Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03897

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03895 and BACOVA_03896 overlap by 4 nucleotidesBACOVA_03896 and BACOVA_03897 are separated by 151 nucleotidesBACOVA_03897 and BACOVA_03898 are separated by 60 nucleotidesBACOVA_03898 and BACOVA_03899 overlap by 32 nucleotides BACOVA_03895: BACOVA_03895 - hypothetical protein, at 236,648 to 237,412 _03895 BACOVA_03896: BACOVA_03896 - hypothetical protein, at 237,409 to 237,846 _03896 BACOVA_03897: BACOVA_03897 - hypothetical protein, at 237,998 to 238,249 _03897 BACOVA_03898: BACOVA_03898 - hypothetical protein, at 238,310 to 238,966 _03898 BACOVA_03899: BACOVA_03899 - hypothetical protein, at 238,935 to 239,687 _03899 Position (kb) 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 237.021 kb on - strand, within BACOVA_03895at 237.023 kb on - strand, within BACOVA_03895at 237.065 kb on - strand, within BACOVA_03895at 237.170 kb on - strand, within BACOVA_03895at 237.197 kb on - strand, within BACOVA_03895at 237.221 kb on - strand, within BACOVA_03895at 237.233 kb on - strand, within BACOVA_03895at 237.273 kb on - strand, within BACOVA_03895at 237.273 kb on - strand, within BACOVA_03895at 237.281 kb on - strand, within BACOVA_03895at 237.318 kb on - strand, within BACOVA_03895at 237.430 kb on - strandat 237.483 kb on - strand, within BACOVA_03896at 237.536 kb on - strand, within BACOVA_03896at 237.544 kb on - strand, within BACOVA_03896at 237.649 kb on - strand, within BACOVA_03896at 237.733 kb on - strand, within BACOVA_03896at 237.818 kb on - strandat 237.849 kb on - strandat 237.852 kb on - strandat 237.852 kb on - strandat 237.855 kb on - strandat 237.867 kb on - strandat 237.874 kb on - strandat 237.906 kb on - strandat 237.909 kb on - strandat 237.931 kb on - strandat 237.931 kb on - strandat 237.961 kb on - strandat 237.970 kb on + strandat 237.970 kb on + strandat 237.995 kb on - strandat 238.027 kb on + strand, within BACOVA_03897at 238.095 kb on - strand, within BACOVA_03897at 238.114 kb on + strand, within BACOVA_03897at 238.152 kb on + strand, within BACOVA_03897at 238.158 kb on - strand, within BACOVA_03897at 238.158 kb on - strand, within BACOVA_03897at 238.170 kb on - strand, within BACOVA_03897at 238.216 kb on + strand, within BACOVA_03897at 238.216 kb on + strand, within BACOVA_03897at 238.217 kb on - strand, within BACOVA_03897at 238.234 kb on + strandat 238.235 kb on - strandat 238.247 kb on + strandat 238.248 kb on - strandat 238.297 kb on - strandat 238.302 kb on - strandat 238.306 kb on - strandat 238.345 kb on + strandat 238.346 kb on - strandat 238.465 kb on - strand, within BACOVA_03898at 238.490 kb on + strand, within BACOVA_03898at 238.491 kb on - strand, within BACOVA_03898at 238.491 kb on - strand, within BACOVA_03898at 238.493 kb on - strand, within BACOVA_03898at 238.536 kb on + strand, within BACOVA_03898at 238.541 kb on + strand, within BACOVA_03898at 238.544 kb on - strand, within BACOVA_03898at 238.615 kb on + strand, within BACOVA_03898at 238.666 kb on + strand, within BACOVA_03898at 238.757 kb on - strand, within BACOVA_03898at 238.822 kb on + strand, within BACOVA_03898at 238.830 kb on + strand, within BACOVA_03898at 238.831 kb on - strand, within BACOVA_03898at 238.835 kb on - strand, within BACOVA_03898at 238.911 kb on + strandat 238.920 kb on + strandat 238.921 kb on - strandat 238.948 kb on + strandat 238.949 kb on - strandat 238.952 kb on - strandat 238.954 kb on + strandat 238.954 kb on + strandat 239.009 kb on + strandat 239.041 kb on + strand, within BACOVA_03899at 239.041 kb on + strand, within BACOVA_03899at 239.185 kb on - strand, within BACOVA_03899at 239.226 kb on + strand, within BACOVA_03899at 239.231 kb on - strand, within BACOVA_03899at 239.231 kb on - strand, within BACOVA_03899at 239.234 kb on + strand, within BACOVA_03899at 239.234 kb on + strand, within BACOVA_03899at 239.235 kb on - strand, within BACOVA_03899at 239.237 kb on + strand, within BACOVA_03899at 239.237 kb on + strand, within BACOVA_03899

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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237,021 - BACOVA_03895 0.49 +0.1
237,023 - BACOVA_03895 0.49 -0.3
237,065 - BACOVA_03895 0.55 +0.4
237,170 - BACOVA_03895 0.68 +1.4
237,197 - BACOVA_03895 0.72 -0.2
237,221 - BACOVA_03895 0.75 -0.9
237,233 - BACOVA_03895 0.76 -1.4
237,273 - BACOVA_03895 0.82 -0.7
237,273 - BACOVA_03895 0.82 +2.4
237,281 - BACOVA_03895 0.83 +1.4
237,318 - BACOVA_03895 0.88 -0.2
237,430 - -0.8
237,483 - BACOVA_03896 0.17 -1.2
237,536 - BACOVA_03896 0.29 +0.4
237,544 - BACOVA_03896 0.31 +1.8
237,649 - BACOVA_03896 0.55 +0.4
237,733 - BACOVA_03896 0.74 -0.2
237,818 - -0.4
237,849 - -0.2
237,852 - -0.0
237,852 - -1.1
237,855 - +0.7
237,867 - +0.7
237,874 - +0.4
237,906 - +0.2
237,909 - +0.4
237,931 - -0.2
237,931 - +1.1
237,961 - -0.3
237,970 + -1.5
237,970 + -1.8
237,995 - -0.4
238,027 + BACOVA_03897 0.12 -0.2
238,095 - BACOVA_03897 0.38 -0.2
238,114 + BACOVA_03897 0.46 +0.3
238,152 + BACOVA_03897 0.61 +0.2
238,158 - BACOVA_03897 0.63 -1.9
238,158 - BACOVA_03897 0.63 -0.9
238,170 - BACOVA_03897 0.68 +0.4
238,216 + BACOVA_03897 0.87 +1.4
238,216 + BACOVA_03897 0.87 -2.3
238,217 - BACOVA_03897 0.87 +1.4
238,234 + -0.9
238,235 - -0.4
238,247 + +0.1
238,248 - +0.8
238,297 - +0.6
238,302 - -0.1
238,306 - +1.1
238,345 + -0.6
238,346 - -0.6
238,465 - BACOVA_03898 0.24 -0.6
238,490 + BACOVA_03898 0.27 +0.4
238,491 - BACOVA_03898 0.28 +0.2
238,491 - BACOVA_03898 0.28 +0.8
238,493 - BACOVA_03898 0.28 -0.6
238,536 + BACOVA_03898 0.34 +0.2
238,541 + BACOVA_03898 0.35 +1.1
238,544 - BACOVA_03898 0.36 +0.6
238,615 + BACOVA_03898 0.46 -0.0
238,666 + BACOVA_03898 0.54 +0.1
238,757 - BACOVA_03898 0.68 +0.4
238,822 + BACOVA_03898 0.78 +0.8
238,830 + BACOVA_03898 0.79 +0.4
238,831 - BACOVA_03898 0.79 +0.6
238,835 - BACOVA_03898 0.80 -1.0
238,911 + +0.4
238,920 + +0.1
238,921 - -1.9
238,948 + +0.1
238,949 - +1.4
238,952 - -1.4
238,954 + -0.6
238,954 + +0.8
239,009 + +0.1
239,041 + BACOVA_03899 0.14 -1.1
239,041 + BACOVA_03899 0.14 -0.4
239,185 - BACOVA_03899 0.33 -0.3
239,226 + BACOVA_03899 0.39 -1.0
239,231 - BACOVA_03899 0.39 -0.3
239,231 - BACOVA_03899 0.39 -1.6
239,234 + BACOVA_03899 0.40 +0.4
239,234 + BACOVA_03899 0.40 -0.4
239,235 - BACOVA_03899 0.40 -0.4
239,237 + BACOVA_03899 0.40 -1.1
239,237 + BACOVA_03899 0.40 +1.0

Or see this region's nucleotide sequence