Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03816

Experiment: D-Arabinose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03815 and BACOVA_03816 are separated by 84 nucleotidesBACOVA_03816 and BACOVA_03817 are separated by 70 nucleotides BACOVA_03815: BACOVA_03815 - TonB-dependent receptor plug domain protein, at 160,438 to 162,624 _03815 BACOVA_03816: BACOVA_03816 - hypothetical protein, at 162,709 to 163,065 _03816 BACOVA_03817: BACOVA_03817 - TrkA C-terminal domain protein, at 163,136 to 164,734 _03817 Position (kb) 162 163 164Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 161.758 kb on - strand, within BACOVA_03815at 161.758 kb on - strand, within BACOVA_03815at 161.760 kb on - strand, within BACOVA_03815at 161.809 kb on - strand, within BACOVA_03815at 161.838 kb on + strand, within BACOVA_03815at 161.839 kb on - strand, within BACOVA_03815at 161.844 kb on + strand, within BACOVA_03815at 161.845 kb on - strand, within BACOVA_03815at 161.856 kb on + strand, within BACOVA_03815at 161.889 kb on + strand, within BACOVA_03815at 161.968 kb on + strand, within BACOVA_03815at 161.968 kb on + strand, within BACOVA_03815at 161.968 kb on + strand, within BACOVA_03815at 161.969 kb on - strand, within BACOVA_03815at 161.969 kb on - strand, within BACOVA_03815at 161.999 kb on + strand, within BACOVA_03815at 161.999 kb on + strand, within BACOVA_03815at 162.000 kb on - strand, within BACOVA_03815at 162.019 kb on - strand, within BACOVA_03815at 162.108 kb on + strand, within BACOVA_03815at 162.159 kb on + strand, within BACOVA_03815at 162.247 kb on + strand, within BACOVA_03815at 162.250 kb on + strand, within BACOVA_03815at 162.251 kb on - strand, within BACOVA_03815at 162.254 kb on - strand, within BACOVA_03815at 162.284 kb on - strand, within BACOVA_03815at 162.345 kb on + strand, within BACOVA_03815at 162.348 kb on - strand, within BACOVA_03815at 162.404 kb on + strand, within BACOVA_03815at 162.405 kb on - strand, within BACOVA_03815at 162.438 kb on + strandat 162.442 kb on - strandat 162.442 kb on - strandat 162.460 kb on + strandat 162.460 kb on + strandat 162.463 kb on - strandat 162.465 kb on - strandat 162.530 kb on - strandat 162.614 kb on + strandat 162.636 kb on + strandat 162.654 kb on - strandat 162.654 kb on - strandat 162.674 kb on - strandat 162.695 kb on + strandat 162.696 kb on - strandat 162.696 kb on - strandat 162.744 kb on + strandat 162.744 kb on + strandat 162.745 kb on - strand, within BACOVA_03816at 162.777 kb on - strand, within BACOVA_03816at 162.777 kb on - strand, within BACOVA_03816at 162.786 kb on - strand, within BACOVA_03816at 162.809 kb on + strand, within BACOVA_03816at 162.810 kb on - strand, within BACOVA_03816at 162.869 kb on - strand, within BACOVA_03816at 163.018 kb on - strand, within BACOVA_03816at 163.022 kb on - strand, within BACOVA_03816at 163.034 kb on + strandat 163.035 kb on + strandat 163.042 kb on - strandat 163.101 kb on - strandat 163.141 kb on - strandat 163.182 kb on - strandat 163.209 kb on + strandat 163.209 kb on + strandat 163.210 kb on - strandat 163.215 kb on - strandat 163.229 kb on - strandat 163.347 kb on - strand, within BACOVA_03817at 163.429 kb on + strand, within BACOVA_03817at 163.508 kb on - strand, within BACOVA_03817at 163.531 kb on + strand, within BACOVA_03817at 163.557 kb on - strand, within BACOVA_03817at 163.615 kb on + strand, within BACOVA_03817at 163.615 kb on + strand, within BACOVA_03817at 163.615 kb on + strand, within BACOVA_03817at 163.619 kb on + strand, within BACOVA_03817at 163.724 kb on - strand, within BACOVA_03817at 163.757 kb on - strand, within BACOVA_03817at 163.870 kb on + strand, within BACOVA_03817at 163.874 kb on + strand, within BACOVA_03817at 163.952 kb on - strand, within BACOVA_03817at 163.994 kb on + strand, within BACOVA_03817at 164.003 kb on + strand, within BACOVA_03817at 164.004 kb on - strand, within BACOVA_03817at 164.008 kb on - strand, within BACOVA_03817at 164.030 kb on - strand, within BACOVA_03817at 164.039 kb on - strand, within BACOVA_03817at 164.039 kb on - strand, within BACOVA_03817at 164.045 kb on - strand, within BACOVA_03817at 164.045 kb on - strand, within BACOVA_03817

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose 10 mM (C)
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161,758 - BACOVA_03815 0.60 -1.8
161,758 - BACOVA_03815 0.60 +0.1
161,760 - BACOVA_03815 0.60 +2.4
161,809 - BACOVA_03815 0.63 -1.5
161,838 + BACOVA_03815 0.64 -0.4
161,839 - BACOVA_03815 0.64 -3.1
161,844 + BACOVA_03815 0.64 -1.2
161,845 - BACOVA_03815 0.64 +1.0
161,856 + BACOVA_03815 0.65 -0.7
161,889 + BACOVA_03815 0.66 +0.8
161,968 + BACOVA_03815 0.70 +0.8
161,968 + BACOVA_03815 0.70 +0.1
161,968 + BACOVA_03815 0.70 +2.4
161,969 - BACOVA_03815 0.70 +1.7
161,969 - BACOVA_03815 0.70 +1.4
161,999 + BACOVA_03815 0.71 +0.1
161,999 + BACOVA_03815 0.71 -1.2
162,000 - BACOVA_03815 0.71 +0.6
162,019 - BACOVA_03815 0.72 -1.5
162,108 + BACOVA_03815 0.76 -0.9
162,159 + BACOVA_03815 0.79 +0.4
162,247 + BACOVA_03815 0.83 +0.3
162,250 + BACOVA_03815 0.83 -0.2
162,251 - BACOVA_03815 0.83 +1.0
162,254 - BACOVA_03815 0.83 +0.8
162,284 - BACOVA_03815 0.84 +0.1
162,345 + BACOVA_03815 0.87 +0.1
162,348 - BACOVA_03815 0.87 -1.6
162,404 + BACOVA_03815 0.90 -0.2
162,405 - BACOVA_03815 0.90 -2.1
162,438 + +0.6
162,442 - +0.8
162,442 - -0.2
162,460 + +0.1
162,460 + -0.2
162,463 - -0.0
162,465 - +0.1
162,530 - -1.0
162,614 + +0.4
162,636 + -0.2
162,654 - -2.0
162,654 - +2.4
162,674 - -0.7
162,695 + +0.4
162,696 - +0.3
162,696 - +0.8
162,744 + -0.6
162,744 + -1.2
162,745 - BACOVA_03816 0.10 +1.1
162,777 - BACOVA_03816 0.19 -0.6
162,777 - BACOVA_03816 0.19 +0.9
162,786 - BACOVA_03816 0.22 +0.1
162,809 + BACOVA_03816 0.28 +0.5
162,810 - BACOVA_03816 0.28 -0.9
162,869 - BACOVA_03816 0.45 -0.3
163,018 - BACOVA_03816 0.87 -1.9
163,022 - BACOVA_03816 0.88 -1.3
163,034 + -1.2
163,035 + -2.0
163,042 - -0.1
163,101 - -1.3
163,141 - -1.9
163,182 - +0.4
163,209 + +0.1
163,209 + -0.0
163,210 - -1.3
163,215 - -0.2
163,229 - +2.0
163,347 - BACOVA_03817 0.13 -0.4
163,429 + BACOVA_03817 0.18 +0.4
163,508 - BACOVA_03817 0.23 -0.2
163,531 + BACOVA_03817 0.25 +0.9
163,557 - BACOVA_03817 0.26 +0.1
163,615 + BACOVA_03817 0.30 -0.6
163,615 + BACOVA_03817 0.30 +0.4
163,615 + BACOVA_03817 0.30 +0.4
163,619 + BACOVA_03817 0.30 -1.0
163,724 - BACOVA_03817 0.37 +0.4
163,757 - BACOVA_03817 0.39 -1.5
163,870 + BACOVA_03817 0.46 -0.2
163,874 + BACOVA_03817 0.46 -0.4
163,952 - BACOVA_03817 0.51 -1.2
163,994 + BACOVA_03817 0.54 -2.3
164,003 + BACOVA_03817 0.54 -1.2
164,004 - BACOVA_03817 0.54 +2.4
164,008 - BACOVA_03817 0.55 +1.4
164,030 - BACOVA_03817 0.56 -0.7
164,039 - BACOVA_03817 0.56 -1.2
164,039 - BACOVA_03817 0.56 -0.4
164,045 - BACOVA_03817 0.57 -0.6
164,045 - BACOVA_03817 0.57 -0.4

Or see this region's nucleotide sequence