011 0.76 +1.5
343,177 + BACOVA_04011 0.79 +1.0
343,215 - BACOVA_04011 0.82 +1.0
343,215 - BACOVA_04011 0.82 +0.2
343,240 - BACOVA_04011 0.85 -0.8
343,240 - BACOVA_04011 0.85 +1.3
343,372 - -1.0
343,425 + +3.9
343,426 - -1.1
343,438 + -0.3
343,438 + -1.7
343,463 + +0.7
343,464 - -0.6
343,478 + +0.3
343,517 + -0.1
343,518 - +1.5
343,530 - -1.4
343,606 - BACOVA_04012 0.14 +0.7
343,641 + BACOVA_04012 0.17 +1.3
343,677 + BACOVA_04012 0.20 +1.7
343,678 - BACOVA_04012 0.20 -0.6
343,678 - BACOVA_04012 0.20 -0.5
343,680 - BACOVA_04012 0.20 +1.6
343,761 + BACOVA_04012 0.27 +0.7
343,803 - BACOVA_04012 0.31 -1.3
343,882 + BACOVA_04012 0.37 -0.4
343,924 + BACOVA_04012 0.41 +3.3
343,925 - BACOVA_04012 0.41 -0.7
343,925 - BACOVA_04012 0.41 +0.7
343,933 + BACOVA_04012 0.42 -0.3
343,933 + BACOVA_04012 0.42 +0.2
343,934 - BACOVA_04012 0.42 -0.8
343,934 - BACOVA_04012 0.42 -0.5
344,207 + BACOVA_04012 0.64 -0.3
344,273 + BACOVA_04012 0.70 +0.7
344,326 + BACOVA_04012 0.74 -2.3
344,566 + +0.0
344,566 + +1.6
344,567 - -1.8
344,574 + +1.1
344,575 - +0.3
344,579 - -0.7
344,579 - +0.0
344,579 - -0.8
344,579 - +0.7
344,583 + -0.8
344,583 + +1.3
344,592 + +1.0
344,630 + -0.5
344,630 + +0.1
344,631 - -1.8
344,633 + +0.0
344,666 - -0.8
344,706 + +0.3
344,706 + -0.8
344,707 - +1.3
344,790 - BACOVA_04013 0.17 -3.0
344,833 - BACOVA_04013 0.21 -1.2
344,867 + BACOVA_04013 0.25 -0.5
344,876 + BACOVA_04013 0.26 +0.2
344,928 + BACOVA_04013 0.31 -1.3
344,933 + BACOVA_04013 0.32 +0.9
345,041 - BACOVA_04013 0.44 -0.5
345,064 - BACOVA_04013 0.46 -1.1
345,137 + BACOVA_04013 0.54 -0.8
345,138 - BACOVA_04013 0.54 -0.4
345,154 + BACOVA_04013 0.56 -0.7
345,171 - BACOVA_04013 0.58 +0.3
345,276 + BACOVA_04013 0.69 -1.1
345,277 - BACOVA_04013 0.69 +0.3
345,277 - BACOVA_04013 0.69 -1.0
345,280 + BACOVA_04013 0.69 +0.0
345,281 - BACOVA_04013 0.70 +1.1
345,281 - BACOVA_04013 0.70 +0.7
345,281 - BACOVA_04013 0.70 -0.4
345,281 - BACOVA_04013 0.70 +0.3
345,303 + BACOVA_04013 0.72 +0.3
345,304 - BACOVA_04013 0.72 -0.3
345,304 - BACOVA_04013 0.72 +0.7
345,373 + BACOVA_04013 0.80 -2.1
345,438 - BACOVA_04013 0.87 +0.7
345,519 + +0.2
345,529 + -0.8
345,533 - -0.3
345,540 - +1.1
345,540 - -0.9
345,586 - +2.3

Or see this region's nucleotide sequence